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2024
Polyphasic molecular approach to the characterization of methanogens in the saliva of Tunisian adults
Anaerobe
2024
Biodiversity patterns of cyanobacterial oligotypes in lakes and rivers: results of a large-scale metabarcoding survey in the Alpine region
Hydrobiologia
2024
Mock microbial community meta‐analysis using different trimming of amplicon read lengths
Environmental Microbiology
2024
Microbial Technology for Agro-Ecosystems
2024
Cadmium contamination decreased bacterial network complexity and stability in coastal reclamation areas
Journal of Hazardous Materials
2024
Core species impact plant health by enhancing soil microbial cooperation and network complexity during community coalescence
Soil Biology and Biochemistry
2024
Exploring the impact of Anaplasma phagocytophilum on colonization resistance of Ixodes scapularis microbiota using network node manipulation
Current Research in Parasitology & Vector-Borne Diseases
2024
Considerations for the inclusion of metabarcoding data in the plant protection product risk assessment of the soil microbiome
Integrated Environmental Assessment and Management
2024
Culture-independent detection of low-abundant Clostridioides difficile in environmental DNA via PCR
Applied and Environmental Microbiology
2024
The microbiota of Amblyomma americanum reflects known westward expansion
PLOS ONE
2024
Quantifying wildlife conflicts with metabarcoding and traditional dietary analyses: applied to seabird predation by long-nosed fur seals
Frontiers in Marine Science
2024
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Molecular Ecology Resources
2024
Dietary fibre supplementation enhances radiotherapy tumour control and alleviates intestinal radiation toxicity
Microbiome
2024
Swarm and UNOISE outperform DADA2 and Deblur for denoising high-diversity marine seafloor samples
ISME Communications
2024
Impact of root canal disinfection on the bacteriome present in primary endodontic infection: A next generation sequencing study
International Endodontic Journal
2024
Warming effects on lizard gut microbiome depend on habitat connectivity
Proceedings of the Royal Society B: Biological Sciences
2023
Human Microbiomes and Disease for the Biomedical Data Scientist
Annual Review of Biomedical Data Science
2023
Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation
mSystems
2023
HPV-related anal cancer is associated with changes in the anorectal microbiome during cancer development
Frontiers in Immunology
2023
Disturbance frequency directs microbial community succession in marine biofilms exposed to shear
mSphere
2023
Evaluation of the rbcL marker for metabarcoding of marine diatoms and inference of population structure of selected genera
Frontiers in Microbiology
2023
Seasonal difference in soil health indicators mediating multidiversity-multifunctionality relationship depends on body size of soil organisms: Evidence from rubber plantation agroforestry system
Soil Biology and Biochemistry
2023
The effect of metabarcoding 18S rRNA region choice on diversity of microeukaryotes including phytoplankton
World Journal of Microbiology and Biotechnology
2023
Planktonic and epilithic prokaryota community compositions in a large temperate river reflect climate change related seasonal shifts
PLOS ONE
2023
The Bacterial DNA Profiling of Chorionic Villi and Amniotic Fluids Reveals Overlaps with Maternal Oral, Vaginal, and Gut Microbiomes
International Journal of Molecular Sciences
2023
Bioinformatic and Statistical Analysis of Microbiome Data
2023
Increased prokaryotic diversity in the Red Sea deep scattering layer
Environmental Microbiome
2023
Application of Various Techniques to Gain Insights Into the Complex Urinary Tract Microbial Communities of Renal Transplant Recipients
Transplantation Direct
2023
Amplicon-based next-generation sequencing for comparative analysis of root canal microbiome of teeth with primary and persistent/secondary endodontic infections
Clinical Oral Investigations
2023
Microbiome depiction through user-adapted bioinformatic pipelines and parameters
Journal of Medical Microbiology
2023
THAPBI PICT—a fast, cautious, and accurate metabarcoding analysis pipeline
PeerJ
2023
Qmatey: an automated pipeline for fast exact matching-based alignment and strain-level taxonomic binning and profiling of metagenomes
Briefings in Bioinformatics
2023
Microbial community dynamics and cycling of plutonium and iron in a seasonally stratified and radiologically contaminated pond
Scientific Reports
2023
MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies
Cell Reports Methods
2023
Ecological and evolutionary inferences from aphid microbiome analyses depend on methods and experimental design
Journal of Sustainable Agriculture and Environment
2023
Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data
