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2025	Skin mucus and blood plasma as non-lethal sources of malnutrition protein biomarkers in meagre (Argyrosomus regius) Journal of Proteomics Joana Oliveira, Cláudia Raposo de Magalhães, Denise Schrama, Pedro M. Rodrigues, Marisa Barata, Florbela Soares, Pedro Pousão-Ferreira, Aires Oliva-Teles, Ana Couto
2025	Feed and Feeding for Fish and Shellfish Samuel A.M. Martin, Dean Porter, Elena Mente, Fabio Casu, Aaron M. Watson
2025	Microbial Metabolomics Nitesh Kumar Yadav, Sourabh Debbarma, Parvind Kumar, Jaya Angom, Yilbong Yirang, Arun Bhai Patel
2025	Experimental Approaches of NMR Spectroscopy II Jun Kikuchi
2024	Transcriptome analysis of the Japanese eel (Anguilla japonica) during larval metamorphosis BMC Genomics Ryusuke Sudo, Taiga Asakura, Takashi Ishikawa, Rui Hatakeyama, Atushi Fujiwara, Komaki Inoue, Keiichi Mochida, Kazuharu Nomura
2024	Fecal metagenomic and metabolomic analyses reveal non-invasive biomarkers of Flavobacterium psychrophilum infection in ayu ( Plecoglossus altivelis ) mSphere Mio Takeuchi, Erina Fujiwara-Nagata, Kyohei Kuroda, Kenji Sakata, Takashi Narihiro, Jun Kikuchi
2023	Bile acids as putative social signals in Mozambique tilapia (Oreochromis mossambicus) Physiology & Behavior Samyar Ashouri, José P. Da Silva, Adelino V.M. Canário, Peter C. Hubbard
2023	Influence of lactic-acid bacteria feed supplementation on free amino acid levels in serum and feces of rainbow trout (Oncorhynchus mykiss, Walbaum 1792) Frontiers in Marine Science Gabriel R. A. Carneiro, Constanza Opazo, Gustavo Ramalho Cardoso Do Santos, Henrique Marcelo Gualberto Pereira, Gustavo Monnerat, Rafael Opazo
2023	Estimating eDNA shedding and decay rates for muskellunge in early stages of development Environmental DNA Maxwell L. Wilder, John M. Farrell, Hyatt C. Green
2022	Bioinformatics in Agriculture Priyanka Narad, Romasha Gupta, Abhishek Sengupta
2022	Microbiome and Metabolome Analyses in Different Closed-Circulation Aquarium Systems and Their Network Visualization ACS Omega Daiki Yokoyama, Sosei Suzuki, Taiga Asakura, Jun Kikuchi
2022	Metabolomics in salmonid aquaculture research: Applications and future perspectives Reviews in Aquaculture Ronald Lulijwa, Andrea C. Alfaro, Tim Young
2021	Putative imbalanced amino acid metabolism in rainbow trout long term fed a plant-based diet as revealed by 1H-NMR metabolomics Journal of Nutritional Science Catherine Deborde, Blandine Madji Hounoum, Annick Moing, Mickaël Maucourt, Daniel Jacob, Geneviève Corraze, Françoise Médale, Benoit Fauconneau
2021	Microbiome Composition and Function in Aquatic Vertebrates: Small Organisms Making Big Impacts on Aquatic Animal Health Frontiers in Microbiology Ludek Sehnal, Elizabeth Brammer-Robbins, Alexis M. Wormington, Ludek Blaha, Joe Bisesi, Iske Larkin, Christopher J. Martyniuk, Marie Simonin, Ondrej Adamovsky
2021	The exposome paradigm to predict environmental health in terms of systemic homeostasis and resource balance based on NMR data science RSC Advances Jun Kikuchi, Shunji Yamada
2020	Large-Scale Evaluation of Major Soluble Macromolecular Components of Fish Muscle from a Conventional 1H-NMR Spectral Database Molecules Feifei Wei, Minoru Fukuchi, Kengo Ito, Kenji Sakata, Taiga Asakura, Yasuhiro Date, Jun Kikuchi
2020	Comprehensive Natural Products III Jun Kikuchi, Shunji Yamada
2020	Metabolomics and fish nutrition: a review in the context of sustainable feed development Reviews in Aquaculture Simon Roques, Catherine Deborde, Nadège Richard, Sandrine Skiba‐Cassy, Annick Moing, Benoit Fauconneau
2020	Integrative Metabolomics for Assessing the Effect of Insect (Hermetia illucens) Protein Extract on Rainbow Trout Metabolism Metabolites Simon Roques, Catherine Deborde, Laurence Guimas, Yann Marchand, Nadège Richard, Daniel Jacob, Sandrine Skiba-Cassy, Annick Moing, Benoit Fauconneau
2019	Marine Metagenomics Miyuki Mekuchi, Taiga Asakura, Jun Kikuchi
2019	Methods in Molecular Biology Jun Kikuchi
2018	Intestinal microbiota in rainbow trout,Oncorhynchus mykiss, fed diets with different levels of fish-based and plant ingredients: A correlative approach with some plasma metabolites Aquaculture Nutrition F.-J. Gatesoupe, B. Fauconneau, C. Deborde, B. Madji Hounoum, D. Jacob, A. Moing, G. Corraze, F. Médale
2018	Sample treatment optimization for fish stool metabolomics Journal of Chromatography B Takeshi Hano, Mana Ito, Katsutoshi Ito, Motoharu Uchida
