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2024
Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome
mSystems
2024
Proteomic assay for rapid characterisation of Staphylococcus aureus antimicrobial resistance mechanisms directly from blood cultures
European Journal of Clinical Microbiology & Infectious Diseases
2024
SARS-CoV-2 infection predisposes patients to coinfection with Staphylococcus aureus
mBio
2024
Genomic investigation and clinical correlates of the in vitro β-lactam: NaHCO 3 responsiveness phenotype among methicillin-resistant Staphylococcus aureus isolates from a randomized clinical trial
Antimicrobial Agents and Chemotherapy
2024
Emergence and clonal expansion of a qacA-harbouring sequence type 45 lineage of methicillin-resistant Staphylococcus aureus
Communications Biology
2024
SaLTy: a novel Staphylococcus aureus Lineage Typer
Microbial Genomics
2024
Insights into the molecular basis of reduced vancomycin susceptibility among three prominent Staphylococcus aureus clonal complexes
Microbiology Spectrum
2024
Evolutionary dynamics of the accessory genomes of Staphylococcus aureus
mSphere
2024
Experimental evolution of Staphylococcus aureus in macrophages: dissection of a conditional adaptive trait promoting intracellular survival
mBio
2024
Different sampling strategies for optimal detection of the overall genetic diversity of methicillin-resistant Staphylococcus aureus
Microbiology Spectrum
2024
Time-calibrated phylogenetic and chromosomal mobilome analyses of Staphylococcus aureus CC398 reveal geographical and host-related evolution
Nature Communications
2024
Bacteriophage-driven emergence and expansion of Staphylococcus aureus in rodent populations
PLOS Pathogens
2024
Demographic fluctuations in bloodstream Staphylococcus aureus lineages configure the mobile gene pool and antimicrobial resistance
npj Antimicrobials and Resistance
2024
Experimentally evolved Staphylococcus aureus shows increased survival in the presence of Pseudomonas aeruginosa by acquiring mutations in the amino acid transporter, GltT
Microbiology
2023
Recombination-mediated dissemination of Methicillin-resistant S. aureus clonal complex 1 in the Egyptian health care settings
Annals of Clinical Microbiology and Antimicrobials
2023
In vitro and in vivo susceptibility to cefalexin and amoxicillin/clavulanate in canine low-level methicillin-resistant Staphylococcus pseudintermedius
Journal of Antimicrobial Chemotherapy
2023
The intra-host evolutionary landscape and pathoadaptation of persistent Staphylococcus aureus in chronic rhinosinusitis
Microbial Genomics
2023
Benchmarking of two bioinformatic workflows for the analysis of whole-genome sequenced Staphylococcus aureus collected from patients with suspected sepsis
BMC Infectious Diseases
2023
Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains
Microbiology Spectrum
2023
Leaky barriers to gene sharing between locally co-existing coagulase-negative Staphylococcus species
Communications Biology
2023
Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes
BMC Bioinformatics
2023
Novel multidrug-resistant sublineages of Staphylococcus aureus clonal complex 22 discovered in India
mSphere
2023
Genomic epidemiology of Staphylococcus aureus isolated from bloodstream infections in South America during 2019 supports regional surveillance
Microbial Genomics
2023
Efflux pump gene amplifications bypass necessity of multiple target mutations for resistance against dual-targeting antibiotic
Nature Communications
2023
Pre-epidemic evolution of the MRSA USA300 clade and a molecular key for classification
Frontiers in Cellular and Infection Microbiology
2023
Staphylococcal diversity in atopic dermatitis from an individual to a global scale
Cell Host & Microbe
2023
Staphylococcus aureus host interactions and adaptation
Nature Reviews Microbiology
2023
Multi-host infection and phylogenetically diverse lineages shape the recombination and gene pool dynamics of Staphylococcus aureus
BMC Microbiology
2023
Dynamics of the MRSA Population in a Chilean Hospital: a Phylogenomic Analysis (2000–2016)
Microbiology Spectrum
2022
Species-Scale Genomic Analysis of Staphylococcus aureus Genes Influencing Phage Host Range and Their Relationships to Virulence and Antibiotic Resistance Genes
mSystems
2022
Linkage disequilibrium between rare mutations
Genetics
2022
Accessory Genome Dynamics of Local and Global Staphylococcus pseudintermedius Populations
Frontiers in Microbiology
2022
Meaningful Use of Pathogen Genomic Data
mBio
2022
Multiclonal human origin and global expansion of an endemic bacterial pathogen of livestock
Proceedings of the National Academy of Sciences
2022
Selection of Relevant Bacterial Strains for Novel Therapeutic Testing: a Guidance Document for Priority Cystic Fibrosis Lung Pathogens
Current Clinical Microbiology Reports
2022
Genome Evolution of Invasive Methicillin-Resistant Staphylococcus aureus in the Americas
Microbiology Spectrum
2022
Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations
Microbiology Spectrum
2021
MRSA strains with distinct accessory genes predominate at different ages in cystic fibrosis
Pediatric Pulmonology
2021
Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA)
PeerJ
2021
Evolutionary Processes Driving the Rise and Fall of Staphylococcus aureus ST239, a Dominant Hybrid Pathogen
mBio
2021
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks
Frontiers in Microbiology
2021
Genes Influencing Phage Host Range in Staphylococcus aureus on a Species-Wide Scale
mSphere
2020
Genotypic and Phenotypic Diversity of Staphylococcus aureus Isolates from Cystic Fibrosis Patient Lung Infections and Their Interactions with Pseudomonas aeruginosa
mBio
2020
Comparative genomics in infectious disease
Current Opinion in Microbiology
2020
Using genomics to understand meticillin- and vancomycin-resistant Staphylococcus aureus infections
Microbial Genomics
2020
Population Analysis of Staphylococcus aureus Reveals a Cryptic, Highly Prevalent Superantigen SElW That Contributes to the Pathogenesis of Bacteremia
mBio
2020
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
mSystems
2020
WhatsGNU: a tool for identifying proteomic novelty
Genome Biology
2020
NAuRA: Genomic Tool to Identify Staphylococcal Enterotoxins in Staphylococcus aureus Strains Responsible for FoodBorne Outbreaks
Frontiers in Microbiology
2020
Accelerating Binary String Comparisons with a Scalable, Streaming-Based System Architecture Based on FPGAs
Algorithms
2020
Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains
PeerJ
2019
Whole-Genome Sequences of Staphylococcus aureus Isolates from Cystic Fibrosis Lung Infections
Microbiology Resource Announcements
2019
Gram-Positive Pathogens
2019
Interaction between Streptococcus pneumoniae and Staphylococcus aureus Generates·OH Radicals That Rapidly Kill Staphylococcus aureus Strains
Journal of Bacteriology
2019
Human mAbs to Staphylococcus aureus IsdA Provide Protection Through Both Heme-Blocking and Fc-Mediated Mechanisms
The Journal of Infectious Diseases
2019
Determinants of Phage Host Range in Staphylococcus Species
Applied and Environmental Microbiology
2019
Genome-Based Prediction of Bacterial Antibiotic Resistance
Journal of Clinical Microbiology
2019
Invasive NontypeableHaemophilus influenzaeInfection Among Adults With HIV in Metropolitan Atlanta, Georgia, 2008-2018
JAMA
2019
Staphylococci: Evolving Genomes
Microbiology Spectrum
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