Scientific Reports
2023
Critical review of 16S rRNA gene sequencing workflow in microbiome studies: From primer selection to advanced data analysis
Molecular Oral Microbiology
2023
Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil
Scientific Reports
2023
Comparison of survey methods for fungi using metabarcoding and fruit body inventories in an altitudinal gradient
Archives of Microbiology
2023
Methods in Nutrition & Gut Microbiome Research: An American Society for Nutrition Satellite Session [13 October 2022]
Nutrients
2023
An independent evaluation in a CRC patient cohort of microbiome 16S rRNA sequence analysis methods: OTU clustering, DADA2, and Deblur
Frontiers in Microbiology
2023
The newest Oxford Nanopore R10.4.1 full-length 16S rRNA sequencing enables the accurate resolution of species-level microbial community profiling
Applied and Environmental Microbiology
2023
Bioinformatic and Statistical Analysis of Microbiome Data
2023
Tumor-resident Lactobacillus iners confer chemoradiation resistance through lactate-induced metabolic rewiring
Cancer Cell
2023
Determining the most accurate 16S rRNA hypervariable region for taxonomic identification from respiratory samples
Scientific Reports
2023
Reclaimed water influences bacterioplankton and bacteriobenthos communities differently in river networks
Water Research
2023
Monospecies probiotic preparation and administration with downstream analysis of sex-specific effects on gut microbiome composition in mice
STAR Protocols
2023
Presence of an ultra-small microbiome in fermented cabbages
PeerJ
2023
The date palm microbiome: A review
Ecological Genetics and Genomics
2023
Influence of Smoking on Periodontal and Implant Therapy: A Narrative Review
International Journal of Environmental Research and Public Health
2023
Profiling Microbiota from Multiple Sites in the Respiratory Tract to Identify a Biomarker for PM2.5 Nitrate Exposure-Induced Pulmonary Damages
Environmental Science & Technology
2023
Best practice for wildlife gut microbiome research: A comprehensive review of methodology for 16S rRNA gene investigations
Frontiers in Microbiology
2023
Searching for a Consensus Among Inflammatory Bowel Disease Studies: A Systematic Meta-Analysis
Inflammatory Bowel Diseases
2023
MIST: A microbial identification and source tracking system for next‐generation sequencing data
iMeta
2023
Cervicovaginal Microbiota Profiles in Precancerous Lesions and Cervical Cancer among Ethiopian Women
Microorganisms
2023
The association between the respiratory tract microbiome and clinical outcomes in patients with COPD
Microbiological Research
2023
Metagenomic profile of caudal fin morphology of farmed red sea bream Pagrus major
Diseases of Aquatic Organisms
2023
Alterations of the gut microbiota associated with the occurrence and progression of viral hepatitis
Frontiers in Cellular and Infection Microbiology
2023
The Microbiome of Complicated Diverticulitis: An Imbalance of Sulfur-Metabolizing Bacteria
Diseases of the Colon & Rectum
2022
Passive sampling hypothesis did not shape microbial species–area relationships in open microcosm systems
Ecology and Evolution
2022
Dataset complexity impacts both MOTU delimitation and biodiversity estimates in eukaryotic 18S rRNA metabarcoding studies
Environmental DNA
2022
A multipronged next‐generation sequencing metabarcoding approach unearths hyperdiverse and abundant dog pathogen communities in Cambodia
Transboundary and Emerging Diseases
2022
Environmental DNA reveals diversity and abundance of Alternaria species in neighbouring heterogeneous landscapes in Worcester, UK
Aerobiologia
2022
Molecular Genetics and Genomics Tools in Biodiversity Conservation
2022
Microbiome composition of disturbed soils from sandy-gravel mining complexes with different reclamation approaches
One Ecosystem
2022
Role of the Gut Microbiota in the Increased Infant Body Mass Index Induced by Gestational Diabetes Mellitus
mSystems
2022
Sequencing introduced false positive rare taxa lead to biased microbial community diversity, assembly, and interaction interpretation in amplicon studies
Environmental Microbiome
2022
Diversity Patterns of Protists Are Highly Affected by Methods Disentangling Biological Variants: A Case Study in Oligotrich (s.l.) Ciliates
Microorganisms
2022
Effects of ‘Healthy’ Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats
mSystems
2022
Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold
PLOS ONE
2022
Ecological Observations Based on Functional Gene Sequencing Are Sensitive to the Amplicon Processing Method
mSphere
2022
Richness estimation in microbiome data obtained from denoising pipelines
Computational and Structural Biotechnology Journal
2022
Microbiome Dynamics During Chemoradiation Therapy for Anal Cancer
International Journal of Radiation Oncology*Biology*Physics
