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2025
High-quality genome assembly of a cosmopolitan insect predator, Chrysoperla zastrowi sillemi (Esben-Petersen)
Scientific Data
2025
A reference genome for Trichogramma kaykai: a tiny desert-dwelling parasitoid wasp with competing sex-ratio distorters
G3: Genes, Genomes, Genetics
2025
Draft genome and transcriptomic sequence data of three invasive insect species
Peer Community Journal
2025
Assembly and analysis of the complete mitochondrial and chloroplast genomes of Vigna reflexo-pilosa
PLOS One
2025
Comparison of Recombination Rate, Reference Bias, and Unique Pangenomic Haplotypes in Cannabis sativa Using Seven De Novo Genome Assemblies
International Journal of Molecular Sciences
2025
Evolutionary Consequences of Unusually Large Pericentric TE-rich Regions in the Genome of a Neotropical Fig Wasp
Genome Biology and Evolution
2025
The Convergent Evolution of Hummingbird Pollination Results in Repeated Floral Scent Loss Through Gene Downregulation
Molecular Biology and Evolution
2025
Genes linked to schistosome resistance identified in a genome-wide association study of African snail vectors
Nature Communications
2025
The Distribution and Dispersal of Large Haploblocks in a Superspecies
Molecular Ecology
2025
A telomere-to-telomere phased genome of an octoploid strawberry reveals a receptor kinase conferring anthracnose resistance
GigaScience
2025
Biparental inheritance of germline-specific chromosomes in the sea lamprey and their roles in oocytes
Proceedings of the National Academy of Sciences
2025
Comparative analysis using a chromosome-scale genome assembly for Funaria hygrometrica suggests greater collinearity in mosses than in seed plants
Communications Biology
2025
A chromosome-scale reference assembly of Vigna radiata enables delineation of centromeres and telomeres
Scientific Data
2025
Toward a Comprehensive Overview of Cytogenomics in the Galliformes: A Focus on Western Capercaillie and Hazel Grouse Karyotypes
Cytogenetic and Genome Research
2025
Investigating the Impact of Whole-Genome Duplication on Transposable Element Evolution in Teleost Fishes
Genome Biology and Evolution
2025
Reference-based chromosome-scale assembly of Japanese barley (Hordeum vulgare ssp. vulgare) cultivar Hayakiso 2
DNA Research
2025
Genome-Wide Mapping of Autonomously Replicating Sequences in the Marine Diatom Phaeodactylum tricornutum
Marine Biotechnology
2025
Characterization of Quantitative Trait Loci for Fusarium Head Blight Resistance and Agronomic Traits in Wheat Cultivar ‘Jagger’ and Its Mutant ‘JagR1097’
Phytopathology®
2025
An annotated chromosome-level genome for the red-fronted brown lemur (Eulemur rufifrons) sheds light on brown lemur evolution
G3: Genes, Genomes, Genetics
2025
Allotetraploid nature of a wild potato species, Solanum stoloniferum Schlechtd. et Bché., as revealed by whole‐genome sequencing
The Plant Journal
2025
Pangenome analysis reveals structural variation associated with seed size and weight traits in peanut
Nature Genetics
2025
Combating enteropathogenic and multidrug resistant Escherichia coli using the lytic bacteriophage vB_EcoM_ECO78, which disrupts bacterial biofilm formation and exhibits a remarkable environmental stability
Journal of Applied Microbiology
2025
Phenological variation associates with the stability of fruit quality traits in cultivated tetraploid blueberry
G3: Genes, Genomes, Genetics
2025
Enhancing local meiotic crossovers in Arabidopsis and maize through juxtaposition of heterozygous and homozygous regions
Nature Plants
2025
Limited population structure but signals of recent selection in introduced African Fig Fly (Zaprionus indianus) in North America
G3: Genes, Genomes, Genetics
2025
Nocardia nepalensis sp. nov., a novel actinobacterium isolated from forest soil in Pokhara, Nepal
The Microbe
2025
Chromosome-level genome assembly of the king horseshoe bat (Rhinolophus rex) provides insights into its conservation status and chromosomal evolution of Rhinolophus
Journal of Heredity
2025
Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping
Genes
2025
Deep R-gene discovery in HLB resistant wild Australian limes uncovers evolutionary features and potentially important loci for hybrid breeding
Frontiers in Plant Science
2025
Chromosomal Inversions Mediated by Tandem Insertions of Transposable Elements
Genome Biology and Evolution
2025
Genome sequencing and analysis of isolates of Cytospora sorbicola and Cytospora plurivora associated with almond and peach canker
PLOS One
2025
Chromosome-level genome assembly of cultivated strawberry ‘Seolhyang’ (Fragaria × ananassa)
Scientific Data
2025
Comprehensive genome analysis of two Cytospora (Cytosporaceae, Diaporthales) species associated with canker disease of spruce: C. piceae and C. piceicola sp. nov.
