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2025	Identification and characterization of anaerobically activated promoters in Escherichia coli Journal of Biotechnology Sen Yang, Chao-Hao Guo, Wen-Yue Tong, Xiao-Yun Liu, Jing-Chen Li, Ming Kang
2025	Deep learning guided programmable design of Escherichia coli core promoters from sequence architecture to strength control Nucleic Acids Research Xuan Zhou, Renxu Feng, Nana Ding, Wenyan Cao, Yang Liu, Shenghu Zhou, Yu Deng
2025	HybProm: An attention-assisted hybrid CNN-BiLSTM model for the interpretable prediction of DNA promoter Methods Rentao Luo, Jiawei Liu, Lixin Guan, Mengshan Li
2024	2024 IEEE International Conference on Information Technology, Electronics and Intelligent Communication Systems (ICITEICS) Sara Ranjit
2024	Lecture Notes in Computer Science Tianqi Teng, Feng Yang, Qiang Zhang, Juan Liu
2023	PLPMpro: Enhancing promoter sequence prediction with prompt-learning based pre-trained language model Computers in Biology and Medicine Zhongshen Li, Junru Jin, Wentao Long, Leyi Wei
2023	QPromoters: sequence based prediction of promoter strength in Saccharomyces cerevisiae All Life Devang Haresh Liya, Mirudula Elanchezhian, Mukulika Pahari, Nithishwer Mouroug Anand, Shivani Suresh, Nivedha Balaji, Ashwin Kumar Jainarayanan
2023	iProm-Sigma54: A CNN Base Prediction Tool for σ54 Promoters Cells Muhammad Shujaat, Hoonjoo Kim, Hilal Tayara, Kil To Chong
2023	Predicting Corynebacterium glutamicum promoters based on novel feature descriptor and feature selection technique Frontiers in Microbiology HongFei Li, Jingyu Zhang, Yuming Zhao, Wen Yang
2022	A successful hybrid deep learning model aiming at promoter identification BMC Bioinformatics Ying Wang, Qinke Peng, Xu Mou, Xinyuan Wang, Haozhou Li, Tian Han, Zhao Sun, Xiao Wang
2022	iPromoter-Seqvec: identifying promoters using bidirectional long short-term memory and sequence-embedded features BMC Genomics Thanh-Hoang Nguyen-Vo, Quang H. Trinh, Loc Nguyen, Phuong-Uyen Nguyen-Hoang, Susanto Rahardja, Binh P. Nguyen
2021	A Computational Framework for Identifying Promoter Sequences in Nonmodel Organisms Using RNA-seq Data Sets ACS Synthetic Biology Erin H. Wilson, Joseph D. Groom, M. Claire Sarfatis, Stephanie M. Ford, Mary E. Lidstrom, David A. C. Beck
2021	Recent advances in tuning the expression and regulation of genes for constructing microbial cell factories Biotechnology Advances Seung-Woon Jung, Jinho Yeom, Jong Seong Park, Seung Min Yoo
2021	2021 International Conference on Artificial Intelligence (ICAI) Syed Danish Ali, Kil To Chong
2021	2021 21st International Conference on Control, Automation and Systems (ICCAS) Muhammad Shujaat, Kil To Chong
2021	Importance of the 5′ regulatory region to bacterial synthetic biology applications Microbial Biotechnology Lisa Tietze, Rahmi Lale
2020	Increasing metabolic pathway flux by using machine learning models Current Opinion in Biotechnology Kang Zhou, Wenfa Ng, Yoel Cortés-Peña, Xiaonan Wang
2020	Sequencing enabling design and learning in synthetic biology Current Opinion in Chemical Biology Pierre-Aurélien Gilliot, Thomas E. Gorochowski
2020	Recent advances in genetic engineering tools based on synthetic biology Journal of Microbiology Jun Ren, Jingyu Lee, Dokyun Na
2020	Development of High-Performance Whole Cell Biosensors Aided by Statistical Modeling ACS Synthetic Biology Adokiye Berepiki, Ross Kent, Leopoldo F. M. Machado, Neil Dixon
2019	Classifying Promoters by Interpreting the Hidden Information of DNA Sequences via Deep Learning and Combination of Continuous FastText N-Grams Frontiers in Bioengineering and Biotechnology Nguyen Quoc Khanh Le, Edward Kien Yee Yapp, N. Nagasundaram, Hui-Yuan Yeh
2019	DeePromoter: Robust Promoter Predictor Using Deep Learning Frontiers in Genetics Mhaned Oubounyt, Zakaria Louadi, Hilal Tayara, Kil To Chong