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2024
Characterization of gill bacterial microbiota in wild Arctic char ( Salvelinus alpinus ) across lakes, rivers, and bays in the Canadian Arctic ecosystems
Microbiology Spectrum
2024
Investigating the relationship between microbial network features of giant kelp “seedbank” cultures and subsequent farm performance
PLOS ONE
2024
Effects of cashew nut shell extract and monensin on in vitro ruminal fermentation, methane production, and ruminal bacterial community
Journal of Dairy Science
2024
Diversity, Distribution, and Chromosomal Rearrangements of TRIP1 Repeat Sequences in Escherichia coli
Genes
2024
Effects of monensin and cashew nut-shell extract on bacterial community composition in a dual-flow continuous culture system
Translational Animal Science
2024
The Composition and Diversity of the Rhizosphere Bacterial Community of Ammodendron bifolium Growing in the Takeermohuer Desert Are Different from Those in the Nonrhizosphere
Microbial Ecology
2024
Bacillus‐derived consortium enhances Ginkgo biloba's health and resistance to Alternaria tenuissima
Pest Management Science
2024
Microdiverse bacterial clades prevail across Antarctic wetlands
Molecular Ecology
2024
Encyclopedia of Biodiversity
2024
The influence of pre- and postnatal exposure to air pollution and green spaces on infant’s gut microbiota: Results from the MAMI birth cohort study
Environmental Research
2024
Nicotinic acid changes rumen fermentation and apparent nutrient digestibility by regulating rumen microbiota in Xiangzhong black cattle
Animal Bioscience
2023
Methods in Molecular Biology
2023
Chronic exposure to ampicillin alters lung microbial composition in laboratory rat
Experimental Lung Research
2023
High-throughput sequencing and marker pigment analysis of freshwater phytoplankton: A direct comparison with microscopic count data in the tropical crater lakes of Western Uganda
Limnologica
2023
Amplicon sequencing allows differential quantification of closely related parasite species: an example from rodent Coccidia (Eimeria)
Parasites & Vectors
2023
Glyphosate versus glyphosate based ionic liquids: Effect of cation on glyphosate biodegradation, soxA and phnJ genes abundance and microbial populations changes during soil bioaugmentation
Chemosphere
2023
Challenges and insights in the exploration of the low abundance human ocular surface microbiome
Frontiers in Cellular and Infection Microbiology
2023
Exploring characteristics of value-added production of anthraquinones in rhubarb via fermentation: Compartmental modelling and molecular docking analysis
Journal of the Taiwan Institute of Chemical Engineers
2023
Changing microbiome community structure and functional potential during permafrost thawing on the Tibetan Plateau
FEMS Microbiology Ecology
2023
The relative abundance of fecal bacterial species belonging to the Firmicutes and Bacteroidetes phyla is related to plasma levels of bile acids in young adults
Metabolomics
2023
Dam construction alters planktonic microbial predator‒prey communities in the urban reaches of the Yangtze River
Water Research
2023
Composition and Distribution Characteristics of Rhizosphere Bacterial Community of Ammodendron bifolium Growing in Takeermohuer Desert Are Different from Those in Non-rhizosphere
Microbial Ecology
2023
The Effect of Residual Pesticide Application on Microbiomes of the Storage Mite Tyrophagus putrescentiae
Microbial Ecology
2023
Soil bacterial communities are more sensitive to short-term nitrogen deposition than fungal communities in subtropical Chinese fir forests
Forest Ecology and Management
2023
Effect of bovine respiratory disease on the respiratory microbiome: a meta-analysis
Frontiers in Cellular and Infection Microbiology
2023
Guidelines for microbiome studies in renal physiology
American Journal of Physiology-Renal Physiology
2023
Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
Frontiers in Microbiology
2023
Microsporidian Infection in Mosquitoes (Culicidae) Is Associated with Gut Microbiome Composition and Predicted Gut Microbiome Functional Content
Microbial Ecology
2023
In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea
Microbiome
2023
The role of microbiome-host interactions in the development of Alzheimer´s disease
Frontiers in Cellular and Infection Microbiology
2023
Composting reduces the risks of antibiotic resistance genes in maize seeds posed by gentamicin fermentation waste
Science of The Total Environment
2023
Simultaneous analysis of the intestinal parasites and diet through eDNA metabarcoding
Integrative Zoology
2023
Reconstructing the landscape of gut microbial species across 29,000 diverse individuals
Nucleic Acids Research
2022
Propagation, detection and correction of errors using the sequence database network
Briefings in Bioinformatics
2022