MycoKeys
2025
Masu salmon species complex relationships and sex chromosomes revealed from analyses of the masu salmon (Oncorhynchus masou masou) genome assembly
G3: Genes, Genomes, Genetics
2025
Chromosome-level genome assembly of the doctor fish (Garra rufa)
Scientific Data
2025
3D Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback
Molecular Ecology
2025
Streptococcus pyogenes emm Type 3.93 Emergence, the Netherlands and England
Emerging Infectious Diseases
2025
Endophytic Agrobacterium sp. from Strawberry Roots Suppresses Host Plant Growth
Phytobiomes Journal
2025
Chromosome-scale genome assembly of the bed bug Cimex lectularius sheds light on a key insecticide resistance locus
G3: Genes, Genomes, Genetics
2025
The genome of the Australian water dragon (Intellagama lesueurii), an agamid model for urban adaptation
Journal of Heredity
2025
Sex Differentiation and Long‐Distance Gene Flow in the Elusive Antarctic Fish Aethotaxis mitopteryx
Ecology and Evolution
2025
Two homoeoallelic gene expression of TaCHLIs ensures normal chlorophyll biosynthesis in Hexaploid wheat
Plant Physiology and Biochemistry
2025
Chromosome-scale genome dynamics reveal signatures of independent haplotype evolution in the ancient asexual mite Platynothrus peltifer
Science Advances
2025
Genome sequencing and identification of candidate variants for a red/black color polymorphism in tilapia (Oreochromis spp.)
Aquaculture
2025
The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication
BMC Genomics
2025
The complex evolution and genomic dynamics of mating-type loci in Cryptococcus and Kwoniella
PLOS Biology
2025
Light-controlled Spo11-less meiotic DNA breaks by MagTAQing lead to chromosomal aberrations
Nucleic Acids Research
2025
Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly
Genome Research
2025
Deepsea fungi of the eastern tropical Pacific of Costa Rica: morphological, genetic, and enzymatic characterization
Frontiers in Marine Science
2025
Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns
Molecular Biology and Evolution
2025
Jan and mini‐Jan, a model system for potato functional genomics
Plant Biotechnology Journal
2025
Optimization of crossing strategy based on the usefulness criterion in interpopulation crosses considering different marker effects among populations
Theoretical and Applied Genetics
2025
Interplay between large low-recombining regions and pseudo-overdominance in a plant genome
Nature Communications
2025
The genome of the MZM-0403 strain of the African turquoise killifish, Nothobranchius furzeri
G3: Genes, Genomes, Genetics
2025
The genome assembly of the duckweed fern, Azolla caroliniana
Journal of Heredity
2025
A well‐annotated genome of Apium graveolens var. dulce cv. Challenger, a celery with resistance to Fusarium oxysporum f. sp. apii race 2
The Plant Journal
2025
Two chromosomal reference genome sequences for the malaria mosquito, Anopheles (Nyssorhynchus) darlingi, Root, 1926 from French Guiana and Peru
Wellcome Open Research
2025
Genomic diversity of the African malaria vector Anopheles funestus
Science
2025
Novel genomic features in entomopathogenic fungus Beauveria bassiana ILB308: accessory genomic regions and putative virulence genes involved in the infection process of soybean pest Piezodorus guildinii
Pest Management Science
2025
De novo genome hybrid assembly and annotation of the endangered and euryhaline fish Aphanius iberus (Valenciennes, 1846) with identification of genes potentially involved in salinity adaptation
BMC Genomics
2025
MeStanG—Resource for High-Throughput Sequencing Standard Data Sets Generation for Bioinformatic Methods Evaluation and Validation
Biology
2025
Decoding Phytophthora meadii (McRae): the first genomic insights into the arecanut fruit rot pathogen
Journal of Plant Pathology
2025
Chromosome-level phased genome assembly of the argan tree Sideroxylon spinosum
Scientific Data
2025
Re-evaluation of the nodulation capacity of Sphingomonas sediminicola DSM 18106T indicates that this strain is not capable of inducing root nodule formation on Pisum sativum (pea)
Canadian Journal of Microbiology
2025
A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa
Scientific Data
2025
Evolution of sympatric host‐specialized lineages of the fungal plant pathogen Zymoseptoria passerinii in natural ecosystems
New Phytologist
2025
