Citation sources

Updated weekly. Details via Crossref
Crossref Scopus Google Scholar
483 430 Search
2026
Towards a global barcode reference library for subterranean fauna
Science of The Total Environment
2026
Fungal-mediated home-field advantage in litter decomposition of Solidago canadensis across soil depths
Global Ecology and Conservation
2025
Identification and reconstruction of the core microbiota in natural fermentation systems: a case study of jiuyao
Systems Microbiology and Biomanufacturing
2025
Metagenomics
2025
Role of benthic overwintering cyanobacteria seed stock on estuarine bloom dynamics
Harmful Algae
2025
Distinct Intraspecies Variation of Cutibacterium acnes and Staphylococcus epidermidis in Acne Vulgaris and Healthy Skin
Microorganisms
2025
Endophytic fungi isolated from the roots of the coastal halophyte <i>Sesuvium portulacastrum</i> around Hainan Island enhance salt tolerance in maize through regulating K<sup>+</sup>/Na<sup>+</sup> homeostasis
Tropical Plants
2025
Flood‐Driven Microbial Resurgence: Functional Shifts and Beneficial Taxa in Post‐Flood Agricultural and Residential Soils in Bangladesh
MicrobiologyOpen
2025
Effects of biopolymers, cork, and Rhizobium tropici-derived extracellular polymeric substances on soil microbial communities
Frontiers in Microbiomes
2025
Prediction of seafloor ecological state using 16S nanopore sequencing
Marine Pollution Bulletin
2024
Ciliate diversity in rodrigo de freitas lagoon (Rio de Janeiro, Brazil) from an integrative standpoint
Brazilian Journal of Microbiology
2024
Exploring the impact of urban pollution on ciliate diversity along the Sapucaí River (Minas Gerais, Brazil) via DNA metabarcoding
Molecular Biology Reports
2024
Unraveling the dynamic interplay of microbial communities associated to Lupinus angustifolius in response to environmental and cultivation conditions
Science of The Total Environment
2024
Addition of polyester microplastic fibers to soil alters the diversity and abundance of arbuscular mycorrhizal fungi and affects plant growth and nutrition
European Journal of Soil Biology
2024
The intestinal microflora diversity of aboriginal chickens in Jiangxi province, China
Poultry Science
2024
Considerations for the inclusion of metabarcoding data in the plant protection product risk assessment of the soil microbiome
Integrated Environmental Assessment and Management
2024
Effects of sample storage temperature and duration on the detection of foliar endophytes of tea plants (Camellia sinensis L.) in summer and winter
FEMS Microbiology Letters
2024
Advances in Genetics
2024
Stabilization of microbial network by co-digestion of swine manure and organic wastes
Journal of Environmental Management
2024
Perturbations to common gardens of anaerobic co-digesters reveal relationships between functional resilience and microbial community composition
Applied and Environmental Microbiology
2024
Effects of pesticide treatment against nematode disease on soil bacterial community structure and sweet potato yield and quality
Food and Energy Security
2024
Comparative genomic analysis of Microcystis strain diversity using conserved marker genes
Harmful Algae
2024
Relativity of Evolution
2024
Lecture Notes in Networks and Systems
2024
Long journey of 16S rRNA‐amplicon sequencing toward cell‐based functional bacterial microbiota characterization
iMetaOmics
2024
Deciphering the gut microbiota of zebrafish, the most used fish as a biological model: A meta-analytic approach
Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology
2024
Predicting how varying moisture conditions impact the microbiome of dust collected from the International Space Station
Microbiome
2024
Association between the oral microbiome and brain resting state connectivity in schizophrenia
Schizophrenia Research
2024
The impact of bioaerosol trajectories on microbial community assembly and physicochemical dynamics in the atmosphere
Science of The Total Environment
2024
Mycobiome analysis of leaf, root, and soil of symptomatic oil palm trees (Elaeis guineensis Jacq.) affected by leaf spot disease
Frontiers in Microbiology
2023
Meta-analysis reveals Helicobacter pylori mutual exclusivity and reproducible gastric microbiome alterations during gastric carcinoma progression
Gut Microbes
2023
Bioinformatic and Statistical Analysis of Microbiome Data
2023
Bioinformatic and Statistical Analysis of Microbiome Data
2023
Gut barrier-microbiota imbalances in early life lead to higher sensitivity to inflammation in a murine model of C-section delivery
Microbiome
2023
Insight into gut dysbiosis of patients with inflammatory bowel disease and ischemic colitis
Frontiers in Microbiology
2023
The Mycobiome of Bats in the American Southwest Is Structured by Geography, Bat Species, and Behavior
Microbial Ecology
2023
Lipid mediators derived from DHA alleviate DNCB-induced atopic dermatitis and improve the gut microbiome in BALB/c mice
International Immunopharmacology
2023
Responses of phytoplankton and its satellite bacteria to exogenous ethanol
Journal of Oceanology and Limnology
2023
Citrus Flavonoids Supplementation as an Alternative to Replace Zinc Oxide in Weanling Pigs’ Diets Minimizing the Use of Antibiotics
Animals
2023
Microbial products linked to steatohepatitis are reduced by deletion of nuclear hormone receptor SHP in mice
Journal of Lipid Research
2023
The gut mucin-microbiota interactions: a missing key to optimizing endurance performance
Frontiers in Physiology
2023
Mining the English application learning patterns of college students based on time series clustering
Journal of Intelligent & Fuzzy Systems
2023
Microbiome depiction through user-adapted bioinformatic pipelines and parameters
Journal of Medical Microbiology
2023
Gastrointestinal Microbial Ecology of Weaned Piglets Fed Diets with Different Levels of Glyphosate
Microbiology Spectrum
2023
Mineralogy affects prokaryotic community composition in an acidic metal mine
Microbiological Research
2023
An efficient diazotroph‐derived nitrogen transfer pathway in coral reef system
Limnology and Oceanography
2023
Protist taxonomic and functional diversity in aquatic ecosystems of the Brazilian Atlantic Forest
PeerJ
2023
Yearly variation coupled with social interactions shape the skin microbiome in free-ranging rhesus macaques
Microbiology Spectrum
2023
MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies
Cell Reports Methods
2023
Lung-gut axis of microbiome alterations following co-exposure to ultrafine carbon black and ozone
Particle and Fibre Toxicology
2023
Effects of benthic bioturbation on anammox in nitrogen removal at the sediment-water interface in eutrophic surface waters
Water Research
2023
SCRAPT: an iterative algorithm for clustering large 16S rRNA gene data sets
Nucleic Acids Research
2023
Effect in soil and rhizosphere microbiota of Brachiaria inoculated with Azospirillum brasilense: a pilot trial in two Oxisol types
Soil Research
