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2025	Elevated Blood Hemoglobin in Different Cavefish Populations Evolves Through Diverse Hemoglobin Gene Expression Patterns Journal of Experimental Zoology Part B: Molecular and Developmental Evolution Tyler E. Boggs, Joshua B. Gross
2025	Microbiome of caves for bioprospecting: a critical review Systems Microbiology and Biomanufacturing Annu Khatri, Krishan Kumar, Indu Shekhar Thakur
2025	Parallel phenotypic evolution of two independent cavefish lineages of Astyanax mexicanus (De Filippi, 1854) (Characiformes: Characidae) Biological Journal of the Linnean Society Jorge Hernández-Lozano, Carlos A Garita-Alvarado, Roberto Munguía-Steyer, Marco A Garduño-Sánchez, Claudia Patricia Ornelas-García
2025	Seasonal and spatial dynamics of the intestinal microbiome in tropical freshwater fish: insights from Astyanax aeneus and Brycon costaricensis in the Peñas Blancas river basin, Costa Rica BMC Microbiology Manuel Cortez-Martínez, Josmari Medrano-Lozano, Kinndle Blanco-Peña, Francisco Quesada-Alvarado, Frank Solano-Campos
2024	Hypoxia-sonic hedgehog axis as a driver of primitive hematopoiesis development and evolution in cavefish Developmental Biology Corine M. van der Weele, Katrina C. Hospes, Katherine E. Rowe, William R. Jeffery
2024	Host evolution shapes gut microbiome composition in Astyanax mexicanus Ecology and Evolution Misty R. Riddle, Nguyen K. Nguyen, Maeve Nave, Robert Peuß, Ernesto Maldonado, Nicolas Rohner, Clifford J. Tabin
2024	Unraveling stress resilience: Insights from adaptations to extreme environments by Astyanax mexicanus cavefish Journal of Experimental Zoology Part B: Molecular and Developmental Evolution Ansa E. Cobham, Nicolas Rohner
2023	Chronic Thermal Acclimation Effects on Critical Thermal Maxima (CTmax) and Oxidative Stress Differences in White Epaxial Muscle between Surface and Cave Morphotypes of the Mexican Cavefish (Astyanax mexicanus) Physiological and Biochemical Zoology Ana Gabriela Jiménez, Evan Nash-Braun, Jason R. Meyers
2023	Metagenomic and isotopic signatures of the Amazon River plume into the southern red snapper fish (Lutjanus purpureus) Estuarine, Coastal and Shelf Science Luciane de C. Nogueira, Nils E. Asp, Carlos E. Rezende, Rodrigo Petry C. Sousa, Breno Barros, Raphael Paixão, Pedro V. Gatts, Cristiane C. Thompson, Ronaldo B. Francini-Filho, Marcelo Vallinoto, Fabiano L. Thompson
2023	The Effects of Different Feeding Regimes on Body Composition, Gut Microbial Population, and Susceptibility to Pathogenic Infection in Largemouth Bass Microorganisms Yao Zheng, Haojun Zhu, Quanjie Li, Gangchun Xu
2023	Natural selection versus neutral mutation in the evolution of subterranean life: A false dichotomy? Frontiers in Ecology and Evolution David C. Culver, Johanna E. Kowalko, Tanja Pipan
2023	Changes in local interaction rules during ontogeny underlie the evolution of collective behavior iScience Alexandra Paz, Karla J. Holt, Anik Clarke, Ari Aviles, Briana Abraham, Alex C. Keene, Erik R. Duboué, Yaouen Fily, Johanna E. Kowalko
2022	Cavefish cope with environmental hypoxia by developing more erythrocytes and overexpression of hypoxia-inducible genes eLife Corine M van der Weele, William R Jeffery
2022	Outlook of Climate Change and Fish Nutrition Kavita Kumari, Sangeetha M. Nair
2022	Adapting to Novel Environments Together: Evolutionary and Ecological Correlates of the Bacterial Microbiome of the World’s Largest Cavefish Diversification (Cyprinidae, Sinocyclocheilus) Frontiers in Microbiology Shipeng Zhou, Amrapali P. Rajput, Tingru Mao, Yewei Liu, Gajaba Ellepola, Jayampathi Herath, Jian Yang, Madhava Meegaskumbura
2022	Study of metagenomics of Barilius bendelisis (Hamilton, 1822) fish species Food Chemistry Advances Arjina Parbin Sarkar, Sandeep Das, Sanjay Basumatary
2022	Exploring the gut microbiota composition of Indian major carp, rohu (Labeo rohita), under diverse culture conditions Genomics Usha Jyoti Maji, Sriprakash Mohanty, Abhijit Sinha Mahapatra, Hemanta Kumar Mondal, Mrinal Samanta, Nikhil Kumar Maiti
2021	Fish models for investigating nutritional regulation of embryonic development Developmental Biology Misty R. Riddle, Chi-Kuo Hu
2021	Genetic mapping of metabolic traits in the blind Mexican cavefish reveals sex-dependent quantitative trait loci associated with cave adaptation BMC Ecology and Evolution Misty R. Riddle, Ariel Aspiras, Fleur Damen, Suzanne McGaugh, Julius A. Tabin, Clifford J. Tabin
2021	Reduced Oxygen as an Environmental Pressure in the Evolution of the Blind Mexican Cavefish Diversity Tyler Boggs, Joshua Gross
2021	Sampling the fish gill microbiome: a comparison of tissue biopsies and swabs BMC Microbiology Morag Clinton, Adam J. Wyness, Samuel A. M. Martin, Andrew S. Brierley, David E. K. Ferrier
2020	Dark‐rearing uncovers novel gene expression patterns in an obligate cave‐dwelling fish Journal of Experimental Zoology Part B: Molecular and Developmental Evolution Connor R. Sears, Tyler E. Boggs, Joshua B. Gross
2020	The role of the gut microbiome in sustainable teleost aquaculture Proceedings of the Royal Society B: Biological Sciences William Bernard Perry, Elle Lindsay, Christopher James Payne, Christopher Brodie, Raminta Kazlauskaite
2019	A Comparative Metagenomics Study on Gastrointestinal Microbiota in Amphibious Mudskippers and Other Vertebrate Animals Animals Yunhai Yi, Lifeng Liang, Zhilin Wang, Peng Ai, Xinxin You, Chao Bian, Qiong Shi, Bo Dong
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