Chromosome-specific centromeric patterns define the centeny map of the human genome
Science
2025
Genetic basis for broad interspecific compatibility in Solanum verrucosum
The Plant Journal
2025
ves1α genes expression is the major determinant of Babesia bovis-infected erythrocytes cytoadhesion to endothelial cells
PLOS Pathogens
2025
The Complete Chloroplast Genome of Tree Fern Cyathea delgadii and Its Comparison to Other Cyatheales
Biochemical Genetics
2025
Importance, structure, cultivability, and resilience of the bacterial microbiota during infection of laboratory-grown Haematococcus spp. by the blastocladialean pathogen Paraphysoderma sedebokerense: evidence for a domesticated microbiota and its potential for biocontrol
FEMS Microbiology Ecology
2025
Nanopore Sequencing of Amoebophrya Species Reveals Novel Collection of Bacteria Putatively Associated With Karlodinium veneficum
Genome Biology and Evolution
2025
Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius
Scientific Data
2025
Rapid whole genome sequencing for AMR surveillance in low- and middle-income countries: Oxford Nanopore Technology reveals multidrug-resistant Enterobacter cloacae complex from dairy farms in Sri Lanka
BMC Veterinary Research
2025
Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America
Journal of Heredity
2025
Genetics, genomics and breeding of fennel
BMC Plant Biology
2025
Small pangenome of Candida parapsilosis reflects overall low intraspecific diversity
mBio
2025
Uncovering the Fungus Responsible for Stem and Root Rot of False Indigo: Pathogen Identification, New Disease Description, and Genome Analyses
Plant Disease
2025
Whole-genome assembly of Aspergillus toxicus and Aspergillus texensis
Microbiology Resource Announcements
2025
Nearly telomere-to-telomere genome assembly of the L. edodes diploid genome
Fungal Genetics and Biology
2025
Coevolution of marine phytoplankton and Alteromonas bacteria in response to pCO2 and coculture
The ISME Journal
2025
Characterizing the structural variations in the genome of the mandarin variety, IrM2, induced by gamma irradiation
Plant Biotechnology Journal
2025
Comparative Genomics Reveals Ancient and Unique Pathogenicity Features in Australian Fusarium oxysporum f. sp. vasinfectum
Journal of Fungi
2025
Chromosome-level assembly of <i>Cucumis sativus</i> cv. ‘Tokiwa’ as a reference genome of Japanese cucumber
Breeding Science
2025
A 69.9-kb long inverted repeat increases genome instability in a strain of Lactobacillus crispatus
NAR Genomics and Bioinformatics
2025
Geometric deep learning framework for de novo genome assembly
Genome Research
2025
QTL detection and genomic prediction for resistance to anthracnose in alfalfa (Medicago sativa)
The Plant Genome
2025
Pan-centromere landscape and dynamic evolution in Brassica plants
Nature Plants
2025
A Chromosome Inversion Creates a Supergene for Sex and Colour in Lake Malawi Cichlids
Molecular Ecology
2025
Genome structure and molecular phylogeny of the only Eurasian Boechera species, Boechera falcata (Brassicaceae)
G3: Genes, Genomes, Genetics
2025
First chromosome-level genome assembly of the colonial chordate model Botryllus schlosseri (Tunicata)
GigaScience
2025
A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN
Molecular Plant-Microbe Interactions®
2025
Genome assembly and comparative analysis of Alternaria linariae reveal novel genes associated with host colonization and virulence
BMC Genomics
2025
Nearly T2T, phased genome assemblies of corals reveal haplotype diversity and the evolutionary process of gene expansion
DNA Research
2025
Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes
Genetics Selection Evolution
2025
SMC-like Wadjet system prevents plasmid transfer into Clostridium cellulovorans
Applied Microbiology and Biotechnology
2025
Chromosome‐level assemblies of Amaranthus palmeri, Amaranthus retroflexus, and Amaranthus hybridus allow for genomic comparisons and identification of a sex‐determining region
The Plant Journal
2025
Genomic insights and comparative analysis of Colletotrichum species associated with anthracnose fruit rot and crown rot of strawberry in North Carolina
Frontiers in Microbiology
2025
Dotplotic: a lightweight visualization tool for BLAST + alignments and genomic annotations
BMC Bioinformatics
2025
Developmental differentiation of mouse inner ear neuron subpopulations resolved with a peripherin-promoter reporter within the Grm8 locus
