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2025	mimicINT: A workflow for microbe-host protein interaction inference F1000Research Sébastien A. Choteau, Kevin Maldonado, Aurélie Bergon, Marceau Cristianini, Mégane Boujeant, Lilian Drets, Christine Brun, Lionel Spinelli, Andreas Zanzoni
2025	mimicINT: A workflow for microbe-host protein interaction inference F1000Research Sébastien A. Choteau, Kevin Maldonado, Aurélie Bergon, Marceau Cristianini, Mégane Boujeant, Lilian Drets, Christine Brun, Lionel Spinelli, Andreas Zanzoni
2025	Predicting Motif-Mediated Interactions Based on Viral Genomic Composition International Journal of Molecular Sciences Sobia Idrees, Keshav Raj Paudel, Mithila Banik, Newton Suwal, Rajan Thapa, Saroj Bashyal
2024	Bioinformatics prediction and screening of viral mimicry candidates through integrating known and predicted DMI data Archives of Microbiology Sobia Idrees, Keshav Raj Paudel
2024	Proteome‐wide assessment of human interactome as a source of capturing domain–motif and domain‐domain interactions Journal of Cell Communication and Signaling Sobia Idrees, Keshav Raj Paudel
2024	Uncovering domain motif interactions using high‐throughput protein–protein interaction detection methods FEBS Letters Sobia Idrees, Keshav Raj Paudel, Tayyaba Sadaf, Philip M. Hansbro
2024	Prediction of motif-mediated viral mimicry through the integration of host–pathogen interactions Archives of Microbiology Sobia Idrees, Keshav Raj Paudel, Philip M. Hansbro
2024	Prediction of virus–host interactions and identification of hot spot residues of DENV-2 and SH3 domain interactions Archives of Microbiology Mithila Banik, Keshav Raj Paudel, Rajib Majumder, Sobia Idrees
2024	Exploring Viral–Host Protein Interactions as Antiviral Therapies: A Computational Perspective Microorganisms Sobia Idrees, Hao Chen, Nisha Panth, Keshav Raj Paudel, Philip M. Hansbro
2023	An emerging field: Post‐translational modification in microbiome PROTEOMICS Haonan Duan, Xu Zhang, Daniel Figeys
2022	Use of viral motif mimicry improves the proteome-wide discovery of human linear motifs Cell Reports Bishoy Wadie, Vitalii Kleshchevnikov, Elissavet Sandaltzopoulou, Caroline Benz, Evangelia Petsalaki
2021	Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions Frontiers in Microbiology Padhmanand Sudhakar, Kathleen Machiels, Bram Verstockt, Tamas Korcsmaros, Séverine Vermeire
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