2022
Authenticity and Typicity of Traditional Cheeses: A Review on Geographical Origin Authentication Methods
Foods
2022
Aging gut microbiota of wild macaques are equally diverse, less stable, but progressively personalized
Microbiome
2022
High nutrient induces virulence in the AHPND-causing Vibrio parahaemolyticus, interpretation from the ecological assembly of shrimp gut microbiota
Fish & Shellfish Immunology
2022
Human milk nutrient fortifiers alter the developing gastrointestinal microbiota of very-low-birth-weight infants
Cell Host & Microbe
2022
A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions
Microbiome
2022
LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data
BMC Bioinformatics
2022
MetaWorks: A flexible, scalable bioinformatic pipeline for high-throughput multi-marker biodiversity assessments
PLOS ONE
2022
Sponging up diversity: Evaluating metabarcoding performance for a taxonomically challenging phylum within a complex cryptobenthic community
Environmental DNA
2022
Gut Microbiome Signatures in the Progression of Hepatitis B Virus-Induced Liver Disease
Frontiers in Microbiology
2022
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data
Nature Methods
2022
Microbiome Analysis via OTU and ASV-Based Pipelines—A Comparative Interpretation of Ecological Data in WWTP Systems
Bioengineering
2022
Subsurface microbial communities as a tool for characterizing regional-scale groundwater flow
Science of The Total Environment
2022
Patterns of Relative Bacterial Richness and Community Composition in Seawater and Marine Sediment Are Robust for Both Operational Taxonomic Units and Amplicon Sequence Variants
Frontiers in Microbiology
2022
Impact of Feeding Postbiotics and Paraprobiotics Produced From Lactiplantibacillus plantarum on Colon Mucosa Microbiota in Broiler Chickens
Frontiers in Veterinary Science
2022
Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation
Frontiers in Cellular and Infection Microbiology
2022
Does filter pore size introduce bias in DNA sequence-based plankton community studies?
Frontiers in Microbiology
2022
Re-Analysis of 16S rRNA Gene Sequence Data Sets Uncovers Disparate Laboratory-Specific Microbiomes Associated with the Yellow Fever Mosquito (Aedes aegypti)
Microbial Ecology
2022
Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data
Frontiers in Bioinformatics
2022
Faecal DNA metabarcoding reveals novel bacterial community patterns of critically endangered Southern River Terrapin, Batagur affinis
PeerJ
2022
DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region
Science of The Total Environment
2022
Host Species and Captivity Distinguish the Microbiome Compositions of a Diverse Zoo-Resident Non-Human Primate Population
Diversity
2022
In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs
Frontiers in Cellular and Infection Microbiology
2022
KTU: K‐mer Taxonomic Units improve the biological relevance of amplicon sequence variant microbiota data
Methods in Ecology and Evolution
2022
Climate change impact on fungi in the atmospheric microbiome
Science of The Total Environment
2021
Gut Microbiota in Psychiatric Disorders: A Systematic Review
Psychosomatic Medicine
2021
Harnessing the plant microbiome to promote the growth of agricultural crops
Microbiological Research
2021
To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography
BMC Bioinformatics
2021
Identifying biases and their potential solutions in human microbiome studies
Microbiome
2021
Metataxonomic profiling of bacterial communities and their predictive functional profiles in traditionally preserved meat products of Sikkim state in India
Food Research International
2021
Cage and maternal effects on the bacterial communities of the murine gut
Scientific Reports
2021
Gut microbiome and amyotrophic lateral sclerosis: A systematic review of current evidence
Journal of Internal Medicine
2021
DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions
Microorganisms
2021
Reprocessing 16S rRNA Gene Amplicon Sequencing Studies: (Meta)Data Issues, Robustness, and Reproducibility
Frontiers in Cellular and Infection Microbiology
2021
OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters
Genes
2021
DNA Metabarcoding Methods for the Study of Marine Benthic Meiofauna: A Review
Frontiers in Marine Science
2021
Characterization of Bacterial Community Dynamics of the Human Mouth Throughout Decomposition via Metagenomic, Metatranscriptomic, and Culturing Techniques
Frontiers in Microbiology
2021
Deciphering Bacterial Community Structure, Functional Prediction and Food Safety Assessment in Fermented Fruits Using Next-Generation 16S rRNA Amplicon Sequencing
Microorganisms
2021
ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples
BMC Microbiology
2021
Optimizing the quality of clinical studies on oral microbiome: A practical guide for planning, performing, and reporting