Scientific Reports
2025
The genome assembly of the westslope cutthroat trout, Oncorhynchus lewisi, reveals interspecific chromosomal rearrangements with the rainbow trout, Oncorhynchus mykiss
G3: Genes, Genomes, Genetics
2025
Exploring intra‐ and intergenomic variation in haplotype‐resolved pangenomes
Plant Biotechnology Journal
2025
Genetic purging in an island-endemic pigeon recovering from the brink of extinction
Communications Biology
2025
Chromosome‐Scale Genome Assembly Provides Insights Into Condor Evolution and Conservation
Molecular Ecology Resources
2025
A divergent haplotype with a large deletion at the berry color locus causes a white-skinned phenotype in grapevine
Horticulture Research
2025
Genomes of Two Monophagous Weevils and Their Host Plant Provide Insights Into Evolution of Plant Defence and Insect Counter‐Defence
Molecular Ecology Resources
2025
Identification of a novel genetic locus conferring virulence in the wheat tan spot pathogen Pyrenophora tritici-repentis
Fungal Genetics and Biology
2025
Evaluating long-read assemblers to assemble several aphididae genomes
Briefings in Bioinformatics
2025
Telomere‐to‐telomere genome assembly of linseed (Linum usitatissimum L.) for functional genomics and accelerated genetic improvement
Plant Biotechnology Journal
2025
How Did Evolution Halve Genome Size During an Oceanic Island Colonization?
Molecular Biology and Evolution
2025
High-quality, haplotype-resolved reference genomes of the Dutch warmblood horse and Friesian horse using trio binning
BMC Genomics
2025
Contributions of interspecific hybrids to genetic variability in Glycyrrhiza uralensis and G. glabra
Scientific Reports
2025
New tsetse (Glossina fuscipes fuscipes) genomes generated from wild and laboratory‐reared specimens
Insect Science
2025
A Chromosome level assembly of pomegranate (Punica granatum L.) variety grown in arid environment
Scientific Data
2025
Chromosome-level genome assembly and methylome profile yield insights for the conservation of endangered loggerhead sea turtles
GigaScience
2025
Genome Evolution of Two Intertidal Sargassum Species (S. fusiforme and S. thunbergii) and Their Response to Abiotic Stressors
Genome Biology and Evolution
2025
The expanded Bostrychia moritziana genome unveils evolution in the most diverse and complex order of red algae
Current Biology
2025
Blastn2dotplots: multiple dot-plot visualizer for genome comparisons
BMC Bioinformatics
2025
Closed genome sequence of Fretibacterium fastidiosum , a potential contributor to periodontal disease
Microbiology Resource Announcements
2025
Characterization of the family-level Borreliaceae pan-genome and development of an episomal typing protocol
mBio
2025
The Oryza australiensis genome reveals potential as a source of genes for rice improvement
Scientific Reports
2025
Nuclear and organelle genome assemblies of 5 Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais, and Zhimali, belonging to diverse botanical groups
G3: Genes, Genomes, Genetics
2025
Long-read metagenomic sequencing negates inferred loss of cytosine methylation in Myxosporea (Cnidaria: Myxozoa)
GigaScience
2025
Activation of three targets by a TAL effector confers susceptibility to bacterial blight of cotton
Nature Communications
2025
A near chromosome-level assembly of the serpentine endemic columbine, Aquilegia eximia
Journal of Heredity
2025
A chromosomal reference genome sequence for the malaria mosquito, Anopheles (Nyssorhynchus) aquasalis, Curry, 1932
Wellcome Open Research
2024
In silico prediction of polyketide biosynthetic gene clusters in the genomes of Hypericum-borne endophytic fungi
BMC Genomics
2024
A comparison of genomic diversity and demographic history of the North Atlantic and Southwest Atlantic southern right whales
Molecular Ecology
2024
Discovery of the Pendulisporaceae: An extremotolerant myxobacterial family with distinct sporulation behavior and prolific specialized metabolism
Chem
2024
AssemblyQC: a Nextflow pipeline for reproducible reporting of assembly quality
Bioinformatics
2024
Improved metagenome assemblies through selective enrichment of bacterial genomic DNA from eukaryotic host genomic DNA using ATAC-seq
Frontiers in Microbiology
2024
A chromosomal reference genome sequence for the malaria mosquito, Anopheles nili, Theobald, 1904
Wellcome Open Research
2024
