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James P. Falese, Emily J. McFadden, Christopher A. D'Inzeo, Amanda E. Hargrove

Alyssa A. Pratt, David A. Hendrix

Austin Herbert, Abigail Hatfield, Alexandra Randazza, Valeria Miyamoto, Katie Palmer, Lela Lackey

Mark C. Noe, Claire M. Steppan, Andrea Weston

Siwy Ling Yang, Louis DeFalco, Sainan Wang, Yi Hao Wong, Jian Han, Chee Keng Mok, Kiat Yee Tan, Su Ying Lim, Zhiya Zhao, Yu Zhang, Jovi Jian An Lim, Joy S. Xiang, Radoslaw Sobota, Lin-Fa Wang, Justin Jang Hann Chu, Andres Merits, Roland G. Huber, Yue Wan

Yuquan Tong, Xiaoxuan Su, Warren Rouse, Jessica L. Childs-Disney, Amirhossein Taghavi, Patrick R. A. Zanon, Sandra Kovachka, Tenghui Wang, Walter N. Moss, Matthew D. Disney

Christopher R. Fullenkamp, Xiao Liang, Martin Pettersson, John Schneekloth

Alison Ziesel, Hosna Jabbari

Warren B Rouse, Van S Tompkins, Collin A O’Leary, Walter N Moss

Taylor O Eich, Collin A O’Leary, Walter N Moss

William A. Haseltine, Roberto Patarca

Zachary Lozier, Lilyahna Hill, Elizabeth Semmann, W. Allen Miller

Sandra Kovachka, Yuquan Tong, Jessica L. Childs-Disney, Matthew D. Disney

Hao Wu, Sharan K. Bagal, Meizhong Jin

Farzana Nazneen, E. Ashley Thompson, Claire Blackwell, Jonathan S. Bai, Faqing Huang, Fengwei Bai

Peiyuan Zhang, Jessica A. Bush, Jessica L. Childs-Disney, Matthew D. Disney

Blessy M. Suresh, Amirhossein Taghavi, Jessica L. Childs-Disney, Matthew D. Disney

Yuquan Tong, Yeongju Lee, Xiaohui Liu, Jessica L. Childs-Disney, Blessy M. Suresh, Raphael I. Benhamou, Chunying Yang, Weimin Li, Matthew G. Costales, Hafeez S. Haniff, Sonja Sievers, Daniel Abegg, Tristan Wegner, Tiffany O. Paulisch, Elizabeth Lekah, Maison Grefe, Gogce Crynen, Montina Van Meter, Tenghui Wang, Quentin M. R. Gibaut, John L. Cleveland, Alexander Adibekian, Frank Glorius, Herbert Waldmann, Matthew D. Disney

Risa Karakida Kawaguchi, Hisanori Kiryu

Peiyuan Zhang, Jessica A. Bush, Jessica L. Childs-Disney, Matthew D. Disney

Pnina Gottfried Komlosh, Jonathan L. Chen, Jessica Childs-Disney, Matthew D. Disney, Dan Canaani

Ella Czarina Morishita

Xueyi Yang, Jessica L. Childs-Disney, Matthew D. Disney

Jake M. Peterson, Collin A. O'Leary, Evelyn C. Coppenbarger, Van S. Tompkins, Walter N. Moss

Collin A. O'Leary, Warren B. Rouse, Jake M. Peterson, Van S. Tompkins, Ryan J. Andrews, Phillip J. McCown, Walter N. Moss

Xueyi Yang, Jessica L. Childs‐Disney, M. Paegel, Matthew D. Disney

Sarah M Assmann, Hong-Li Chou, Philip C Bevilacqua

Jake M. Peterson, Collin A. O’Leary, Walter N. Moss

Van S. Tompkins, Warren B. Rouse, Collin A. O’Leary, Ryan J. Andrews, Walter N. Moss

Maria Nalewaj, Marta Szabat

Ryan J. Andrews, Warren B. Rouse, Collin A. O’Leary, Nicholas J. Booher, Walter N. Moss

Caroline Jane Ross, Igor Ulitsky

Collin A O’Leary, Van S Tompkins, Warren B Rouse, Gijong Nam, Walter N Moss

Warren B Rouse, Ryan J Andrews, Nicholas J Booher, Jibo Wang, Michael E Woodman, Ernst R Dow, Theodore C Jessop, Walter N Moss

