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2024
Digital RNA sequencing using unique molecular identifiers enables ultrasensitive RNA mutation analysis
Communications Biology
2023
Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification
Nature Communications
2023
PGNneo: A Proteogenomics-Based Neoantigen Prediction Pipeline in Noncoding Regions
Cells
2023
Reproducible Bioinformatics Analysis Workflows for Detecting IGH Gene Fusions in B-Cell Acute Lymphoblastic Leukaemia Patients
Cancers
2022
Estimating tumor mutational burden from RNA-sequencing without a matched-normal sample
Nature Communications
2022
FVC as an adaptive and accurate method for filtering variants from popular NGS analysis pipelines
Communications Biology
2022
Circulating Tumor Cell Transcriptomics as Biopsy Surrogates in Metastatic Breast Cancer
Annals of Surgical Oncology
2022
Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions
Scientific Data
2022
Widespread redundancy in -omics profiles of cancer mutation states
Genome Biology
2022
Chromosomal imbalances detected via RNA-sequencing in 28 cancers
Bioinformatics
2022
Evaluation of CRISPR gene-editing tools in zebrafish
BMC Genomics
2022
RaScALL: Rapid (Ra) screening (Sc) of RNA-seq data for prognostically significant genomic alterations in acute lymphoblastic leukaemia (ALL)
PLOS Genetics
2022
Cancer Neoantigens: Challenges and Future Directions for Prediction, Prioritization, and Validation
Frontiers in Oncology
2021
Neoantigen prediction in human breast cancer using RNA sequencing data
Cancer Science
2021
Spatial variation in gene expression of Tasmanian devil facial tumors despite minimal host transcriptomic response to infection
BMC Genomics
2021
Predicting MHC I restricted T cell epitopes in mice with NAP-CNB, a novel online tool
Scientific Reports
2021
Identification of cancer-related mutations in human pluripotent stem cells using RNA-seq analysis
Nature Protocols
2021
Transcriptional and Mutational Profiling of B-Other Acute Lymphoblastic Leukemia for Improved Diagnostics
Cancers
2021
Next-generation sequencing for identification of actionable gene mutations in intestinal-type sinonasal adenocarcinoma
Scientific Reports
2021
Integrative Analysis of Gene Expression Data by RNA Sequencing for Differential Diagnosis of Acute Leukemia: Potential Application of Machine Learning
Frontiers in Oncology
2021
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Briefings in Bioinformatics
2021
CCLA: an accurate method and web server for cancer cell line authentication using gene expression profiles
Briefings in Bioinformatics
2020
Finding a suitable library size to call variants in RNA-Seq
BMC Bioinformatics
2020
Immuno-genomic landscape of osteosarcoma
Nature Communications
2020
Molecular-Clinical Correlation in Pediatric Medulloblastoma: A Cohort Series Study of 52 Cases in Taiwan
Cancers
2020
Transcriptomic silencing as a potential mechanism of treatment resistance
JCI Insight
2020
Main Strategies for the Identification of Neoantigens
Cancers
2020
neoANT-HILL: an integrated tool for identification of potential neoantigens
BMC Medical Genomics
2019
Disruption of FBXL5-mediated cellular iron homeostasis promotes liver carcinogenesis
Journal of Experimental Medicine
2019
Advancing Personalized Medicine Through the Application of Whole Exome Sequencing and Big Data Analytics
Frontiers in Genetics
2019
Progress in Molecular Biology and Translational Science
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