A chromosome‐level genome of mango exclusively from long‐read sequence data
The Plant Genome
2024
The Hypolimnas misippus Genome Supports a Common Origin of the W Chromosome in Lepidoptera
Genome Biology and Evolution
2024
Cis-regulatory evolution of the recently expanded Ly49 gene family
Nature Communications
2024
Transcriptomic and metabolomic reveal OsCOI2 as the jasmonate-receptor master switch in rice root
PLOS ONE
2024
A cluster of putative resistance genes is associated with a dominant resistance to sunflower broomrape
Theoretical and Applied Genetics
2024
The rapidly evolving X-linked MIR-506 family fine-tunes spermatogenesis to enhance sperm competition
eLife
2024
Chromosomal reference genome sequences for the malaria mosquito, Anopheles coustani, Laveran, 1900
Wellcome Open Research
2024
Mapping of a major locus involved in shoot growth habit in hexaploid sweetpotato using bulked-segregant analysis
Euphytica
2024
The Near-Gapless Penicillium fuscoglaucum Genome Enables the Discovery of Lifestyle Features as an Emerging Post-Harvest Phytopathogen
Journal of Fungi
2024
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae
Genome Biology and Evolution
2024
Genome-Enabled Analysis of Population Dynamics and Virulence-Associated Loci in the Oat Crown Rust Fungus Puccinia coronata f. sp. avenae
Molecular Plant-Microbe Interactions®
2024
The haplotype-phased genome assembly facilitated the deciphering of the bud dormancy-related QTLs in Prunus mume
DNA Research
2024
Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora
BMC Genomics
2024
Genomic landscapes of divergence among island bird populations: Evidence of parallel adaptation but at different loci?
Molecular Ecology
2024
Chromosome-Scale Genome Sequence Resource for Two Neopestalotiopsis spp. Isolates with Different Virulence in Strawberry (Fragaria × ananassa)
PhytoFrontiers™
2024
Complete genome sequence of Kitasatospora aureofaciens Tü117
Microbiology Resource Announcements
2024
Genomic analyses of the southern and eastern yellowjacket wasps (Hymenoptera: Vespidae) reveal evolutionary signatures of social life
Annals of the Entomological Society of America
2024
Divergence and gene flow history at two large chromosomal inversions underlying ecotype differentiation in the long‐snouted seahorse
Molecular Ecology
2024
Reinstatement of the fission yeast species Schizosaccharomyces versatilis Wickerham et Duprat, a sibling species of Schizosaccharomyces japonicus
Yeast
2024
Maternal inheritance of functional centrioles in two parthenogenetic nematodes
Nature Communications
2024
Genome assemblies for Chromidotilapia guntheri (Teleostei: Cichlidae) identify a novel candidate gene for vertebrate sex determination, RIN3
Frontiers in Genetics
2024
Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis
Communications Biology
2024
A nuclear genome assembly of an extinct flightless bird, the little bush moa
Science Advances
2024
Genome assemblies of two species of porcelain crab, Petrolisthes cinctipes and Petrolisthes manimaculis (Anomura: Porcellanidae)
G3: Genes, Genomes, Genetics
2024
Increased Evolutionary Rate in the Z chromosome of Sympatric and Allopatric Species of Morpho Butterflies
Genome Biology and Evolution
2024
Genome-wide survey of the bipartite structure and pathogenesis-related genes of Neostagonosporella sichuanensis, a causal agent of Fishscale bamboo rhombic-spot disease
Frontiers in Microbiology
2024
A reference genome for the Harpy Eagle reveals steady demographic decline and chromosomal rearrangements in the origin of Accipitriformes
Scientific Reports
2024
The rapidly evolving X-linked MIR-506 family fine-tunes spermatogenesis to enhance sperm competition
eLife
2024
Isolation of Saccharomycopsis species from plant material
Microbiological Research
2024
Telomere-to-telomere genome assembly of the aflatoxin biocontrol agent Aspergillus flavus isolate La3279 isolated from maize in Nigeria
Microbiology Resource Announcements
2024
Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding
PLOS Genetics
2024
Quantum algorithm for bioinformatics to compute the similarity between proteins
IET Quantum Communication
2024
A haplotype-resolved reference genome of a long-distance migratory bat, Pipistrellus nathusii (Keyserling & Blasius, 1839)
DNA Research
2024
A chromosome-level genome assembly of the Asian house martin implies potential genes associated with the feathered-foot trait