Natalia N. Singh, Collin A. O'Leary, Taylor Eich, Walter N. Moss, Ravindra N. Singh

Warren B. Rouse, Collin A. O’Leary, Nicholas J. Booher, Walter N. Moss

Tim Y. Hou, W. Lee Kraus

Ryan R. Lappe, Manjula G. Elmore, Zachary R. Lozier, Georg Jander, W. Allen Miller, Steven A. Whitham

Yuquan Tong, Quentin M. R. Gibaut, Warren Rouse, Jessica L. Childs-Disney, Blessy M. Suresh, Daniel Abegg, Shruti Choudhary, Yoshihiro Akahori, Alexander Adibekian, Walter N. Moss, Matthew D. Disney

Warren B. Rouse, Jessica Gart, Lauren Peysakhova, Walter N. Moss

Siwy Ling Yang, Riccardo Delli Ponti, Yue Wan, Roland G. Huber

Shubhankar Ambike, Cho-Chin Cheng, Martin Feuerherd, Stoyan Velkov, Domizia Baldassi, Suliman Qadir Afridi, Diana Porras-Gonzalez, Xin Wei, Philipp Hagen, Nikolaus Kneidinger, Mircea Gabriel Stoleriu, Vincent Grass, Gerald Burgstaller, Andreas Pichlmair, Olivia M Merkel, Chunkyu Ko, Thomas Michler

Riccardo Delli Ponti, Jiaxu Wang, Yue Wan, Roland G. Huber

Jessica L. Childs-Disney, Xueyi Yang, Quentin M. R. Gibaut, Yuquan Tong, Robert T. Batey, Matthew D. Disney

Tamar Schlick, Qiyao Zhu, Abhishek Dey, Swati Jain, Shuting Yan, Alain Laederach

Ryan J Andrews, Collin A O’Leary, Van S Tompkins, Jake M Peterson, Hafeez S Haniff, Christopher Williams, Matthew D Disney, Walter N Moss

Margaritis Avgeris, Panagiotis G. Adamopoulos, Aikaterini Galani, Marieta Xagorari, Dimitrios Gourgiotis, Ioannis P. Trougakos, Nikolaos Voulgaris, Meletios-Athanasios Dimopoulos, Nikolaos S. Thomaidis, Andreas Scorilas

Alan Zammit, Leon Helwerda, René C L Olsthoorn, Fons J Verbeek, Alexander P Gultyaev

Jared T. Baisden, Jessica L. Childs-Disney, Lucas S. Ryan, Matthew D. Disney

Siwy Ling Yang, Louis DeFalco, Danielle E. Anderson, Yu Zhang, Jong Ghut Ashley Aw, Su Ying Lim, Xin Ni Lim, Kiat Yee Tan, Tong Zhang, Tanu Chawla, Yan Su, Alexander Lezhava, Andres Merits, Lin-Fa Wang, Roland G. Huber, Yue Wan

Chiyu Zhang, Donald R. Forsdyke

Rafael de Cesaris Araujo Tavares, Gandhar Mahadeshwar, Han Wan, Nicholas C. Huston, Anna Marie Pyle

Christina Haddad, Jesse Davila-Calderon, Blanton S. Tolbert

Matthew G. Costales, Jessica L. Childs-Disney, Hafeez S. Haniff, Matthew D. Disney

Peiyuan Zhang, Hye-Jin Park, Jie Zhang, Eunsung Junn, Ryan J. Andrews, Sai Pradeep Velagapudi, Daniel Abegg, Kamalakannan Vishnu, Matthew G. Costales, Jessica L. Childs-Disney, Alexander Adibekian, Walter N. Moss, M. Maral Mouradian, Matthew D. Disney

Ramya Rangan, Ivan N. Zheludev, Rachel J. Hagey, Edward A. Pham, Hannah K. Wayment-Steele, Jeffrey S. Glenn, Rhiju Das