Periodontology 2000
2021
A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome
Microorganisms
2021
Impact of Streptococcus salivarius K12 on Nasopharyngeal and Saliva Microbiome: A Randomized Controlled Trial
Pediatric Infectious Disease Journal
2021
Debar: A sequence‐by‐sequence denoiser for COI‐5P DNA barcode data
Molecular Ecology Resources
2021
Taxonomic and Functional Dysregulation in Salivary Microbiomes During Oral Carcinogenesis
Frontiers in Cellular and Infection Microbiology
2021
Comprehensive Foodomics
2021
Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
Frontiers in Microbiology
2021
Investigating Bacterial and Free-Living Protozoa Diversity in Biofilms of Hot Water Pipes of Apartment Buildings in the City of Riga (Latvia)
Frontiers in Water
2021
AmpliCI: a high-resolution model-based approach for denoising Illumina amplicon data
Bioinformatics
2021
Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems
Scientific Reports
2021
MAUI‐seq: Metabarcoding using amplicons with unique molecular identifiers to improve error correction
Molecular Ecology Resources
2021
Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities
BMC Bioinformatics
2021
Fungal diversity driven by bark features affects phorophyte preference in epiphytic orchids from southern China
Scientific Reports
2021
Recovery of microbial community profile information hidden in chimeric sequence reads
Computational and Structural Biotechnology Journal
2021
A Combined Application of Molecular Microbial Ecology and Elemental Analyses Can Advance the Understanding of Decomposition Dynamics
Frontiers in Ecology and Evolution
2021
Living in a Puddle of Mud: Isolation and Characterization of Two Novel Caulobacteraceae Strains Brevundimonas pondensis sp. nov. and Brevundimonas goettingensis sp. nov.
Applied Microbiology
2021
Frontiers in Probability and the Statistical Sciences
2021
Microbiomes of different ages in Rendzic Leptosols in the Crimean Peninsula
PeerJ
2021
Composition and distribution of fish environmental DNA in an Adirondack watershed
PeerJ
2021
ASA, CSSA, and SSSA Books
2021
Methods for exploring the faecal microbiome of premature infants: a review
Maternal Health, Neonatology and Perinatology
2021
Bacterial community dynamics of tomato hydroponic greenhouses infested with hairy root disease
FEMS Microbiology Ecology
2021
A primer and discussion on DNA-based microbiome data and related bioinformatics analyses
Peer Community Journal
2021
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Molecular Ecology Resources
2021
Comprehensive Foodomics
2021
Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers
BMC Bioinformatics
2021
The potential of exact sequence variants (ESVs) to interpret and assess the impact of agricultural pressure on stream diatom assemblages revealed by DNA metabarcoding
Ecological Indicators
2021
Impact of Electrolyzed Water on the Microbial Spoilage Profile of Piedmontese Steak Tartare
Microbiology Spectrum
2021
Biodegradable dissolved organic carbon shapes bacterial community structures and co-occurrence patterns in large eutrophic Lake Taihu
Journal of Environmental Sciences
2020
Contrast diversity patterns and processes of microbial community assembly in a river-lake continuum across a catchment scale in northwestern China
Environmental Microbiome
2020
Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention
Scientific Reports
2020
Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis
Frontiers in Ecology and Evolution
2020
Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
mSystems
2020
Microbiota in Dung and Milk Differ Between Organic and Conventional Dairy Farms
Frontiers in Microbiology
2020
Evolutionary signal in the gut microbiomes of 74 bird species from Equatorial Guinea
Molecular Ecology
2020
Counts: an outstanding challenge for log-ratio analysis of compositional data in the molecular biosciences
NAR Genomics and Bioinformatics
2020
Developing standards for the microbiome field
Microbiome
2020
Metagenomic approaches in microbial ecology: an update on whole-genome and marker gene sequencing analyses
Microbial Genomics
2020
Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing
PLOS ONE
2020
Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology
GigaScience
2020
Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota
BMC Microbiology
2020
Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations
Gastroenterology
2020
Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing
Microorganisms
2020
Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing Approach
Frontiers in Microbiology
2020
A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
DNA Research
2020
Restoration of soil microbiome in various soil horizons after crown and surface wildfires
Ecological genetics
2020