2022
Use of Bayes factors to evaluate the effects of host genetics, litter and cage on the rabbit cecal microbiota
Genetics Selection Evolution
2022
ACS In Focus
2022
Dataset complexity impacts both MOTU delimitation and biodiversity estimates in eukaryotic 18S rRNA metabarcoding studies
Environmental DNA
2022
Respiratory Medicine
2022
Pitfalls and pointers: An accessible guide to marker gene amplicon sequencing in ecological applications
Methods in Ecology and Evolution
2022
Linking photoacclimation responses and microbiome shifts between depth-segregated sibling species of reef corals
Royal Society Open Science
2022
Soil Depth Exerts Stronger Impact on Bacterial Community than Elevation in Subtropical Forests of Huangshan Mountain
SSRN Electronic Journal
2022
Consumption of Tritordeum Bread Reduces Immunogenic Gluten Intake without Altering the Gut Microbiota
Foods
2022
A novel exploration technique using the microbial fingerprint of shallow sediment to detect hydrocarbon microseepage and predict hydrocarbon charge — An Argentinian case study
Interpretation
2022
Corn rhizosphere microbial community in different long term soil management systems
Applied Soil Ecology
2022
Chronic stress and captivity alter the cloacal microbiome of a wild songbird
Journal of Experimental Biology
2022
Microbiome Changes during Regenerative Endodontic Treatment Using Different Methods of Disinfection
Journal of Endodontics
2022
Amplicon-Based Next-Generation Sequencing as a Diagnostic Tool for the Detection of Phylotypes of Cutibacterium acnes in Orthopedic Implant-Associated Infections
Frontiers in Microbiology
2022
A potential zero water exchange system for recirculating aquarium using a DHS-USB system coupled with ozone
Environmental Technology
2022
The effect of disinfectants on the microbial community on environmental healthcare surfaces using next generation sequencing
American Journal of Infection Control
2022
Endophytic Microbiome Variation Among Single Plant Seeds
Phytobiomes Journal
2022
Gut Microbiome and Metabolome Modulation by Maternal High-Fat Diet and Thermogenic Challenge
International Journal of Molecular Sciences
2022
Impaired central tolerance induces changes in the gut microbiota that exacerbate autoimmune hepatitis
Journal of Autoimmunity
2022
Authors need to be prudent when assigning names to microbial isolates
Antonie van Leeuwenhoek
2022
Lower airway microbiota and decreasing lung function in young Brazilian cystic fibrosis patients with pulmonary Staphylococcus and Pseudomonas infection
PLOS ONE
2022
Soil depth exerts stronger impact on bacterial community than elevation in subtropical forests of Huangshan Mountain
Science of The Total Environment
2022
Obesity and Inflammation: Colorectal Cancer Engines
Current Molecular Pharmacology
2022
Full Issue PDF
Phytobiomes Journal
2022
High-throughput sequencing reveals the main drivers of niche-differentiation of bacterial community in the surface sediments of the northern South China sea
Marine Environmental Research
2022
Effects of paternal high-fat diet and maternal rearing environment on the gut microbiota and behavior
Scientific Reports
2021
Diet- and sex-related changes of gut microbiota composition and functional profiles after 4 months of weight loss intervention
European Journal of Nutrition
2021
Methods in Molecular Biology
2021
Intestinal Dysbiosis Amplifies Acetaminophen-Induced Acute Liver Injury
Cellular and Molecular Gastroenterology and Hepatology
2021
An Insight into Vaginal Microbiome Techniques
Life
2021
Significance of different mixing conditions on performance and microbial communities in anaerobic digester amended with granular and powdered activated carbon
Bioresource Technology
2021
Understanding host-microbiota interactions in the commercial piglet around weaning
Scientific Reports
2021
Altered Gut Microbiota in a Fragile X Syndrome Mouse Model
Frontiers in Neuroscience
2021
The value of gut microbiota to predict feed efficiency and growth of rabbits under different feeding regimes
Scientific Reports
2021
Loss of α-gal during primate evolution enhanced antibody-effector function and resistance to bacterial sepsis
Cell Host & Microbe
2021
Optimizing the quality of clinical studies on oral microbiome: A practical guide for planning, performing, and reporting
Periodontology 2000
2021
Oral seeding and niche-adaptation of middle ear biofilms in health
Biofilm
2021
Identifying the Specific Root Microbiome of the Hyperaccumulator Noccaea brachypetala Growing in Non-metalliferous Soils
Frontiers in Microbiology
2021
From microbial community structure to metabolic inference using paprica
STAR Protocols
2021
Gut Microbiota Differences According to Ultra-Processed Food Consumption in a Spanish Population
Nutrients
2021
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
F1000Research
2021
Ciliate Diversity From Aquatic Environments in the Brazilian Atlantic Forest as Revealed by High-Throughput DNA Sequencing
Microbial Ecology
2021
Authors need to be prudent when assigning names to microbial isolates
Archives of Microbiology
2021
Dietary and Pharmacologic Manipulations of Host Lipids and Their Interaction With the Gut Microbiome in Non-human Primates
Frontiers in Medicine
2021
Early life gut microbiota is associated with rapid infant growth in Hispanics from Southern California
Gut Microbes
2021
Lower airway bacterial microbiome may influence recurrence after resection of early-stage non–small cell lung cancer
The Journal of Thoracic and Cardiovascular Surgery
2021
Rhizosphere Biology
2021
Composition and Potential Function of Fecal Bacterial Microbiota from Six Bird Species
Birds
2021
Alone Yet Not Alone: Frankia Lives Under the Same Roof With Other Bacteria in Actinorhizal Nodules
Frontiers in Microbiology
2021
Effects of the dietary grain content on rumen and fecal microbiota of dairy cows
Canadian Journal of Animal Science
2021
Potato extract inhibits lipase activity and ameliorates gut microbiome dysbiosis and weight gain in mice fed a high-fat diet
Applied Biological Chemistry
2021
Comparative Analyses of Glyphosate Alternative Weed Management Strategies on Plant Coverage, Soil and Soil Biota
Sustainability
2021
Microbiome-Assisted Breeding to Understand Cultivar-Dependent Assembly in Cucurbita pepo
Frontiers in Plant Science
2021
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2021
Database Mining to Unravel the Ecology of the Phylum Chloroflexi in Methanogenic Full Scale Bioreactors
Frontiers in Microbiology
2021
DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions
Microorganisms
2021
Tritordeum breads are well tolerated with preference over gluten‐free breads in non‐celiac wheat‐sensitive patients and its consumption induce changes in gut bacteria
Journal of the Science of Food and Agriculture
2021
What Does 16S rRNA Gene-Targeted Next Generation Sequencing Contribute to the Study of Infective Endocarditis in Heart-Valve Tissue?