Ryan J. Andrews, Levi Baber, Walter N. Moss

Ryan J. Andrews, Collin A. O’Leary, Walter N. Moss

Slavica Pavlovic Djuranovic, Jessey Erath, Ryan J Andrews, Peter O Bayguinov, Joyce J Chung, Douglas L Chalker, James AJ Fitzpatrick, Walter N Moss, Pawel Szczesny, Sergej Djuranovic

Andrei Ursu, Jessica L. Childs-Disney, Ryan J. Andrews, Collin A. O’Leary, Samantha M. Meyer, Alicia J. Angelbello, Walter N. Moss, Matthew D. Disney

David Mitchell, Sarah M Assmann, Philip C Bevilacqua

Collin A. O’Leary, Ryan J. Andrews, Van S. Tompkins, Jonathan L. Chen, Jessica L. Childs-Disney, Matthew D. Disney, Walter N. Moss

Ryan J. Andrews, Walter N. Moss

2025	Structural analysis of the lncRNA SChLAP1 reveals protein binding interfaces and a conformationally heterogenous retroviral insertion RNA James P. Falese, Emily J. McFadden, Christopher A. D'Inzeo, Amanda E. Hargrove
2025	Unraveling unbreakable hairpins: characterizing RNA secondary structures that are persistent after dinucleotide shuffling RNA Alyssa A. Pratt, David A. Hendrix
2025	The Druggable Transcriptome Project: From Chemical Probes to Precision Medicines Biochemistry Matthew D. Disney
2025	Precursor RNA structural patterns at SF3B1 mutation sensitive cryptic 3’ splice sites RNA Biology Austin Herbert, Abigail Hatfield, Alexandra Randazza, Valeria Miyamoto, Katie Palmer, Lela Lackey
2025	Reference Module in Chemistry, Molecular Sciences and Chemical Engineering Mark C. Noe, Claire M. Steppan, Andrea Weston
2025	A conserved long-range RNA interaction in SARS-CoV-2 recruits ADAR1 to enhance virus proliferation Nature Communications Siwy Ling Yang, Louis DeFalco, Sainan Wang, Yi Hao Wong, Jian Han, Chee Keng Mok, Kiat Yee Tan, Su Ying Lim, Zhiya Zhao, Yu Zhang, Jovi Jian An Lim, Joy S. Xiang, Radoslaw Sobota, Lin-Fa Wang, Justin Jang Hann Chu, Andres Merits, Roland G. Huber, Yue Wan
2024	Transcriptome-Wide, Unbiased Profiling of Ribonuclease Targeting Chimeras Journal of the American Chemical Society Yuquan Tong, Xiaoxuan Su, Warren Rouse, Jessica L. Childs-Disney, Amirhossein Taghavi, Patrick R. A. Zanon, Sandra Kovachka, Tenghui Wang, Walter N. Moss, Matthew D. Disney
2024	Methods and Principles in Medicinal Chemistry Christopher R. Fullenkamp, Xiao Liang, Martin Pettersson, John Schneekloth
2024	Unveiling hidden structural patterns in the SARS-CoV-2 genome: Computational insights and comparative analysis PLOS ONE Alison Ziesel, Hosna Jabbari
2024	The RNA secondary structure of androgen receptor-FL and V7 transcripts reveals novel regulatory regions Nucleic Acids Research Warren B Rouse, Van S Tompkins, Collin A O’Leary, Walter N Moss
2024	Epigenetic Drug Discovery
2024	Intronic RNA secondary structural information captured for the human MYC pre-mRNA NAR Genomics and Bioinformatics Taylor O Eich, Collin A O’Leary, Walter N Moss
2024	The RNA Revolution in the Central Molecular Biology Dogma Evolution International Journal of Molecular Sciences William A. Haseltine, Roberto Patarca
2024	A proposed new Tombusviridae genus featuring extremely long 5’ untranslated regions and a luteo/polerovirus-like gene block Frontiers in Virology Zachary Lozier, Lilyahna Hill, Elizabeth Semmann, W. Allen Miller
2024	Heterobifunctional small molecules to modulate RNA function Trends in Pharmacological Sciences Sandra Kovachka, Yuquan Tong, Jessica L. Childs-Disney, Matthew D. Disney
2024	Epigenetic Drug Discovery Hao Wu, Sharan K. Bagal, Meizhong Jin
