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2024
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature
Database
2023
SELFormer: molecular representation learning via SELFIES language models
Machine Learning: Science and Technology
2023
ASCARIS: Positional feature annotation and protein structure-based representation of single amino acid variations
Computational and Structural Biotechnology Journal
2023
How to approach machine learning-based prediction of drug/compound–target interactions
Journal of Cheminformatics
2022
Tissue registration and exploration user interfaces in support of a human reference atlas
Communications Biology
2022
Graph-Based Link Prediction between Human Phenotypes and Genes
Mathematical Problems in Engineering
2022
HPODNets: deep graph convolutional networks for predicting human protein–phenotype associations
Bioinformatics
2022
Machine learning-based prediction of drug approvals using molecular, physicochemical, clinical trial, and patent-related features
Expert Opinion on Drug Discovery
2022
CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature
Journal of Molecular Biology
2022
Investigation of Genetic Causes in Patients with Congenital Heart Disease in Qatar: Findings from the Sidra Cardiac Registry
Genes
2022
Quantitative dissection of multilocus pathogenic variation in an Egyptian infant with severe neurodevelopmental disorder resulting from multiple molecular diagnoses
American Journal of Medical Genetics Part A
2021
Deep semi-supervised learning ensemble framework for classifying co-mentions of human proteins and phenotypes
BMC Bioinformatics
2021
Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations
Human Genetics
2021
Computational Methods for Prediction of Human Protein-Phenotype Associations: A Review
Phenomics
2021
Protein domain-based prediction of drug/compound–target interactions and experimental validation on LIM kinases
PLOS Computational Biology
2020
Data mining powered by the gene ontology
WIREs Data Mining and Knowledge Discovery
2020
HPOLabeler: improving prediction of human protein–phenotype associations by learning to rank
Bioinformatics
2020
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier
PLOS Computational Biology
2019
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology
Journal of Biomedical Informatics
2019
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
Nucleic Acids Research
2018
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
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