2018	Application of kernel principal component analysis and computational machine learning to exploration of metabolites strongly associated with diet Scientific Reports Yuka Shiokawa, Yasuhiro Date, Jun Kikuchi
2018	Experimental Approaches of NMR Spectroscopy Jun Kikuchi
2018	Application of a Deep Neural Network to Metabolomics Studies and Its Performance in Determining Important Variables Analytical Chemistry Yasuhiro Date, Jun Kikuchi
2018	Metabolomic strategies for aquaculture research: a primer Reviews in Aquaculture Tim Young, Andrea C. Alfaro
2018	Application of ensemble deep neural network to metabolomics studies Analytica Chimica Acta Taiga Asakura, Yasuhiro Date, Jun Kikuchi
2018	Intestinal microbiota composition is altered according to nutritional biorhythms in the leopard coral grouper (Plectropomus leopardus) PLOS ONE Miyuki Mekuchi, Taiga Asakura, Kenji Sakata, Tomofumi Yamaguchi, Kazuhisa Teruya, Jun Kikuchi
2018	Showcasing metabolomic applications in aquaculture: a review Reviews in Aquaculture Andrea C. Alfaro, Tim Young
2018	Regional feature extraction of various fishes based on chemical and microbial variable selection using machine learning Analytical Methods Taiga Asakura, Kenji Sakata, Yasuhiro Date, Jun Kikuchi
2018	Composition of Intestinal Microbiota in Two Lines of Rainbow Trout (Oncorhynchus Mykiss) Divergently Selected for Muscle Fat Content The Open Microbiology Journal Karine Ricaud, Mickael Rey, Elisabeth Plagnes-Juan, Laurence Larroquet, Maxime Even, Edwige Quillet, Sandrine Skiba-Cassy, Stéphane Panserat
2018	Systemic Homeostasis in Metabolome, Ionome, and Microbiome of Wild Yellowfin Goby in Estuarine Ecosystem Scientific Reports Feifei Wei, Kenji Sakata, Taiga Asakura, Yasuhiro Date, Jun Kikuchi
2018	Emerging Issues in Fish Larvae Research Ragnhild I. Vestrum, Birgit Luef, Torunn Forberg, Ingrid Bakke, Olav Vadstein
2018	Environmental metabolomics with data science for investigating ecosystem homeostasis Progress in Nuclear Magnetic Resonance Spectroscopy Jun Kikuchi, Kengo Ito, Yasuhiro Date
2017	1H NMR-based metabolomics studies on the effect of size-fractionated fish protein hydrolysate, fish meal and plant protein in diet for juvenile turbot (Scophthalmus maximusL.) Aquaculture Nutrition Y. Wei, M. Liang, K. Mai, K. Zheng, H. Xu
2017	NMR window of molecular complexity showing homeostasis in superorganisms The Analyst Jun Kikuchi, Shunji Yamada
2017	[Dedicated to Prof. T. Okada and Prof. T. Nishioka: data science in chemistry]Visualizing Individual and Region-specific Microbial–metabolite Relations by Important Variable Selection Using Machine Learning Approaches Journal of Computer Aided Chemistry Satoshi Tsutsui, Yasuhiro Date, Jun Kikuchi
2017	Trans-omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus) Scientific Reports Miyuki Mekuchi, Kenji Sakata, Tomofumi Yamaguchi, Masahiko Koiso, Jun Kikuchi
2017	NMR in Glycoscience and Glycotechnology Jun Kikuchi, Takanori Komatsu
2017	Standardizing the microbiota of fish used in research Laboratory Animals I N Vatsos
2017	Untargeted metabolomics approach for unraveling robust biomarkers of nutritional status in fasted gilthead sea bream (Sparus aurata) PeerJ Ruben Gil-Solsona, Jaime Nácher-Mestre, Leticia Lacalle-Bergeron, Juan Vicente Sancho, Josep Alvar Calduch-Giner, Félix Hernández, Jaume Pérez-Sánchez
2016	SpinCouple: Development of a Web Tool for Analyzing Metabolite Mixtures via Two-Dimensional J-Resolved NMR Database Analytical Chemistry Jun Kikuchi, Yuuri Tsuboi, Keiko Komatsu, Masahiro Gomi, Eisuke Chikayama, Yasuhiro Date
2016	Visualization of Microfloral Metabolism for Marine Waste Recycling Metabolites Tatsuki Ogura, Reona Hoshino, Yasuhiro Date, Jun Kikuchi
2015	Selective Manipulation of the Gut Microbiota Improves Immune Status in Vertebrates Frontiers in Immunology Ana Montalban-Arques, Peter De Schryver, Peter Bossier, Gregor Gorkiewicz, Victoriano Mulero, Delbert Monroe Gatlin, Jorge Galindo-Villegas
2015	Identification of Reliable Components in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS): a Data-Driven Approach across Metabolic Processes Scientific Reports Hiromi Motegi, Yuuri Tsuboi, Ayako Saga, Tomoko Kagami, Maki Inoue, Hideaki Toki, Osamu Minowa, Tetsuo Noda, Jun Kikuchi
2015	Metabolic dynamics analysis by massive data integration: application to tsunami-affected field soils in Japan ACS Chemical Biology Tatsuki Ogura, Yasuhiro Date, Yuuri Tsuboi, Jun Kikuchi
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