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2025
Together throughout the year: seasonal patterns of bacterial and eukaryotic microbial communities in a macrotidal estuary
Environmental Microbiome
2025
Water Quality and Land Use Shape Bacterial Communities Across 621 Canadian Lakes
Environmental Microbiology
2025
Microbial biodiversity and metabolic functioning in sediments of coastal dune lakes on a remote island
Metabarcoding and Metagenomics
2025
Varying Responses to Heat Stress and Salinization Between Benthic and Pelagic Riverine Microbial Communities
Environmental Microbiology
2025
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium
Nature Microbiology
2025
Magnetosome gene cluster containing bacteria in oxygen-stratified freshwater ecosystems of northern landscapes
Communications Earth & Environment
2025
Bringing the uncultivated microbial majority of freshwater ecosystems into culture
Nature Communications
2025
Microbial adaptations to acidic, nutrient- and metal-rich lakes in Aotearoa New Zealand
Extremophiles
2024
Impact of Top-Down Regulation on the Growth Efficiency of Freshwater Bacterioplankton
Microorganisms
2024
Inhibition of Mn(II) oxidation performance in the presence of high residual Mn(II) concentrations
Biochemical Engineering Journal
2024
Food Webs and Feedbacks: The Untold Ecological Relevance of Antimicrobial Resistance as Seen in Harmful Algal Blooms
Microorganisms
2024
Elucidating potential bioindicators from insights in the diversity and assembly processes of prokaryotic and eukaryotic communities in the Mekong River
Environmental Research
2024
Wetzel's Limnology
2024
Responses of soil bacterial communities and maize yields to sulfur application across four soil types
Frontiers in Microbiology
2024
Paucibacter sediminis sp. nov., isolated from sediment in a freshwater pond
International Journal of Systematic and Evolutionary Microbiology
2024
Flexible genomic island conservation across freshwater and marine Methylophilaceae
The ISME Journal
2024
Frontiers of lake microbial ecology opened up by new technologies.
Japanese Journal of Limnology (Rikusuigaku Zasshi)
2024
Genome editing in ubiquitous freshwater Actinobacteria
Applied and Environmental Microbiology
2024
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota
Scientific Data
2024
Subtropical stormwater ponds are more frequently net nitrogen fixing compared to natural ponds
Biogeochemistry
2024
Taxonomic and functional metagenomic assessment of a Dolichospermum bloom in a large and deep lake south of the Alps
FEMS Microbiology Ecology
2023
Vertical niche occupation and potential metabolic interplay of microbial consortia in a deeply stratified meromictic model lake
Limnology and Oceanography
2023
Adaptive genetic traits in pelagic freshwater microbes
Environmental Microbiology
2023
Trajectories of freshwater microbial genomics and greenhouse gas saturation upon glacial retreat
Nature Communications
2023
High-resolution metagenomic reconstruction of the freshwater spring bloom
Microbiome
2023
Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity
Science Advances
2023
A Novel View of the Diversity of Anoxygenic Phototrophic Bacteria Inhabiting the Chemocline of Meromictic Karst Lakes
Microorganisms
2023
Plant Compartments Shape the Assembly and Network of Vallisneria natans-Associated Microorganisms
Diversity
2023
Updated Virophage Taxonomy and Distinction from Polinton-like Viruses
Biomolecules
2023
A report of 44 unrecorded bacterial species isolated from Nakdong River in Korea
Environmental Biology Research
2023
Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms
mSystems
2023
Diversity, distribution, and expression of opsin genes in freshwater lakes
Molecular Ecology
2023
A genome catalogue of lake bacterial diversity and its drivers at continental scale
Nature Microbiology
2023
Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic
Science
2022
PICRUSt2 functionally predicts organic compounds degradation and sulfate reduction pathways in an acidogenic bioreactor
Frontiers of Environmental Science & Engineering
2022
Advances in Ecological Research
2022
The Evolutionary Kaleidoscope of Rhodopsins
mSystems
2022
Microbial metabolic routes in metagenome assembled genomes are mirrored by the mass balance of polycyclic aromatic hydrocarbons in a high altitude lake
Environmental Pollution
2022
Community structure and function of epiphytic bacteria attached to three submerged macrophytes
Science of The Total Environment
2022
Encyclopedia of Inland Waters
2022
Viruses direct carbon cycling in lake sediments under global change
Proceedings of the National Academy of Sciences
2022
Spatial and Temporal Variability of Dissolved Organic Matter Molecular Composition in a Stratified Eutrophic Lake
Journal of Geophysical Research: Biogeosciences
2022
Prevalence of Actinobacteria in the production of 2-methylisoborneol and geosmin, over Cyanobacteria in a temperate eutrophic reservoir
Chemical Engineering Journal Advances
2022
Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication
ISME Communications
2021
Prospects for multi-omics in the microbial ecology of water engineering
Water Research
2021
Virus-associated organosulfur metabolism in human and environmental systems
Cell Reports
2021
Resilience of Microbial Communities after Hydrogen Peroxide Treatment of a Eutrophic Lake to Suppress Harmful Cyanobacterial Blooms
Microorganisms
2021
Insights into the cyanosphere: capturing the respective metabolisms of cyanobacteria and chemotrophic bacteria in natural conditions?
Environmental Microbiology Reports
2021
Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
The ISME Journal
2021
RNA-Seq Reveals that Light and Darkness Are Different Stimuli in Freshwater Heterotrophic Actinobacteria
Frontiers in Microbiology
2021
Bacterioplankton respond with similar transcriptional activity to allochthonous dissolved organic matter in coastal and offshore Lake Michigan
Limnology and Oceanography
2020
Expansion of known ssRNA phage genomes: From tens to over a thousand
Science Advances
2020
Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes
Communications Biology
2020
Think global, act local: The small‐scale environment mainly influences microbial community development and function in lake sediment
Limnology and Oceanography
2020
Microbiome of the deep Lake Baikal, a unique oxic bathypelagic habitat
Limnology and Oceanography
2020
The environment drives microbial trait variability in aquatic habitats
Molecular Ecology
2020
Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences
Environmental Microbiology
2020
Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
Limnology and Oceanography
2020
Diazotroph Genomes and Their Seasonal Dynamics in a Stratified Humic Bog Lake
Frontiers in Microbiology
2020
Large freshwater phages with the potential to augment aerobic methane oxidation
Nature Microbiology
2020
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles
Limnology and Oceanography
2020
Expanded Phylogenetic Diversity and Metabolic Flexibility of Mercury-Methylating Microorganisms
mSystems
2019
Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes
mSphere
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