Pathogens
2021
Host habitat is the major determinant of the gut microbiome of fish
Microbiome
2021
Methods for exploring the faecal microbiome of premature infants: a review
Maternal Health, Neonatology and Perinatology
2021
Authors Need to be Prudent When Assigning Names to Microbial Isolates
Current Microbiology
2021
Choices on sampling, sequencing, and analyzing DNA influence the estimation of community composition of plant fungal symbionts
Applications in Plant Sciences
2021
Mycobiomes of Young Beech Trees Are Distinguished by Organ Rather Than by Habitat, and Community Analyses Suggest Competitive Interactions Among Twig Fungi
Frontiers in Microbiology
2021
Colonization of carbapenem-resistantKlebsiella pneumoniaein a sink-drain model biofilm system
Infection Control & Hospital Epidemiology
2021
Assessment of Biological Contribution to Natural Recovery of Anthropized Freshwater Sediments From Argentina: Autochthonous Microbiome Structure and Functional Prediction
Frontiers in Microbiology
2021
Frozen Mother’s Own Milk Can Be Used Effectively to Personalize Donor Human Milk
Frontiers in Microbiology
2021
Microbiological Activity for Soil and Plant Health Management
2021
Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective
International Journal of Molecular Sciences
2021
The Use of Ascophyllum nodosum and Bacillus subtilis C-3102 in the Management of Canine Chronic Inflammatory Enteropathy: A Pilot Study
Animals
2021
Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype
The ISME Journal
2021
Associations between Maternal Diet, Body Composition and Gut Microbial Ecology in Pregnancy
Nutrients
2021
Effects of steam-flaked grains on foals’ growth and faecal microbiota
BMC Veterinary Research
2020
Interaction of bacterial communities and indicators of water quality in shoreline sand, sediment, and water of Lake Michigan
Water Research
2020
Response of Microbial Community to Induced Failure of Anaerobic Digesters Through Overloading With Propionic Acid Followed by Process Recovery
Frontiers in Bioengineering and Biotechnology
2020
The supplementation of a corn/barley-based diet with bacterial xylanase did not prevent diarrhoea of ETEC susceptible piglets, but favoured the persistence of Lactobacillus reuteri in the gut
Livestock Science
2020
Denosumab Regulates Gut Microbiota Composition and Cytokines in Dinitrobenzene Sulfonic Acid (DNBS)-Experimental Colitis
Frontiers in Microbiology
2020
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
F1000Research
2020
A novel bioaugmentation technique effectively increases the skin-associated microbial diversity of captive eastern hellbenders
Conservation Physiology
2020
Cyclophosphamide Increases Lactobacillus in the Intestinal Microbiota in Chickens
mSystems
2020
Skin microbiome correlates with bioclimate and Batrachochytrium dendrobatidis infection intensity in Brazil’s Atlantic Forest treefrogs
Scientific Reports
2020
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut
Nature Communications
2020
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses
Ecology and Evolution
2020
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
IMA Fungus
2020
Applicability of an Unmedicated Feeding Program Aimed to Reduce the Use of Antimicrobials in Nursery Piglets: Impact on Performance and Fecal Microbiota
Animals
2020
Bayesian modeling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows
The ISME Journal
2020
Differential Composition of Vaginal Microbiome, but Not of Seminal Microbiome, Is Associated With Successful Intrauterine Insemination in Couples With Idiopathic Infertility: A Prospective Observational Study
Open Forum Infectious Diseases
2020
Systematic Comparisons for Composition Profiles, Taxonomic Levels, and Machine Learning Methods for Microbiome-Based Disease Prediction
Frontiers in Molecular Biosciences
2020
ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition
Methods in Ecology and Evolution
2020
CoMA – an intuitive and user-friendly pipeline for amplicon-sequencing data analysis
PLOS ONE
2020
Methods in Lung Microbiome Research
American Journal of Respiratory Cell and Molecular Biology
2020
Tracking seasonal changes in diversity of pollen allergen exposure: Targeted metabarcoding of a subtropical aerobiome
Science of The Total Environment
2020
The Obesity-Related Gut Bacterial and Viral Dysbiosis Can Impact the Risk of Colon Cancer Development
Microorganisms
2020
Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota
Communications Biology
2020
Comprehensive Analysis Reveals Novel Interactions between Circulating MicroRNAs and Gut Microbiota Composition in Human Obesity
International Journal of Molecular Sciences
2020
Reintroducing mothur: 10 Years Later
Applied and Environmental Microbiology
2020
Artificial light at night erases positive interactions across trophic levels
Functional Ecology
2020
Methane production in the oxygenated water column of a perennially ice‐covered Antarctic lake
Limnology and Oceanography
2020
An introduction to phylosymbiosis
Proceedings of the Royal Society B: Biological Sciences
2020
Colonic microbiome profiles for improved feed efficiency can be identified despite major effects of farm of origin and contemporary group in pigs
Animal
2020
Photobiomodulation modulates inflammation and oral microbiome: a pilot study
Biomarkers
2020
Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection
Journal of Animal Breeding and Genetics
2020
Local community assembly mechanisms shape soil bacterial β diversity patterns along a latitudinal gradient
Nature Communications
2020
Assessment of bacterial and fungal communities in a full-scale thermophilic sewage sludge composting pile under a semipermeable cover
Bioresource Technology
2020
Longitudinal analysis reveals transition barriers between dominant ecological states in the gut microbiome
Proceedings of the National Academy of Sciences
2020
The effects of ectomycorrhizal fungal networks on seedling establishment are contingent on species and severity of overstorey mortality
Mycorrhiza
2020
Community members in activated sludge as determined by molecular probe technology
Water Research
2020
Amphibian Host and Skin Microbiota Response to a Common Agricultural Antimicrobial and Internal Parasite
Microbial Ecology
2020
Differential Colonization and Succession of Microbial Communities in Rock and Soil Substrates on a Maritime Antarctic Glacier Forefield
Frontiers in Microbiology
2020
Comparison of lung microbiota between antineutrophil cytoplasmic antibody-associated vasculitis and sarcoidosis
Scientific Reports
2020
Breeding farm, level of feeding and presence of antibiotics in the feed influence rabbit cecal microbiota
Animal Microbiome
2020
Sex-Specific Associations between Gut Prevotellaceae and Host Genetics on Adiposity
Microorganisms
2020
Impact of in-feed sodium butyrate or sodium heptanoate protected with medium-chain fatty acids on gut health in weaned piglets challenged withEscherichia coliF4+
