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2025
The rapid detection of a neonatal unit outbreak of a wild-type Klebsiella variicola using decentralized Oxford Nanopore sequencing
Antimicrobial Resistance & Infection Control
2025
Comparison of Illumina and Oxford Nanopore sequencing data quality for Clostridioides difficile genome analysis and their application for epidemiological surveillance
BMC Genomics
2025
Assembly-free typing of Nanopore and Illumina data through proximity scoring with KMA
NAR Genomics and Bioinformatics
2025
A One Health approach for the genomic characterization of antibiotic-resistant Campylobacter isolates using Nanopore whole-genome sequencing
Frontiers in Microbiology
2025
Microbial composition and dynamics in environmental samples from a ready-to-eat food production facility with a long-term colonization of Listeria monocytogenes
Food Microbiology
2024
Whole-genome long-read sequencing to unveil Enterococcus antimicrobial resistance in dairy cattle farms exposed a widespread occurrence of Enterococcus lactis
Microbiology Spectrum
2024
Early identification of a ward-based outbreak of Clostridioides difficile using prospective multilocus sequence type-based Oxford Nanopore genomic surveillance
Infection Control & Hospital Epidemiology
2024
Unified metagenomic method for rapid detection of microorganisms in clinical samples
Communications Medicine
2024
Oxford nanopore next generation sequencing in a front-line clinical microbiology laboratory without on-site bioinformaticians
Pathology
2024
Draft genomes of Paenibacillus larvae isolated from honeybee colonies ( Apis mellifera ) in Fiji
Microbiology Resource Announcements
2024
Rapid identification and subsequent contextualization of an outbreak of methicillin-resistant Staphylococcus aureus in a neonatal intensive care unit using nanopore sequencing
Microbial Genomics
2023
Monitoring within-farm transmission dynamics of antimicrobial-resistant Campylobacter in dairy cattle using broth microdilution and long-read whole genome sequencing
Scientific Reports
2023
Complete genomes of Pasteurella multocida isolates from porcine, bovine, and cervine samples found in New Zealand farms
Microbiology Resource Announcements
2022
Real-Time On-Site Diagnosis of Quarantine Pathogens in Plant Tissues by Nanopore-Based Sequencing
Pathogens
2022
Within-farm dynamics of ESBL-producing Escherichia coli in dairy cattle: Resistance profiles and molecular characterization by long-read whole-genome sequencing
Frontiers in Microbiology
2022
Rapid and Routine Molecular Typing Using Multiplex Polymerase Chain Reaction and MinION Sequencer
Frontiers in Microbiology
2022
Systems-Based Approach for Optimization of Assembly-Free Bacterial MLST Mapping
Life
2021
Culture-Independent Genotyping, Virulence and Antimicrobial Resistance Gene Identification of Staphylococcus aureus from Orthopaedic Implant-Associated Infections
Microorganisms
2021
Nanopore sequencing for the detection and identification of Xylella fastidiosa subspecies and sequence types from naturally infected plant material
Plant Pathology
2021
Rapid nanopore-based DNA sequencing protocol of antibiotic-resistant bacteria for use in surveillance and outbreak investigation
Microbial Genomics
2020
Microbial Forensics
2020
Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing
Scientific Reports
2019
Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
GigaScience
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