2023	An effective live-attenuated Zika vaccine candidate with a modified 5′ untranslated region npj Vaccines Farzana Nazneen, E. Ashley Thompson, Claire Blackwell, Jonathan S. Bai, Faqing Huang, Fengwei Bai
2023	Handbook of Chemical Biology of Nucleic Acids Peiyuan Zhang, Jessica A. Bush, Jessica L. Childs-Disney, Matthew D. Disney
2023	Fragment-Based Approaches to Identify RNA Binders Journal of Medicinal Chemistry Blessy M. Suresh, Amirhossein Taghavi, Jessica L. Childs-Disney, Matthew D. Disney
2023	Programming inactive RNA-binding small molecules into bioactive degraders Nature Yuquan Tong, Yeongju Lee, Xiaohui Liu, Jessica L. Childs-Disney, Blessy M. Suresh, Raphael I. Benhamou, Chunying Yang, Weimin Li, Matthew G. Costales, Hafeez S. Haniff, Sonja Sievers, Daniel Abegg, Tristan Wegner, Tiffany O. Paulisch, Elizabeth Lekah, Maison Grefe, Gogce Crynen, Montina Van Meter, Tenghui Wang, Quentin M. R. Gibaut, John L. Cleveland, Alexander Adibekian, Frank Glorius, Herbert Waldmann, Matthew D. Disney
2023	Methods in Molecular Biology Risa Karakida Kawaguchi, Hisanori Kiryu
2023	Handbook of Chemical Biology of Nucleic Acids Peiyuan Zhang, Jessica A. Bush, Jessica L. Childs-Disney, Matthew D. Disney
2023	Broad-spectrum metastasis suppressing compounds and therapeutic uses thereof in human tumors Scientific Reports Pnina Gottfried Komlosh, Jonathan L. Chen, Jessica Childs-Disney, Matthew D. Disney, Dan Canaani
2023	Discovery of RNA-targeted small molecules through the merging of experimental and computational technologies Expert Opinion on Drug Discovery Ella Czarina Morishita
2023	A meditation on accelerating the development of small molecule medicines targeting RNA Expert Opinion on Drug Discovery Xueyi Yang, Jessica L. Childs-Disney, Matthew D. Disney
2023	Discovery of RNA secondary structural motifs using sequence-ordered thermodynamic stability and comparative sequence analysis MethodsX Jake M. Peterson, Collin A. O'Leary, Evelyn C. Coppenbarger, Van S. Tompkins, Walter N. Moss
2023	Navigating Non-Coding RNA Collin A. O'Leary, Warren B. Rouse, Jake M. Peterson, Van S. Tompkins, Ryan J. Andrews, Phillip J. McCown, Walter N. Moss
2023	DNA‐Encoded Libraries and Their Application to RNA Israel Journal of Chemistry Xueyi Yang, Jessica L. Childs‐Disney, M. Paegel, Matthew D. Disney
2023	Rock, scissors, paper: How RNA structure informs function The Plant Cell Sarah M Assmann, Hong-Li Chou, Philip C Bevilacqua
2022	In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation Scientific Reports Jake M. Peterson, Collin A. O’Leary, Walter N. Moss
2022	Analyses of human cancer driver genes uncovers evolutionarily conserved RNA structural elements involved in posttranscriptional control PLOS ONE Van S. Tompkins, Warren B. Rouse, Collin A. O’Leary, Ryan J. Andrews, Walter N. Moss
2022	Examples of Structural Motifs in Viral Genomes and Approaches for RNA Structure Characterization International Journal of Molecular Sciences Maria Nalewaj, Marta Szabat
2022	ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes PeerJ Ryan J. Andrews, Warren B. Rouse, Collin A. O’Leary, Nicholas J. Booher, Walter N. Moss
2022	Discovering functional motifs in long noncoding RNAs WIREs RNA Caroline Jane Ross, Igor Ulitsky
2022	Thermodynamic and structural characterization of an EBV infected B-cell lymphoma transcriptome NAR Genomics and Bioinformatics Collin A O’Leary, Van S Tompkins, Warren B Rouse, Gijong Nam, Walter N Moss