Archives of Animal Nutrition
2020
Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods
Computational and Structural Biotechnology Journal
2020
Microbial Community Compositions and Geochemistry of Sediments with Increasing Distance to the Hydrothermal Vent Outlet in the Kairei Field
Geomicrobiology Journal
2020
Microbial resistance and resilience in response to environmental changes under the higher intensity of human activities than global average level
Global Change Biology
2020
Effects of reducing dietary crude protein concentration and supplementation with laminarin or zinc oxide on the faecal scores and colonic microbiota in newly weaned pigs
Journal of Animal Physiology and Animal Nutrition
2020
Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets
Animal Microbiome
2020
Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Animals
2020
Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
PLOS ONE
2020
Development of a novel metric for evaluating diatom assemblages in rivers using DNA metabarcoding
Ecological Indicators
2020
Integrating Gut Bacterial Diversity and Captive Husbandry to Optimize Vulture Conservation
Frontiers in Microbiology
2020
Generating amplicon reads for microbial community assessment with next‐generation sequencing
Journal of Applied Microbiology
2020
Seasonality in Spatial Turnover of Bacterioplankton Along an Ecological Gradient in the East China Sea: Biogeographic Patterns, Processes and Drivers
Microorganisms
2020
QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
Current Protocols in Bioinformatics
2020
The selective pressure of quorum quenching on microbial communities in membrane bioreactors
Chemosphere
2020
Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity
PeerJ
2020
Soil bacterial community differences along a coastal restoration chronosequence
Plant Ecology
2020
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB)
Journal of Integrative Bioinformatics
2020
Inter‐breed diversity and temporal dynamics of the faecal microbiota in healthy horses
Journal of Animal Breeding and Genetics
2020
Utilization of multiple microbial tools to evaluate efficacy of restoration strategies to improve recreational water quality at a Lake Michigan Beach (Racine, WI)
Journal of Microbiological Methods
2020
Bacterial community structure of a glacio-marine system in the Arctic (Ny-Ålesund, Svalbard)
Science of The Total Environment
2020
Evaluation of dietary supplementation of a novel microbial muramidase on gastrointestinal functionality and growth performance in broiler chickens
Poultry Science
2020
A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.
Microbiome
2020
Priming for welfare: gut microbiota is associated with equitation conditions and behavior in horse athletes
Scientific Reports
2020
Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation
Frontiers in Cellular and Infection Microbiology
2020
Growth Performance and Adaptability of European Sea Bass (Dicentrarchus labrax) Gut Microbiota to Alternative Diets Free of Fish Products
Microorganisms
2020
Increased loading stress leads to convergence of microbial communities and high methane yields in adapted anaerobic co-digesters
Water Research
2019
Exploring the bacteriome in anthropophilic ticks: To investigate the vectors for diagnosis
PLOS ONE
2019
Magnetite doped granular activated carbon as an additive for high-performance anaerobic digestion
Materials Science for Energy Technologies
2019
Identifying the core bacterial microbiome of hydrocarbon degradation and a shift of dominant methanogenesis pathways in the oil and aqueous phases of petroleum reservoirs of different temperatures from China
Biogeosciences
2019
Cyanobacterial diversity in mat sample obtained from hypersaline desert, Rann of Kachchh
3 Biotech
2019
Air‐side ammonia stripping coupled to anaerobic digestion indirectly impacts anaerobic microbiome
Microbial Biotechnology
2019
Dietary supplementation with strawberry induces marked changes in the composition and functional potential of the gut microbiome in diabetic mice
The Journal of Nutritional Biochemistry
2019
Modulation of Intestinal Microbiota in Solea senegalensis Fed Low Dietary Level of Ulva ohnoi
Frontiers in Microbiology
2019
Potential effects of blood meal host on bacterial community composition in Ixodes scapularis nymphs
Ticks and Tick-borne Diseases
2019
Microbial Associations of Four Species of Algal Symbiont-bearing Foraminifers from the Florida Reef Tract, Usa
Journal of Foraminiferal Research
2019
Stable and Enriched Cenarchaeum symbiosum and Uncultured Betaproteobacteria HF1 in the Microbiome of the Mediterranean Sponge Haliclona fulva (Demospongiae: Haplosclerida)
Microbial Ecology
2019
Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Microbiome
2019
Combination of cannabinoids, delta-9-tetrahydrocannabinol (THC) and cannabidiol (CBD), mitigates experimental autoimmune encephalomyelitis (EAE) by altering the gut microbiome
Brain, Behavior, and Immunity
2019
The Lung Microbiome
2019
Influence of the Intestinal Microbiota on Colonization Resistance to Salmonella and the Shedding Pattern of Naturally Exposed Pigs
mSystems
2019
Gut Microbiota in Human Immunodeficiency Virus–Infected Individuals Linked to Coronary Heart Disease
The Journal of Infectious Diseases
2019
Microbiomes of stony and soft deep-sea corals share rare core bacteria
Microbiome
2019
Unraveling the effects of the gut microbiota composition and function on horse endurance physiology
Scientific Reports
2019
Dysbiosis of Skin Microbiota in Psoriatic Patients: Co-occurrence of Fungal and Bacterial Communities
Frontiers in Microbiology
2019
Changes in Fungal Communities across a Forest Disturbance Gradient
Applied and Environmental Microbiology
2019
Parameters Governing the Community Structure and Element Turnover in Kermadec Volcanic Ash and Hydrothermal Fluids as Monitored by Inorganic Electron Donor Consumption, Autotrophic CO2 Fixation and 16S Tags of the Transcriptome in Incubation Experiments
Frontiers in Microbiology
2019
The gut microbiota is largely independent of host genetics in regulating fat deposition in chickens
The ISME Journal
2019
Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities
Frontiers in Microbiology
2019
Fungal Community Composition and Potential Depth-Related Driving Factors Impacting Distribution Pattern and Trophic Modes from Epi- to Abyssopelagic Zones of the Western Pacific Ocean
Microbial Ecology
2019
A parallel computational framework for ultra-large-scale sequence clustering analysis
Bioinformatics
2019
Efficacy of medium-chain fatty acid salts distilled from coconut oil against two enteric pathogen challenges in weanling piglets
Journal of Animal Science and Biotechnology
2019
Microbiota of human precolostrum and its potential role as a source of bacteria to the infant mouth