G3: Genes, Genomes, Genetics
2024
A chromosomal reference genome sequence for the malaria mosquito, Anopheles maculipalpis, Giles, 1902
Wellcome Open Research
2024
A high-resolution haplotype collection uncovers somatic hybridization, recombination and intercontinental movement in oat crown rust
PLOS Genetics
2024
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies
Molecular Biology and Evolution
2024
FoPGDB: a pangenome database of Fusarium oxysporum, a cross-kingdom fungal pathogen
Database
2024
The origin and maintenance of supergenes contributing to ecological adaptation in Atlantic herring
Nature Communications
2024
The extent and characteristics of DNA transfer between plasmids and chromosomes
Current Biology
2024
A phosphatase gene is linked to nectar dihydroxyacetone accumulation in mānuka (Leptospermum scoparium)
New Phytologist
2024
Chromosome-level genome assembly of the red mutant of Chinese chestnut (Castanea mollissima) provides new insights into anthocyanin accumulation
Scientia Horticulturae
2024
Assembly and annotation of 2 high-quality columbid reference genomes from sequencing of a Columba livia × Columba guinea F1 hybrid
G3: Genes, Genomes, Genetics
2024
Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated
Frontiers in Plant Science
2024
Genomic and transcriptomic analyses of Phytophthora cinnamomi reveal complex genome architecture, expansion of pathogenicity factors, and host-dependent gene expression profiles
Frontiers in Microbiology
2024
In‐depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis
The Plant Journal
2024
In vitro and in vivo assessment of the competence of a novel lytic phage vB_EcoS_UTEC10 targeting multidrug resistant Escherichia coli with a robust biofilm eradication activity
Microbial Pathogenesis
2024
The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments
PLOS Biology
2024
The first high-quality genome assembly and annotation of Lantana camara, an important ornamental plant and a major invasive species
Horticulture Advances
2024
The Updated Genome of the Burying Beetle Nicrophorus vespilloides, a Model Species for Evolutionary and Genetic Studies of Parental Care
Ecology and Evolution
2024
Chromosomal-Level Genome Assembly of the Antarctic Sea Urchin Sterechinus neumayeri: A Model for Antarctic Invertebrate Biology
Genome Biology and Evolution
2024
The genome of Citrus australasica reveals disease resistance and other species specific genes
BMC Plant Biology
2024
Chromosome-scale genome assembly of acerola (Malpighia emarginata DC.)
DNA Research
2024
The genome organization of the Lake Magadi tilapia, Oreochromis Alcolapia grahami, a cichlid extremophile
Journal of Great Lakes Research
2024
Worse than nothing at all: the inequality of fusions joining autosomes to the PAR and non-PAR portions of sex chromosomes
PeerJ
2024
A Chromosome-Level Genome Assembly and Annotation for the Clouded Apollo Butterfly (Parnassius mnemosyne): A Species of Global Conservation Concern
Genome Biology and Evolution
2024
DNA methylation enables recurrent endogenization of giant viruses in an animal relative
Science Advances
2024
Multiplexed CRISPR-Cas9 mutagenesis of rice PSBS1 noncoding sequences for transgene-free overexpression
Science Advances
2024
Near-complete telomere-to-telomere de novo genome assembly in Egyptian clover (Trifolium alexandrinum)
DNA Research
2024
Detailed cytogenetic analysis of three duck species (the northern pintail, mallard, and common goldeneye) and karyotype evolution in the family Anatidae (Anseriformes, Aves)
Vavilov Journal of Genetics and Breeding
2024
Near-chromosomal-level genome of the red palm weevil (Rhynchophorus ferrugineus), a potential resource for genome-based pest control
Scientific Data
2024
Complete de novo assembly of Wolbachia endosymbiont of Drosophila willistoni using long-read genome sequencing
Scientific Reports
2024
The chromosome-scale reference genome for the pinfish (Lagodon rhomboides) provides insights into their evolutionary and demographic history
G3: Genes, Genomes, Genetics
2024
A gap-free genome assembly of Fusarium oxysporum f. sp. conglutinans, a vascular wilt pathogen
Scientific Data
2024
Chromosome-level genome assembly of the diploid oat species Avena longiglumis
Scientific Data
2024
In Silico Safety Assessment of Bacillus Isolated from Polish Bee Pollen and Bee Bread as Novel Probiotic Candidates