2022	Prediction and analysis of functional RNA structures within the integrative genomics viewer NAR Genomics and Bioinformatics Warren B Rouse, Ryan J Andrews, Nicholas J Booher, Jibo Wang, Michael E Woodman, Ernst R Dow, Theodore C Jessop, Walter N Moss
2022	Structural Context of a Critical Exon of Spinal Muscular Atrophy Gene Frontiers in Molecular Biosciences Natalia N. Singh, Collin A. O'Leary, Taylor Eich, Walter N. Moss, Ravindra N. Singh
2022	Expansion of the RNAStructuromeDB to include secondary structural data spanning the human protein-coding transcriptome Scientific Reports Warren B. Rouse, Collin A. O’Leary, Nicholas J. Booher, Walter N. Moss
2022	Analysis of estrogen-regulated enhancer RNAs identifies a functional motif required for enhancer assembly and gene expression Cell Reports Tim Y. Hou, W. Lee Kraus
2022	Metagenomic identification of novel viruses of maize and teosinte in North America BMC Genomics Ryan R. Lappe, Manjula G. Elmore, Zachary R. Lozier, Georg Jander, W. Allen Miller, Steven A. Whitham
2022	Transcriptome-Wide Mapping of Small-Molecule RNA-Binding Sites in Cells Informs an Isoform-Specific Degrader of QSOX1 mRNA Journal of the American Chemical Society Yuquan Tong, Quentin M. R. Gibaut, Warren Rouse, Jessica L. Childs-Disney, Blessy M. Suresh, Daniel Abegg, Shruti Choudhary, Yoshihiro Akahori, Alexander Adibekian, Walter N. Moss, Matthew D. Disney
2022	Analysis of key genes in Mycobacterium ulcerans reveals conserved RNA structural motifs and regions with apparent pressure to remain unstructured Frontiers in Tropical Diseases Warren B. Rouse, Jessica Gart, Lauren Peysakhova, Walter N. Moss
2022	Computational and Experimental Approaches to Study the RNA Secondary Structures of RNA Viruses Viruses Siwy Ling Yang, Riccardo Delli Ponti, Yue Wan, Roland G. Huber
2022	Targeting genomic SARS-CoV-2 RNA with siRNAs allows efficient inhibition of viral replication and spread Nucleic Acids Research Shubhankar Ambike, Cho-Chin Cheng, Martin Feuerherd, Stoyan Velkov, Domizia Baldassi, Suliman Qadir Afridi, Diana Porras-Gonzalez, Xin Wei, Philipp Hagen, Nikolaus Kneidinger, Mircea Gabriel Stoleriu, Vincent Grass, Gerald Burgstaller, Andreas Pichlmair, Olivia M Merkel, Chunkyu Ko, Thomas Michler
2022	RNAvigator: A Pipeline to Identify Candidates for Functional RNA Structure Elements Frontiers in Virology Riccardo Delli Ponti, Jiaxu Wang, Yue Wan, Roland G. Huber
2022	Targeting RNA structures with small molecules Nature Reviews Drug Discovery Jessica L. Childs-Disney, Xueyi Yang, Quentin M. R. Gibaut, Yuquan Tong, Robert T. Batey, Matthew D. Disney
2021	To Knot or Not to Knot: Multiple Conformations of the SARS-CoV-2 Frameshifting RNA Element Journal of the American Chemical Society Tamar Schlick, Qiyao Zhu, Abhishek Dey, Swati Jain, Shuting Yan, Alain Laederach
2021	A map of the SARS-CoV-2 RNA structurome NAR Genomics and Bioinformatics Ryan J Andrews, Collin A O’Leary, Van S Tompkins, Jake M Peterson, Hafeez S Haniff, Christopher Williams, Matthew D Disney, Walter N Moss
2021	Novel Nested-Seq Approach for SARS-CoV-2 Real-Time Epidemiology and In-Depth Mutational Profiling in Wastewater International Journal of Molecular Sciences Margaritis Avgeris, Panagiotis G. Adamopoulos, Aikaterini Galani, Marieta Xagorari, Dimitrios Gourgiotis, Ioannis P. Trougakos, Nikolaos Voulgaris, Meletios-Athanasios Dimopoulos, Nikolaos S. Thomaidis, Andreas Scorilas
2021	A database of flavivirus RNA structures with a search algorithm for pseudoknots and triple base interactions Bioinformatics Alan Zammit, Leon Helwerda, René C L Olsthoorn, Fons J Verbeek, Alexander P Gultyaev