The Effect of Thermal Stress on the Physiology and Bacterial Communities of Two Key Mediterranean Gorgonians
Applied and Environmental Microbiology
2022
In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs
Frontiers in Cellular and Infection Microbiology
2022
Mucin modifies microbial composition and improves metabolic functional potential of a synthetic gut microbial ecosystem
Journal of Applied Biological Chemistry
2022
Expanding Horizon of Cyanobacterial Biology
2022
Salivary microbiota analysis of patients with membranous nephropathy
Molecular Medicine Reports
2022
Applying meta-data of soybean grain in origin trace and quarantine inspection
Food Research International
2022
The salivary microbiome shows a high prevalence of core bacterial members yet variability across human populations
npj Biofilms and Microbiomes
2022
Influence of 16S rRNA reference databases in amplicon-based environmental microbiome research
Biotechnology Letters
2022
Effects of bacterial-derived antimicrobial solutions on shelf-life, microbiota and sensory attributes of raw chicken legs under refrigerated storage condition
International Journal of Food Microbiology
2022
16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences
Frontiers in Bioinformatics
2022
A manager’s guide to using eDNA metabarcoding in marine ecosystems
PeerJ
2022
Altering Dietary Soluble Protein Levels With Decreasing Crude Protein May Be a Potential Strategy to Improve Nitrogen Efficiency in Hu Sheep Based on Rumen Microbiome and Metabolomics
Frontiers in Nutrition
2022
Difficulties Of Enterobacteriaceae Genome Annotation In Deciphering Gastrointestinal Microbiome Datasets Obtained By 16S RRNA Gene Amplicon Sequencing
Russian Open Medical Journal
2022
The Negative Effects of Feces-Associated Microorganisms on the Fitness of the Stored Product Mite Tyrophagus putrescentiae
Frontiers in Microbiology
2022
Plasma Levels of Omega-3 and Omega-6 Derived Oxylipins Are Associated with Fecal Microbiota Composition in Young Adults
Nutrients
2022
Distribution of Core Root Microbiota of Tibetan Hulless Barley along an Altitudinal and Geographical Gradient in the Tibetan Plateau
Microorganisms
2022
Fate of bacterial community, antibiotic resistance genes and gentamicin residues in soil after three-year amendment using gentamicin fermentation waste
Chemosphere
2022
Disruption and recovery of river planktonic community during and after the COVID-19 outbreak in Wuhan, China
ISME Communications
2022
High-Resolution Indicators of Soil Microbial Responses to N Fertilization and Cover Cropping in Corn Monocultures
Agronomy
2022
Gut Microbiota and Associated Mucosal Immune Response in Eosinophilic Granulomatosis with Polyangiitis (EGPA)
Biomedicines
2022
Improving environmental monitoring of Vibrionaceae in coastal ecosystems through 16S rRNA gene amplicon sequencing
Environmental Science and Pollution Research
2022
The Influence Mechanism of Vegetation Type on the Characteristics of nirS-Type Denitrifying Microbial Communities in Qinghai Lake Wetlands
Current Microbiology
2022
Good Microbes in Medicine, Food Production, Biotechnology, Bioremediation, and Agriculture
2022
Microbial generalists and specialists differently contribute to the community diversity in farmland soils
Journal of Advanced Research
2022
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data
Nature Methods
2022
Effects of drinking water supplementation with Lactobacillus reuteri, and a mixture of reuterin and microcin J25 on the growth performance, caecal microbiota and selected metabolites of broiler chickens
Journal of Animal Science and Biotechnology
2021
Cydrasil 3, a curated 16S rRNA gene reference package and web app for cyanobacterial phylogenetic placement
Scientific Data
2021
BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities
mSystems
2021
Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem
Molecular Ecology Resources
2021
Gut Microbiota Parameters Potentially Useful in Clinical Perspective
Microorganisms
2021
Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
Scientific Reports
2021
Application and Integration of Omics-powered Diagnostics in Clinical and Public Health Microbiology
2021
Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in mice
Scientific Reports
2021
Cardinium inhibits Wolbachia in its mite host, Tyrophagus putrescentiae, and affects host fitness
FEMS Microbiology Ecology
2021
Dietary Contamination with a Neonicotinoid (Clothianidin) Gradient Triggers Specific Dysbiosis Signatures of Microbiota Activity along the Honeybee (Apis mellifera) Digestive Tract
Microorganisms
2021
RESCRIPt: Reproducible sequence taxonomy reference database management
PLOS Computational Biology
2021
ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences
PeerJ
2021
Comprehensive Foodomics
2021
Lactobacillus acidophilus LA14 Alleviates Liver Injury