Scientific Reports
2019
Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contamination
PLOS ONE
2019
Bacterial and archaeal spatial distribution and its environmental drivers in an extremely haloalkaline soil at the landscape scale
PeerJ
2019
Dietary Saccharomyces cerevisiae boulardii CNCM I-1079 Positively Affects Performance and Intestinal Ecosystem in Broilers during a Campylobacter jejuni Infection
Microorganisms
2019
Enhanced biomethane recovery from fat, oil, and grease through co-digestion with food waste and addition of conductive materials
Chemosphere
2019
Effect of bifidobacterium breve A-1 on anxiety and depressive symptoms in schizophrenia: A proof-of-concept study
Journal of Affective Disorders
2019
Experimental old nest material predicts hoopoe Upupa epops eggshell and uropygial gland microbiota
Journal of Avian Biology
2019
Composition of the intestinal microbiota in extended-spectrum β-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand
International Journal of Antimicrobial Agents
2019
Penicillin Trunk Injection Affects Bacterial Community Structure in Citrus Trees
Microbial Ecology
2019
Apple consumption is associated with a distinctive microbiota, proteomics and metabolomics profile in the gut of Dawley Sprague rats fed a high-fat diet
PLOS ONE
2019
Untapped sponge microbiomes: structure specificity at host order and family levels
FEMS Microbiology Ecology
2019
Multiple stressors interact primarily through antagonism to drive changes in the coral microbiome
Scientific Reports
2019
Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota
Frontiers in Microbiology
2019
Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn’s disease
Scientific Reports
2019
The Effect of Increasing Inclusion Levels of a Fucoidan-Rich Extract Derived from Ascophyllum nodosum on Growth Performance and Aspects of Intestinal Health of Pigs Post-Weaning
Marine Drugs
2019
Uncovering the hidden marine sponge microbiome by applying a multi-primer approach
Scientific Reports
2019
Summer phyto- and bacterioplankton communities during low and high productivity scenarios in the Western Antarctic Peninsula
Polar Biology
2019
Establishment of Coral-Bacteria Symbioses Reveal Changes in the Core Bacterial Community With Host Ontogeny
Frontiers in Microbiology
2019
Microbiota in the apical root canal system of tooth with apical periodontitis
BMC Genomics
2019
Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria
mSphere
2019
Bacterial Community 16S rRNA Gene Sequencing Characterizes Riverine Microbial Impact on Lake Michigan
Frontiers in Microbiology
2019
What is new and relevant for sequencing-based microbiome research? A mini-review
Journal of Advanced Research
2019
Association between the oral microbiome and brain resting state connectivity in smokers
NeuroImage
2019
Response of gastrointestinal fermentative activity and colonic microbiota to protected sodium butyrate and protected sodium heptanoate in weaned piglets challenged with ETEC F4+
Archives of Animal Nutrition
2019
Association between the pig genome and its gut microbiota composition
Scientific Reports
2019
A guide to the application of Hill numbers to DNA‐based diversity analyses
Molecular Ecology Resources
2019
Influence of Environmental Drivers and Potential Interactions on the Distribution of Microbial Communities From Three Permanently Stratified Antarctic Lakes
Frontiers in Microbiology
2019
OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes
DNA Research
2019
Autoinducer-2-mediated quorum sensing partially regulates the toxic shock response of anaerobic digestion
Water Research
2019
High-throughput sequencing of gut microbiota in rainbow trout (Oncorhynchus mykiss) fed larval and pre-pupae stages of black soldier fly (Hermetia illucens)
Aquaculture
2019
Comparison of Two Process Schemes Combining Hydrothermal Treatment and Acidogenic Fermentation of Source-Separated Organics
Molecules
2019
Restoration of belowground fungal communities in reclaimed landscapes of the Canadian boreal forest
Restoration Ecology
2019
Evaluating the Effect of QIIME Balanced Default Parameters on Metataxonomic Analysis Workflows With a Mock Community
Frontiers in Microbiology
2019
Relationship between oral and gut microbiota in elderly people
Immunity, Inflammation and Disease
2019
Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral
PeerJ
2019
Sex-Specific Changes in Gut Microbiome Composition following Blueberry Consumption in C57BL/6J Mice
Nutrients
2018
Predictive Modeling of Microbiome Data Using a Phylogeny-Regularized Generalized Linear Mixed Model
Frontiers in Microbiology
2018
Strongyle Infection and Gut Microbiota: Profiling of Resistant and Susceptible Horses Over a Grazing Season
Frontiers in Physiology
2018
Macroecology to Unite All Life, Large and Small
Trends in Ecology & Evolution
2018
Nematode‐associated microbial taxa do not correlate with host phylogeny, geographic region or feeding morphology in marine sediment habitats
Molecular Ecology
2018
How gut transcriptional function of Drosophila melanogaster varies with the presence and composition of the gut microbiota
Molecular Ecology
2018
Pathogen elimination by probiotic Bacillus via signalling interference
Nature
2018
Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures
Microbiome
2018
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
mSystems
2018
Microbial community assembly in wild populations of the fruit fly Drosophila melanogaster
The ISME Journal
2018
Effect of dark sweet cherry powder consumption on the gut microbiota, short-chain fatty acids, and biomarkers of gut health in obese db/db mice
PeerJ
2018
Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems
Scientific Reports
2018
Metagenomics
2018
Prediction of functional metagenomic composition using archived 16S rDNA sequence data from the gut microbiota of livestock
Livestock Science
2018
Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative
Scientific Data
2018
Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits
Scientific Reports
2018
High-fat, high-fructose, high-cholesterol feeding causes severe NASH and cecal microbiota dysbiosis in juvenile Ossabaw swine
American Journal of Physiology-Endocrinology and Metabolism
2018
Effects of metam sodium fumigation on the abundance, activity, and diversity of soil bacterial communities
Applied Soil Ecology
2018
Methods in Molecular Biology
2018
In tandem effects of activated carbon and quorum quenching on fouling control and simultaneous removal of pharmaceutical compounds in membrane bioreactors
Chemical Engineering Journal
2018
Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions
Scientific Reports
2018
Characterization of bacterial and microbial eukaryotic communities associated with an ephemeral hypoxia event in Taihu Lake, a shallow eutrophic Chinese lake
Environmental Science and Pollution Research
2018
