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2022	Identifying General Tumor and Specific Lung Cancer Biomarkers by Transcriptomic Analysis Biology Beatriz Andrea Otálora-Otálora, Daniel Alejandro Osuna-Garzón, Michael Steven Carvajal-Parra, Alejandra Cañas, Martín Montecino, Liliana López-Kleine, Adriana Rojas
2022	Multi-Omics Approaches and Resources for Systems-Level Gene Function Prediction in the Plant Kingdom Plants Muhammad-Redha Abdullah-Zawawi, Nisha Govender, Sarahani Harun, Nor Azlan Nor Muhammad, Zamri Zainal, Zeti-Azura Mohamed-Hussein
2022	Approaches in Gene Coexpression Analysis in Eukaryotes Biology Vasileios L. Zogopoulos, Georgia Saxami, Apostolos Malatras, Konstantinos Papadopoulos, Ioanna Tsotra, Vassiliki A. Iconomidou, Ioannis Michalopoulos
2022	2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Vladimir Kunc, Jiri Klema
2022	Identification of the Transcriptional Regulatory Role of RUNX2 by Network Analysis in Lung Cancer Cells Biomedicines Beatriz Andrea Otálora-Otálora, Cristian González Prieto, Lucia Guerrero, Camila Bernal-Forigua, Martin Montecino, Alejandra Cañas, Liliana López-Kleine, Adriana Rojas
2022	Identifying large-scale interaction atlases using probabilistic graphs and external knowledge Journal of Clinical and Translational Science Sree K. Chanumolu, Hasan H. Otu
2021	Juxtapose: a gene-embedding approach for comparing co-expression networks BMC Bioinformatics Katie Ovens, Farhad Maleki, B. Frank Eames, Ian McQuillan
2021	Network biology to uncover functional and structural properties of the plant immune system Current Opinion in Plant Biology Bharat Mishra, Nilesh Kumar, M. Shahid Mukhtar
2021	Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine International Journal of Molecular Sciences Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
2020	X-Module: A novel fusion measure to associate co-expressed gene modules from condition-specific expression profiles Journal of Biosciences Tulika Kakati, Dhruba K Bhattacharyya, Jugal K Kalita
2020	Advancing from protein interactomes and gene co-expression networks towards multi-omics-based composite networks: approaches for predicting and extracting biological knowledge Briefings in Functional Genomics Vinay Randhawa, Shivalika Pathania
2019	Joint Transcriptomic Analysis of Lung Cancer and Other Lung Diseases Frontiers in Genetics Beatriz Andrea Otálora-Otálora, Mauro Florez, Liliana López-Kleine, Alejandra Canas Arboleda, Diana Marcela Grajales Urrego, Adriana Rojas
2019	Gene co-expression network for Xanthomonas-challenged cassava reveals key regulatory elements of immunity processes European Journal of Plant Pathology Fabio Gómez-Cano, Johana Soto, Silvia Restrepo, Adriana Bernal, Liliana López-Kleine, Camilo Ernesto López
2019	Systems Biology and Machine Learning in Plant–Pathogen Interactions Molecular Plant-Microbe Interactions® Bharat Mishra, Nilesh Kumar, M. Shahid Mukhtar
2019	QTL mapping for maize starch content and candidate gene prediction combined with co-expression network analysis Theoretical and Applied Genetics Feng Lin, Ling Zhou, Bing He, Xiaolin Zhang, Huixue Dai, Yiliang Qian, Long Ruan, Han Zhao
2019	Methods in Molecular Biology Jomar F. Rabajante, Ricardo C. H. del Rosario
2018	Gene Coexpression Network Comparison via Persistent Homology International Journal of Genomics Ali Nabi Duman, Harun Pirim
2018	Soft Computing for Biological Systems Harun Pirim
2017	Unraveling gene function in agricultural species using gene co-expression networks Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms Robert J. Schaefer, Jean-Michel Michno, Chad L. Myers
2017	Comparative NGS Transcriptomics Unravels Molecular Components Associated with Mosaic Virus Infection in a Bioenergy Plant Species, Jatropha curcas L. BioEnergy Research Archit Sood, Rajinder Singh Chauhan
2016	Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection Scientific Reports Zhenhong Jiang, Xiaobao Dong, Zhi-Gang Li, Fei He, Ziding Zhang
2016	THD-Module Extractor: An Application for CEN Module Extraction and Interesting Gene Identification for Alzheimer’s Disease Scientific Reports Tulika Kakati, Hirak Kashyap, Dhruba K. Bhattacharyya
2016	Learning from Co-expression Networks: Possibilities and Challenges Frontiers in Plant Science Elise A. R. Serin, Harm Nijveen, Henk W. M. Hilhorst, Wilco Ligterink
2015	A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels BMC Evolutionary Biology Gianni Monaco, Sipko van Dam, João Luis Casal Novo Ribeiro, Anis Larbi, João Pedro de Magalhães