mSystems
2021
Persistence of Enterobacteriaceae Drawn into a Marine Saltern (Saline di Tarquinia, Italy) from the Adjacent Coastal Zone
Water
2021
Unraveling the mystery of ‘bask in daytime and dewed at night’ technique in doubanjiang (broad bean paste) fermentation
LWT
2021
Microbial and abiotic factors of flooded soil that affect redox biodegradation of lindane
Science of The Total Environment
2021
The Meta-Organism Response of the Environmental Generalist Pocillopora damicornis Exposed to Differential Accumulation of Heat Stress
Frontiers in Marine Science
2021
Microbiomes of clownfish and their symbiotic host anemone converge before their first physical contact
Microbiome
2021
Methane-associated micro-ecological processes crucially improve the self-purification of lindane-polluted paddy soil
Journal of Hazardous Materials
2021
Manganese oxides in Phragmites rhizosphere accelerates ammonia oxidation in constructed wetlands
Water Research
2021
Topography effect on Aspergillus flavus occurrence and aflatoxin B1 contamination associated with peanut
Current Research in Microbial Sciences
2021
Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems
Scientific Reports
2021
Maternal Microbiota Transfer Programs Offspring Eating Behavior
Frontiers in Microbiology
2021
Nanopore Sequencing Provides Rapid and Reliable Insight Into Microbial Profiles of Intensive Care Units
Frontiers in Public Health
2021
The microbial population structure and function of peanut peanut and their effects on aflatoxin contamination
LWT
2021
Frontiers in Probability and the Statistical Sciences
2021
Different Effects of Thermophilic Microbiological Inoculation With and Without Biochar on Physicochemical Characteristics and Bacterial Communities in Pig Manure Composting
Frontiers in Microbiology
2021
Identifying optimal bioinformatics protocols for aerosol microbial community data
PeerJ
2020
Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA
Phytobiomes Journal
2020
Sandy soils amended with bentonite induced changes in soil microbiota and fungistasis in maize fields
Applied Soil Ecology
2020
Gut Microbiota Modulate CD8 T Cell Responses to Influence Colitis-Associated Tumorigenesis
Cell Reports
2020
Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households
Water Research X
2020
Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes
Frontiers in Microbiology
2020
Challenges in Human Skin Microbial Profiling for Forensic Science: A Review
Genes
2020
phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes
mSystems
2020
Detecting and correcting misclassified sequences in the large-scale public databases
Bioinformatics
2020
Reference Module in Food Science
2020
Influence of Exercise on the Human Gut Microbiota of Healthy Adults: A Systematic Review
Clinical and Translational Gastroenterology
2020
Molecular Characterization of Trichoderma spp. Isolates by Internal Transcribed Spacer (ITS) Region Sequencing Technique and its Use as a Biocontrol Agent
The Open Biotechnology Journal
2020
Biodegradation of textile waste by marine bacterial communities enhanced by light
Environmental Microbiology Reports
2020
Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing
PLOS ONE
2020
An Insight into Diversity and Functionalities of Gut Microbiota in Insects
Current Microbiology
2020
Islands in the sand: are all hypolithic microbial communities the same?
FEMS Microbiology Ecology
2020
Full Issue PDF
Phytobiomes Journal
2020
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets
Microbiome
2019
The Lung Microbiome
2019
Long-Term Temperature Stress in the Coral Model Aiptasia Supports the “Anna Karenina Principle” for Bacterial Microbiomes
Frontiers in Microbiology
2019
ANCHOR: a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples
Environmental Microbiology
2019
The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions
Frontiers in Microbiology
2019
Guidelines for Transparency on Gut Microbiome Studies in Essential and Experimental Hypertension
Hypertension
2019
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products
BMC Genomics
2019
Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
Scientific Reports
2019
DMSC: A Dynamic Multi-Seeds Method for Clustering 16S rRNA Sequences Into OTUs
Frontiers in Microbiology
2019
Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes
Frontiers in Microbiology
2019
The Critical Importance of Rhodoliths in the Life Cycle Completion of Both Macro- and Microalgae, and as Holobionts for the Establishment and Maintenance of Marine Biodiversity
Frontiers in Marine Science
2018
New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract
mSystems
2018
Review: The application of omics to rumen microbiota function
Animal
2018
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification
Genome Biology
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