Influence of cigarette smoking on the human duodenal mucosa-associated microbiota
Microbiome
2018
Discrepancies Between Molecular and Morphological Databases of Soil Ciliates Studied for Temperate Grasslands of Central Europe
Protist
2018
Substrate-Induced Response in Biogas Process Performance and Microbial Community Relates Back to Inoculum Source
Microorganisms
2018
High‐throughput environmental sequencing reveals high diversity of litter and moss associated protist communities along a gradient of drainage and tree productivity
Environmental Microbiology
2018
Unbiased Taxonomic Annotation of Metagenomic Samples
Journal of Computational Biology
2018
Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa
Scientific Reports
2018
The effect of resistant starch (RS) on the bovine rumen microflora and isolation of RS-degrading bacteria
Applied Microbiology and Biotechnology
2018
Community profiling of the urinary microbiota: considerations for low-biomass samples
Nature Reviews Urology
2018
A comparative study of prokaryotic diversity and physicochemical characteristics of Devils Hole and the Ash Meadows Fish Conservation Facility, a constructed analog
PLOS ONE
2018
Bifidobacterium longum BB536 alleviated upper respiratory illnesses and modulated gut microbiota profiles in Malaysian pre-school children
Beneficial Microbes
2018
Gut Microbiota of Great Spotted Cuckoo Nestlings is a Mixture of Those of Their Foster Magpie Siblings and of Cuckoo Adults
Genes
2018
Comparison of microbiomes of cold-water corals Primnoa pacifica and Primnoa resedaeformis, with possible link between microbiome composition and host genotype
Scientific Reports
2018
Dysbiosis of the Vaginal Microbiota and Higher Vaginal Kynurenine/Tryptophan Ratio Reveals an Association with Chlamydia trachomatis Genital Infections
Frontiers in Cellular and Infection Microbiology
2018
Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
Microbial Ecology
2018
A Phylogeny-Regularized Sparse Regression Model for Predictive Modeling of Microbial Community Data
Frontiers in Microbiology
2018
Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Scientific Reports
2018
Functional variation in the gut microbiome of wild Drosophila populations
Molecular Ecology
2018
A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota
International Journal of Food Microbiology
2018
The Gut Microbiome in Health and Disease
2018
Rabbit Microbiota Changes Throughout the Intestinal Tract
Frontiers in Microbiology
2018
Associations between Escherichia coli O157 shedding and the faecal microbiota of dairy cows
Journal of Applied Microbiology
2018
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples
Bioinformatics
2018
Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate
Applied Microbiology and Biotechnology
2018
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
Bioinformatics
2018
Experimentally induced metamorphosis in highly regenerative axolotl (ambystoma mexicanum) under constant diet restructures microbiota
Scientific Reports
2018
Bacterial density rather than diversity correlates with hatching success across different avian species
FEMS Microbiology Ecology
2018
Association between functional lactase variants and a high abundance of Bifidobacterium in the gut of healthy Japanese people
PLOS ONE
2018
A nitrogen removal system to limit water exchange for recirculating freshwater aquarium using DHS–USB reactor
Environmental Technology
2018
First Insights into the Gut Microbiota of Mexican Patients with Celiac Disease and Non-Celiac Gluten Sensitivity
Nutrients
2018
Influence of immunogenetics, sex and body condition on the cutaneous microbial communities of two giant salamanders
Molecular Ecology
2018
Dietary live yeast and increased water temperature influence the gut microbiota of rainbow trout
Journal of Applied Microbiology
2018
In vivo microbiome and associated immune markers: New insights into the pathogenesis of vaginal dysbiosis
Scientific Reports
2018
Effects of limestone inclusion on growth performance, intestinal microbiota, and the jejunal transcriptomic profile when fed to weaning pigs
Animal Feed Science and Technology
2018
Quantification of Mercury Bioavailability for Methylation Using Diffusive Gradient in Thin-Film Samplers
Environmental Science & Technology
2018
The impact of chemerin or chemokine-like receptor 1 loss on the mouse gut microbiome
PeerJ
2018
Effect of barley supplementation on the fecal microbiota, caecal biochemistry, and key biomarkers of obesity and inflammation in obese db/db mice
European Journal of Nutrition
2018
Dietary Changes Involving <b><i>Bifidobacterium</i></b> <b><i>longum</i></b> and Other Nutrients Delays Chronic Kidney Disease Progression
American Journal of Nephrology
2018
Impact of Individual Traits, Saturated Fat, and Protein Source on the Gut Microbiome
mBio
2018
Symposium review: Mining metagenomic and metatranscriptomic data for clues about microbial metabolic functions in ruminants
Journal of Dairy Science
2018
Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny
Nature Communications
2017
Randomized clinical trial to evaluate the effect of fecal microbiota transplant for initial Clostridium difficile infection in intestinal microbiome
PLOS ONE
2017
OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
mSphere
2017
Cecal Microbiota in Broilers Fed with Prebiotics
Frontiers in Genetics
2017
Comprehensive Molecular Characterization of Bacterial Communities in Feces of Pet Birds Using 16S Marker Sequencing
Microbial Ecology
2017
DACE: a scalable DP-means algorithm for clustering extremely large sequence data
Bioinformatics
2017
Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China
mSystems
2017
Subgingival Microbiome Colonization and Cytokine Production during Early Dental Implant Healing
mSphere
2017
Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire
The ISME Journal
2017
Methods in Microbiology
2017
Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core Microbiome
Frontiers in Microbiology
2017
Moving beyond de novo clustering in fungal community ecology
New Phytologist
2017
Composition of Micro-eukaryotes on the Skin of the Cascades Frog (Rana cascadae) and Patterns of Correlation between Skin Microbes and Batrachochytrium dendrobatidis
Frontiers in Microbiology
2017
Decreased Taxon-Specific IgA Response in Relation to the Changes of Gut Microbiota Composition in the Elderly
Frontiers in Microbiology
2017
Environmental fluctuations and host skin bacteria shift survival advantage between frogs and their fungal pathogen
The ISME Journal
2017
Cutaneous microbiota of the Japanese giant salamander (Andrias japonicus), a representative of an ancient amphibian clade
Hydrobiologia
2017
Spatio-temporal variability in Mediterranean rocky shore microphytobenthos
Marine Ecology Progress Series
2017
Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus
New Phytologist
2017
