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2025
An annotated reference library for supporting DNA metabarcoding analysis of aquatic macroinvertebrates in French freshwater environments
Metabarcoding and Metagenomics
2025
Metabarcoding Analysis of Arthropod Pollinator Diversity: A Methodological Comparison of eDNA Derived From Flowers and DNA Derived From Bulk Samples of Insects
Molecular Ecology
2024
Metabarcoding: opportunities for accelerating monitoring and understanding insect tropical biodiversity
Journal of Insect Conservation
2023
Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies
PeerJ
2023
taxalogue: a toolkit to create comprehensive CO1 reference databases
PeerJ
2023
An automated workflow to assess completeness and curate GenBank for environmental DNA metabarcoding: The marine fish assemblage as case study
Environmental DNA
2022
NSDPY: A python package to download DNA sequences from NCBI
SoftwareX
2021
DNA Metabarcoding Reveals Broad Presence of Plant Pathogenic Oomycetes in Soil From Internationally Traded Plants
Frontiers in Microbiology
2021
Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem
Molecular Ecology Resources
2020
MetaCurator: A hidden Markov model‐based toolkit for extracting and curating sequences from taxonomically‐informative genetic markers
Methods in Ecology and Evolution
2020
MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding
Scientific Data
2019
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
GigaScience
2019
Quantitative multi‐locus metabarcoding and waggle dance interpretation reveal honey bee spring foraging patterns in Midwest agroecosystems
Molecular Ecology
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