Hill-based dissimilarity indices and null models for analysis of microbial community assembly
Microbiome
2020
The Gut Microbiota Communities of Wild Arboreal and Ground-Feeding Tropical Primates Are Affected Differently by Habitat Disturbance
mSystems
2020
Re‐assessing microbiomes in the low‐biomass reproductive niche
BJOG: An International Journal of Obstetrics & Gynaecology
2020
A metagenomic assessment of microbial eukaryotic diversity in the global ocean
Molecular Ecology Resources
2020
coil: an R package for cytochrome c oxidase I (COI) DNA barcode data cleaning, translation, and error evaluation
Genome
2020
Compositional and Quantitative Insights Into Bacterial and Archaeal Communities of South Pacific Deep-Sea Sponges (Demospongiae and Hexactinellida)
Frontiers in Microbiology
2020
Microbiomes in the insectivorous bat species Mops condylurus rapidly converge in captivity
PLOS ONE
2020
Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods
Computational and Structural Biotechnology Journal
2020
Association of Bacteroides acidifaciens relative abundance with high-fibre diet-associated radiosensitisation
BMC Biology
2020
A Systematic Review of Sources of Variability and Uncertainty in eDNA Data for Environmental Monitoring
Frontiers in Ecology and Evolution
2020
Methods in Molecular Biology
2020
A core microbiota dominates a rich microbial diversity in the bovine udder and may indicate presence of dysbiosis
Scientific Reports
2020
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses
Ecology and Evolution
2020
Tissue age, orchard location and disease management influence the composition of fungal and bacterial communities present on the bark of apple trees
Environmental Microbiology
2020
Reference Module in Food Science
2020
The Impact of Smoking on Subgingival Microflora: From Periodontal Health to Disease
Frontiers in Microbiology
2020
Accurate estimation of microbial sequence diversity with Distanced
Bioinformatics
2020
Microbes Associated With Black Soldier Fly (Diptera: Stratiomiidae) Degradation of Food Waste
Environmental Entomology
2020
Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units
BMC Genomics
2020
Advantages and Limitations of 16S rRNA Next-Generation Sequencing for Pathogen Identification in the Diagnostic Microbiology Laboratory: Perspectives from a Middle-Income Country
Diagnostics
2020
Comparison of microbiota in the cloaca, colon, and magnum of layer chicken
PLOS ONE
2020
QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
Current Protocols in Bioinformatics
2020
Evaluation of Two Primer Sets for Amplification of Comammox Nitrospira amoA Genes in Wetland Soils
Frontiers in Microbiology
2019
Improving eDNA‐based protist diversity assessments using networks of amplicon sequence variants
Environmental Microbiology
2019
Storage media and not extraction method has the biggest impact on recovery of bacteria from the oral microbiome
Scientific Reports
2019
Rare Taxa Exhibit Disproportionate Cell-Level Metabolic Activity in Enriched Anaerobic Digestion Microbial Communities
mSystems
2019
Infections and the Rheumatic Diseases
2019
The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence
Microorganisms
2019
Systemic proinflammation after Mycobacterium tuberculosis infection was correlated to the gut microbiome in HIV‐uninfected humans
European Journal of Clinical Investigation
2019
Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing
Frontiers in Microbiology
2019
Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils
Scientific Reports
2019
Issues and current standards of controls in microbiome research
FEMS Microbiology Ecology
2019
Diatom DNA Metabarcoding for Biomonitoring: Strategies to Avoid Major Taxonomical and Bioinformatical Biases Limiting Molecular Indices Capacities
Frontiers in Ecology and Evolution
2019
Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes
Frontiers in Microbiology
2019
Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass
mSystems
2019
The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities
Microbiome
2019
Systematic processing of ribosomal RNA gene amplicon sequencing data
GigaScience
2019
Insight Into the Microbial Co-occurrence and Diversity of 73 Grapevine (Vitis vinifera) Crown Galls Collected Across the Northern Hemisphere
Frontiers in Microbiology
2019
Invited Commentary: Improving the Accessibility of Human Microbiome Project Data Through Integration With R/Bioconductor
American Journal of Epidemiology
2019
The vaginal and fecal microbiomes are related to pregnancy status in beef heifers
Journal of Animal Science and Biotechnology
2018
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2018
Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies
Microbiome
2018
Over 2.5 million COI sequences in GenBank and growing
PLOS ONE
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