Modulation of the tick gut milieu by a secreted tick protein favors Borrelia burgdorferi colonization
Nature Communications
2017
What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions
MycoKeys
2017
Microbiomic differences in tumor and paired-normal tissue in head and neck squamous cell carcinomas
Genome Medicine
2017
Prokaryotic Community Distribution along an Ecological Gradient of Salinity in Surface and Subsurface Saline Soils
Scientific Reports
2017
Diversity is the question, not the answer
The ISME Journal
2017
Temporal changes in cutaneous bacterial communities of terrestrial‐ and aquatic‐phase newts (Amphibia)
Environmental Microbiology
2017
Critical Issues in Mycobiota Analysis
Frontiers in Microbiology
2017
A communal catalogue reveals Earth’s multiscale microbial diversity
Nature
2017
Accuracy of microbial community diversity estimated by closed- and open-reference OTUs
PeerJ
2017
Moderate Exercise Has Limited but Distinguishable Effects on the Mouse Microbiome
mSystems
2017
Personalization of the Microbiota of Donor Human Milk with Mother’s Own Milk
Frontiers in Microbiology
2017
The effect of temperature and retention time on methane production and microbial community composition in staged anaerobic digesters fed with food waste
Biotechnology for Biofuels
2017
Skin microbiota differs drastically between co-occurring frogs and newts
Royal Society Open Science
2017
Sustainable Shale Oil and Gas
2017
Comparative Metagenomics of the Polymicrobial Black Band Disease of Corals
Frontiers in Microbiology
2017
Temperature variation, bacterial diversity and fungal infection dynamics in the amphibian skin
Molecular Ecology
2017
Effects of dietary inclusion of the yeasts Saccharomyces cerevisiae and Wickerhamomyces anomalus on gut microbiota of rainbow trout
Aquaculture
2017
Soy compared with milk protein in a Western diet changes fecal microbiota and decreases hepatic steatosis in obese OLETF rats
The Journal of Nutritional Biochemistry
2017
Host niche may determine disease-driven extinction risk
PLOS ONE
2017
Defining the Core Citrus Leaf- and Root-Associated Microbiota: Factors Associated with Community Structure and Implications for Managing Huanglongbing (Citrus Greening) Disease
Applied and Environmental Microbiology
2017
Revegetation rewilds the soil bacterial microbiome of an old field
Molecular Ecology
2017
Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled byHalobacteriovoraxpredators
PeerJ
2017
Bacterial diversity in Buruli ulcer skin lesions: Challenges in the clinical microbiome analysis of a skin disease
PLOS ONE
2017
The Wheat Microbiome Under Four Management Strategies, and Potential for Endophytes in Disease Protection
Phytobiomes Journal
2017
Subclinical alteration of the cervical–vaginal microbiome in women with idiopathic infertility
Journal of Cellular Physiology
2017
Significant Impacts of Increasing Aridity on the Arid Soil Microbiome
mSystems
2017
The molecular ecology of Microcystis sp. blooms in the San Francisco Estuary
Environmental Microbiology
2017
Cutaneous Bacterial Communities of a Poisonous Salamander: a Perspective from Life Stages, Body Parts and Environmental Conditions
Microbial Ecology
2017
Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist
Nature
2017
Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem
mSystems
2017
Breast tissue, oral and urinary microbiomes in breast cancer
Oncotarget
2017
Gut Microbiome and Putative Resistome of Inca and Italian Nobility Mummies
Genes
2017
Probiotics in Agroecosystem
2017
Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome
Scientific Reports
2017
Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research
mSystems
2017
Detecting macroecological patterns in bacterial communities across independent studies of global soils
Nature Microbiology
2017
Visibiome: an efficient microbiome search engine based on a scalable, distributed architecture
BMC Bioinformatics
2017
Microbial Factors Associated with Postoperative Crohn’s Disease Recurrence
Journal of Crohn's and Colitis
2017
Microbiome measurement: Possibilities and pitfalls
Best Practice & Research Clinical Gastroenterology
2017
Two dynamic regimes in the human gut microbiome
PLOS Computational Biology
2017
Different Amplicon Targets for Sequencing-Based Studies of Fungal Diversity
Applied and Environmental Microbiology
2017
Gut Microbiome of the Canadian Arctic Inuit
mSphere
2017
Strategies to improve reference databases for soil microbiomes
The ISME Journal
2017
Molecular assessment of the fecal microbiota in healthy cats and dogs before and during supplementation with fructo-oligosaccharides (FOS) and inulin using high-throughput 454-pyrosequencing
PeerJ
2017
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
mSystems
2017
Microbiota composition of the koala (Phascolarctos cinereus) ocular and urogenital sites, and their association with Chlamydia infection and disease
Scientific Reports
2017
Microbial composition of spiny ants (Hymenoptera: Formicidae: Polyrhachis) across their geographic range
BMC Evolutionary Biology
2017
Methods in Molecular Biology
2017
Diversity of microflora at the fourth destroyed unit of the ChNPP
Nuclear Physics and Atomic Energy
2017
A wellness study of 108 individuals using personal, dense, dynamic data clouds
Nature Biotechnology
2017
Lecture Notes in Computer Science
2017
The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention
Mucosal Immunology
2017
Faecal bacterial microbiota in patients with cirrhosis and the effect of lactulose administration
BMC Gastroenterology
2017
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
The ISME Journal
2017
Cutaneous Microbial Community Variation across Populations of Eastern Hellbenders (Cryptobranchus alleganiensis alleganiensis)
Frontiers in Microbiology
2017
Fungal diversity and community structure in gut, mound and surrounding soil of fungus-cultivating termites
African Journal of Microbiology Research
2017
Evaluating the accuracy of amplicon-based microbiome computational pipelines on simulated human gut microbial communities
BMC Bioinformatics
2017
The Effects of Weaning Methods on Gut Microbiota Composition and Horse Physiology
Frontiers in Physiology
2017
Lactobacillus johnsonii N6.2 Modulates the Host Immune Responses: A Double-Blind, Randomized Trial in Healthy Adults
Frontiers in Immunology
2017
Full Issue PDF
Phytobiomes Journal
2016
Open-Source Sequence Clustering Methods Improve the State Of the Art
mSystems
2016
Bacterial microbiome of breast milk and child saliva from low-income Mexican-American women and children
Pediatric Research
2016
Aging and serum MCP-1 are associated with gut microbiome composition in a murine model
PeerJ
2016
Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City
mSphere
2016
ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses
Microbiome
2016
Tiny microbes, enormous impacts: what matters in gut microbiome studies?
