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2025
Target enrichment museomics of the Asian long‐horned beetle and its relatives (Cerambycidae: Anoplophora) reveals two independent origins of life in the cold
Systematic Entomology
2025
Navigating phylogenetic conflict and evolutionary inference in plants with target-capture data
Australian Systematic Botany
2025
Around the World in 26 Million Years: Diversification and Biogeography of Pantropical Grass‐Yellow Eurema Butterflies (Pieridae: Coliadinae)
Journal of Biogeography
2025
Subfamily evolution analysis using nuclear and chloroplast data from the same reads
Scientific Reports
2025
Climbing Higher: Exploring Northern Andean Origin and Non‐Floral Trait Evolution in a Rapid, Recent Angiosperm Radiation
Journal of Biogeography
2025
Target sequence capture informs generic delimitation and hybridization in the tribe Lasiopetaleae (Malvaceae)
Molecular Phylogenetics and Evolution
2025
UnFATE: A Comprehensive Probe Set and Bioinformatics Pipeline for Phylogeny Reconstruction and Multilocus Barcoding of Filamentous Ascomycetes (Ascomycota, Pezizomycotina)
Systematic Biology
2025
NewtCap: An Efficient Target Capture Approach to Boost Genomic Studies in Salamandridae (True Salamanders and Newts)
Ecology and Evolution
2025
Target capture sequencing clarifies key relationships in the Eriostemon group (Rutaceae: Zanthoxyloideae) and supports a reclassification of Philotheca, including the recognition of two new genera
TAXON
2025
Pervasive horizontal transmission of Wolbachia in natural populations of closely related and widespread tropical skipper butterflies
BMC Microbiology
2024
Phylogenomics and phylogeographic model testing using convolutional neural networks reveal a history of recent admixture in the Canarian Kleinia neriifolia
Molecular Ecology
2024
GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome
Plant Methods
2024
Once upon a fly: The biogeographical odyssey of Labrundinia (Chironomidae, Tanypodinae), an aquatic non-biting midge towards diversification
Molecular Phylogenetics and Evolution
2024
Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes
Systematic Biology
2024
The sweet tabaiba or there and back again: phylogeographical history of the Macaronesian Euphorbia balsamifera
Annals of Botany
2024
A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data
Systematic Botany
2024
The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-Transhimalaya biota?
Molecular Phylogenetics and Evolution
2024
Development of a Target Enrichment Probe Set for Conifer (REMcon)
Biology
2024
Phylogenetic insights into the Salicaceae: The evolution of willows and beyond
Molecular Phylogenetics and Evolution
2023
Parallel evolution and cryptic diversification in a common and widespread Amazonian tree, Protium subserratum
Molecular Ecology
2023
Diversification and introgression in four chromosomal taxa of the Pearson’s horseshoe bat (Rhinolophus pearsoni) group
Molecular Phylogenetics and Evolution
2023
ExRec: a python pipeline for generating recombination-filtered multi-locus datasets
Bioinformatics Advances
2023
Target capture and genome skimming for plant diversity studies
Applications in Plant Sciences
2023
From southern Africa and beyond: Historical biogeography of a monocotyledonous bulbous geophyte
Journal of Biogeography
2023
Resolving the phylogeny of Thladiantha (Cucurbitaceae) with three different target capture pipelines
BMC Ecology and Evolution
2022
Independent evolutionary transitions to pueriparity across multiple timescales in the viviparous genus Salamandra
Molecular Phylogenetics and Evolution
2022
Genomic library preparation and hybridization capture of formalin‐fixed tissues and allozyme supernatant for population genomics and considerations for combining capture‐ and RADseq‐based single nucleotide polymorphism data sets
Molecular Ecology Resources
2022
Easy353: A Tool to Get Angiosperms353 Genes for Phylogenomic Research
Molecular Biology and Evolution
2022
A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae
Genes
2022
Predictors of sequence capture in a large-scale anchored phylogenomics project
Frontiers in Ecology and Evolution
2022
Phylogenomics and generic limits of Dypsidinae (Arecaceae), the largest palm radiation in Madagascar
TAXON
2022
A New Pipeline for Removing Paralogs in Target Enrichment Data
Systematic Biology
2022
Recent and local diversification of Central American understorey palms
Global Ecology and Biogeography
2022
A rodent anchored hybrid enrichment probe set for a range of phylogenetic utility: From order to species
Molecular Ecology Resources
2022
Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses
Molecular Phylogenetics and Evolution
2022
Peeling back the layers: First phylogenomic insights into the Ledebouriinae (Scilloideae, Asparagaceae)
Molecular Phylogenetics and Evolution
2021
HybPhaser: A workflow for the detection and phasing of hybrids in target capture data sets
Applications in Plant Sciences
2021
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
Systematic Biology
2021
Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and 250+ taxa
TAXON
2021
Phylogenomics of the Palm Tribe Lepidocaryeae (Calamoideae: Arecaceae) and Description of a New Species ofMauritiella
Systematic Botany
2021
Do Alignment and Trimming Methods Matter for Phylogenomic (UCE) Analyses?
Systematic Biology
2021
New targets acquired: Improving locus recovery from the Angiosperms353 probe set
Applications in Plant Sciences
2021
A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics
Molecular Ecology
2020
A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project
Frontiers in Genetics
2020
A two‐tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae
Applications in Plant Sciences
2020
Phylogenomic approaches reveal how climate shapes patterns of genetic diversity in an African rain forest tree species
Molecular Ecology
2020
Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae)
Plants
2020
Biogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysis
Journal of Systematics and Evolution
2020
Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus)
Molecular Ecology
2019
Repeated Evolution Versus Common Ancestry: Sex Chromosome Evolution in the Haplochromine CichlidPseudocrenilabrus philander
Genome Biology and Evolution
2019
Understanding UCEs: A Comprehensive Primer on Using Ultraconserved Elements for Arthropod Phylogenomics
Insect Systematics and Diversity
2019
Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies
PeerJ
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