2021	Affecting RNA biology genome-wide by binding small molecules and chemically induced proximity Current Opinion in Chemical Biology Jared T. Baisden, Jessica L. Childs-Disney, Lucas S. Ryan, Matthew D. Disney
2021	Neutralism versus selectionism: Chargaff's second parity rule, revisited Genetica Donald R. Forsdyke
2021	Comprehensive mapping of SARS-CoV-2 interactions in vivo reveals functional virus-host interactions Nature Communications Siwy Ling Yang, Louis DeFalco, Danielle E. Anderson, Yu Zhang, Jong Ghut Ashley Aw, Su Ying Lim, Xin Ni Lim, Kiat Yee Tan, Tong Zhang, Tanu Chawla, Yan Su, Alexander Lezhava, Andres Merits, Lin-Fa Wang, Roland G. Huber, Yue Wan
2021	Potential Achilles heels of SARS-CoV-2 are best displayed by the base order-dependent component of RNA folding energy Computational Biology and Chemistry Chiyu Zhang, Donald R. Forsdyke
2021	The Global and Local Distribution of RNA Structure throughout the SARS-CoV-2 Genome Journal of Virology Rafael de Cesaris Araujo Tavares, Gandhar Mahadeshwar, Han Wan, Nicholas C. Huston, Anna Marie Pyle
2020	Integrated approaches to reveal mechanisms by which RNA viruses reprogram the cellular environment Methods Christina Haddad, Jesse Davila-Calderon, Blanton S. Tolbert
2020	How We Think about Targeting RNA with Small Molecules Journal of Medicinal Chemistry Matthew G. Costales, Jessica L. Childs-Disney, Hafeez S. Haniff, Matthew D. Disney
2020	Translation of the intrinsically disordered protein α-synuclein is inhibited by a small molecule targeting its structured mRNA Proceedings of the National Academy of Sciences Peiyuan Zhang, Hye-Jin Park, Jie Zhang, Eunsung Junn, Ryan J. Andrews, Sai Pradeep Velagapudi, Daniel Abegg, Kamalakannan Vishnu, Matthew G. Costales, Jessica L. Childs-Disney, Alexander Adibekian, Walter N. Moss, M. Maral Mouradian, Matthew D. Disney
2020	RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look RNA Ramya Rangan, Ivan N. Zheludev, Rachel J. Hagey, Edward A. Pham, Hannah K. Wayment-Steele, Jeffrey S. Glenn, Rhiju Das
2020	Mapping the RNA structural landscape of viral genomes Methods Ryan J. Andrews, Levi Baber, Walter N. Moss
2020	A survey of RNA secondary structural propensity encoded within human herpesvirus genomes: global comparisons and local motifs PeerJ Ryan J. Andrews, Collin A. O’Leary, Walter N. Moss
2020	Plasmodium falciparum translational machinery condones polyadenosine repeats eLife Slavica Pavlovic Djuranovic, Jessey Erath, Ryan J Andrews, Peter O Bayguinov, Joyce J Chung, Douglas L Chalker, James AJ Fitzpatrick, Walter N Moss, Pawel Szczesny, Sergej Djuranovic
2020	Design of small molecules targeting RNA structure from sequence Chemical Society Reviews Andrei Ursu, Jessica L. Childs-Disney, Ryan J. Andrews, Collin A. O’Leary, Samantha M. Meyer, Alicia J. Angelbello, Walter N. Moss, Matthew D. Disney
2019	Probing RNA structure in vivo Current Opinion in Structural Biology David Mitchell, Sarah M Assmann, Philip C Bevilacqua
2019	RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression PLOS ONE Collin A. O’Leary, Ryan J. Andrews, Van S. Tompkins, Jonathan L. Chen, Jessica L. Childs-Disney, Matthew D. Disney, Walter N. Moss
2019	Computational approaches for the discovery of splicing regulatory RNA structures Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms Ryan J. Andrews, Walter N. Moss
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