Genome Biology
2016
Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species
Frontiers in Microbiology
2016
Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System
mBio
2016
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
Nature Medicine
2016
Spatial Heterogeneity of Gut Microbial Composition along the Gastrointestinal Tract in Natural Populations of House Mice
PLOS ONE
2016
Characterization of the stromatolite microbiome from Little Darby Island, The Bahamas using predictive and whole shotgun metagenomic analysis
Environmental Microbiology
2016
Walls talk: Microbial biogeography of homes spanning urbanization
Science Advances
2016
The microbiome of otitis media with effusion
The Laryngoscope
2016
It's all relative: analyzing microbiome data as compositions
Annals of Epidemiology
2016
Endemic hydrothermal vent species identified in the open ocean seed bank
Nature Microbiology
2016
Using the gut microbiota as a novel tool for examining colobine primate GI health
Global Ecology and Conservation
2016
Effect of Dietary Fibers on Cecal Microbiota and Intestinal Tumorigenesis in Azoxymethane Treated A/J Min/+ Mice
PLOS ONE
2016
Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions
Nature Communications
2016
Taxonomic and predicted metabolic profiles of the human gut microbiome in pre-Columbian mummies
FEMS Microbiology Ecology
2016
Metabarcoding of Bacteria Associated with the Acute Oak Decline Syndrome in England
Forests
2016
Composition of the Cutaneous Bacterial Community in Japanese Amphibians: Effects of Captivity, Host Species, and Body Region
Microbial Ecology
2016
Carrageenan Gum and Adherent Invasive Escherichia coli in a Piglet Model of Inflammatory Bowel Disease: Impact on Intestinal Mucosa-associated Microbiota
Frontiers in Microbiology
2016
18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species
Ecology and Evolution
2016
Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity
Proceedings of the Royal Society B: Biological Sciences
2016
Exploring the cockatiel (Nymphicus hollandicus) fecal microbiome, bacterial inhabitants of a worldwide pet
PeerJ
2016
Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice
Nature
2016
The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat
mSystems
2016
Printing-Assisted Surface Modifications of Patterned Ultrafiltration Membranes
ACS Applied Materials & Interfaces
2016
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
GigaScience
2016
Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome
Frontiers in Microbiology
2016
Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice
PeerJ
2016
Gut microbiota are linked to increased susceptibility to hepatic steatosis in low-aerobic-capacity rats fed an acute high-fat diet
American Journal of Physiology-Gastrointestinal and Liver Physiology
2016
Microbiota formed on attached stainless steel coupons correlates with the natural biofilm of the sink surface in domestic kitchens
Canadian Journal of Microbiology
2016
Bacterial community diversity of the deep-sea octocoralParamuricea placomus
PeerJ
2016
Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity
Applied Microbiology and Biotechnology
2016
Bacterial community composition and fhs profiles of low- and high-ammonia biogas digesters reveal novel syntrophic acetate-oxidising bacteria
Biotechnology for Biofuels
2016
Geography and Location Are the Primary Drivers of Office Microbiome Composition
mSystems
2016
Molecular exploration of fecal microbiome in quinoa-supplemented obese mice
FEMS Microbiology Ecology
2016
Microbiome shifts and the inhibition of quorum sensing by Black Band Disease cyanobacteria
The ISME Journal
2016
Characterisation of the gastrointestinal mucosa‐associated microbiota: a novel technique to prevent cross‐contamination during endoscopic procedures
Alimentary Pharmacology & Therapeutics
2016
From Rare to Dominant: a Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation
Applied and Environmental Microbiology
2016
Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods
mSystems
2015
The microbiome of uncontacted Amerindians
Science Advances
2015
Quantitative Microbial Ecology through Stable Isotope Probing
Applied and Environmental Microbiology
2015
The Role of Curcumin in Modulating Colonic Microbiota During Colitis and Colon Cancer Prevention
Inflammatory Bowel Diseases
2015
Manual of Environmental Microbiology
2015
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
PeerJ
2015
Springer Protocols Handbooks
2015
Swarm v2: highly-scalable and high-resolution amplicon clustering
PeerJ
2015
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Microbiome
2015
The microbiome of the human lower airways: a next generation sequencing perspective
World Allergy Organization Journal
2015
Ecological Succession and Viability of Human-Associated Microbiota on Restroom Surfaces
Applied and Environmental Microbiology
2015
The short-chain fatty acid receptor, FFA2, contributes to gestational glucose homeostasis
American Journal of Physiology-Endocrinology and Metabolism
2015
Microbial diversity — exploration of natural ecosystems and microbiomes
Current Opinion in Genetics & Development
2015
Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data
Microbiome
2015
Springer Protocols Handbooks
2015
Euphorbia plant latex is inhabited by diverse microbial communities
American Journal of Botany
2015
The microbiome of otitis media with effusion in Indigenous Australian children
International Journal of Pediatric Otorhinolaryngology
2015
454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils
SpringerPlus
2015
Context and the human microbiome
Microbiome
2015
Dynamics of marine bacterial community diversity of the coastal waters of the reefs, inlets, and wastewater outfalls of southeast Florida
MicrobiologyOpen
Additional cited-by details will be shown when available from Crossref