International Journal of Molecular Sciences
2024
A de novo genome assembly of Solanum bulbocastanum Dun., a Mexican diploid species reproductively isolated from the A-genome species, including cultivated potatoes
G3: Genes, Genomes, Genetics
2024
Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis
Nature Communications
2024
Comparative Genome Analysis of Japanese Field-Isolated Aspergillus for Aflatoxin Productivity and Non-Productivity
Journal of Fungi
2024
Haematococcus lacustris genome assembly and annotation reveal diploid genetic traits and stress-induced gene expression patterns
Algal Research
2024
The Madagascar palm genome provides new insights on the evolution of Apocynaceae specialized metabolism
Heliyon
2024
A Telomere-to-Telomere Genome Assembly Resource of Bipolaris sorokiniana, the Fungal Pathogen Causing Spot Blotch and Common Root Rot Diseases in Barley and Wheat
PhytoFrontiers™
2024
Chromosome scale genome assembly and annotation of coconut cultivar Chowghat Green Dwarf
Scientific Reports
2024
Chromosome‐level genome assembly and comparative genomics shed light on Helicoverpa assulta ecology and pest management
Pest Management Science
2024
Comparative genomic analysis of Bacillus atrophaeus HAB-5 reveals genes associated with antimicrobial and plant growth-promoting activities
Frontiers in Microbiology
2024
Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis
Genome Biology and Evolution
2024
Genomes of Microtus Rodents Highlight the Importance of Olfactory and Immune Systems in Their Fast Radiation
Genome Biology and Evolution
2024
Near-complete genome assembly of tomato (<i>Solanum lycopersicum</i>) cultivar Micro-Tom
Plant Biotechnology
2024
Chromosome-level Haploid Assembly of Cannabis sativa L. cv. Pink Pepper
Scientific Data
2024
Low-input PacBio sequencing generates high-quality individual fly genomes and characterizes mutational processes
Nature Communications
2024
Susceptibility of BS90 Biomphalaria glabrata snails to infection by SmLE Schistosoma mansoni segregates as a dominant allele in a cluster of polymorphic genes for single-pass transmembrane proteins
PLOS Neglected Tropical Diseases
2024
A chromosomal reference genome sequence for the malaria mosquito, Anopheles marshallii, Theobald, 1903
Wellcome Open Research
2023
Recurrent neo-sex chromosome evolution in kiwifruit
Nature Plants
2023
Nuclear exchange generates population diversity in the wheat leaf rust pathogen Puccinia triticina
Nature Microbiology
2023
Hybridization of Atlantic puffins in the Arctic coincides with 20th-century climate change
Science Advances
2023
Ancient gene linkages support ctenophores as sister to other animals
Nature
2023
Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data
PLOS ONE
2023
Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
DNA Research
2023
In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment
G3: Genes, Genomes, Genetics
2023
Chromosome‐level genomes of two armyworms, Mythimna separata and Mythimna loreyi, provide insights into the biosynthesis and reception of sex pheromones
Molecular Ecology Resources
2023
The Genome of the Korean Island-Originated Perilla citriodora ‘Jeju17’ Sheds Light on Its Environmental Adaptation and Fatty Acid and Lipid Production Pathways
Genes
2023
Arbuscular mycorrhizal fungi heterokaryons have two nuclear populations with distinct roles in host–plant interactions
Nature Microbiology
2023
A comparison of Oxford nanopore library strategies for bacterial genomics
BMC Genomics
2023
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
Frontiers in Plant Science
2023
Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma
G3
2023
Chromosome-level reference genomes of two imperiled desert fishes: spikedace (Meda fulgida) and loach minnow (Tiaroga cobitis)
G3: Genes, Genomes, Genetics
2023
A chromosomal reference genome sequence for the malaria mosquito, Anopheles moucheti, Evans, 1925
Wellcome Open Research
2023
A high-quality genome for the slender anole (Anolis apletophallus): an emerging model for field studies of tropical ecology and evolution
G3: Genes, Genomes, Genetics
2023
High-Quality Nuclear Genome and Mitogenome of Bipolaris sorokiniana LK93, a Devastating Pathogen Causing Wheat Root Rot
Molecular Plant-Microbe Interactions®
2023
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes
Cell Reports
2023
Rice Pangenome Genotyping Array: an efficient genotyping solution for pangenome‐based accelerated genetic improvement in rice
The Plant Journal
2023
A high-quality reference genome of the kelp surfperch, Brachyistius frenatus (Embiotocidae), a wide-ranging Eastern Pacific reef fish with no pelagic larval stage
Journal of Heredity
2023
The Rauvolfia tetraphylla genome suggests multiple distinct biosynthetic routes for yohimbane monoterpene indole alkaloids
Communications Biology
2023
<i>De novo</i> genome assembly of the partial homozygous dihaploid potato identified PVY resistance gene (<i>Ry<sub>chc</sub></i>) derived from <i>Solanum chacoense</i>
Breeding Science
2023
The gyrfalcon (Falco rusticolus) genome
G3: Genes, Genomes, Genetics
2023
A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance
Horticulture Research
2023
Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum ‘Takanotsume’
DNA Research
2023
The chromosomal evolutionary lineage of the genus Zygosaccharomyces
FEMS Yeast Research
2023
Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization
Genome Research
2023
A panoramic view of the genomic landscape of the genus Streptomyces
Microbial Genomics
2023
High quality de novo genome assembly of the non-conventional yeast Kazachstania bulderi describes a potential low pH production host for biorefineries
Communications Biology
2023
A chromosome-level reference genome and pangenome for barn swallow population genomics
Cell Reports
2023
Genomic Sequence of Canadian Chenopodium berlandieri: A North American Wild Relative of Quinoa
Plants
2023
Genome Report: Genome sequence of 1S1, a transformable and highly regenerable diploid potato for use as a model for gene editing and genetic engineering
G3: Genes, Genomes, Genetics
2023
Near‐gapless genome assemblies of Williams 82 and Lee cultivars for accelerating global soybean research
The Plant Genome
2023
In Silico Chromosome Mapping of the Male-Specific/Linked Loci in the Jade Perch (Scortum barcoo) Suggests Chromosome 19 as the Putative Y Sex Chromosome
Fishes
2023
Highly accurate genome assembly of an improved high-yielding silkworm strain, Nichi01
G3: Genes, Genomes, Genetics
2023
Whole genome assemblies of Zophobas morio and Tenebrio molitor
G3: Genes, Genomes, Genetics
2023
The genome of Lignosus tigris: Uncovering its hidden nutraceutical potential
South African Journal of Botany
2023
Genomic divergence and introgression between cryptic species of a widespread North American songbird
Molecular Ecology
2023
An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping
G3: Genes, Genomes, Genetics
2023
Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola
Frontiers in Plant Science
2023
Chromosome-level genome assembly of Hydractinia symbiolongicarpus
G3: Genes, Genomes, Genetics
2023
Sablefish (Anoplopoma fimbria) chromosome-level genome assembly
G3: Genes, Genomes, Genetics
2023
NGS-based genome wide association study helps to develop co-dominant marker for the physical map-based locus of PFRU controlling flowering in cultivated octoploid strawberry
Euphytica
2023
A near complete genome assembly of chia assists in identification of key fatty acid desaturases in developing seeds
Frontiers in Plant Science
2023
Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing
Frontiers in Microbiology
2023
Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture
Proceedings of the National Academy of Sciences
2023
Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements inChlamydomonas reinhardtii
Genome Research
2023
Two haplotype-resolved genomes reveal important flower traits in bigleaf hydrangea (Hydrangea macrophylla) and insights into Asterid evolution
Horticulture Research
2023
Genome Assembly of a Relict Arabian Species of Daphnia O. F. Müller (Crustacea: Cladocera) Adapted to the Desert Life
International Journal of Molecular Sciences
2023
Genotypic diversity and unrecognized antifungal resistance among populations of Candida glabrata from positive blood cultures
Nature Communications
2023
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon
DNA Research
2023
Whole-genome sequences of Bipolaris bicolor , Curvularia hawaiiensis , Curvularia spicifera , and Exserohilum rostratum isolated from rice in Burkina Faso, France, Mali, and Pakistan
Microbiology Resource Announcements
2023
Chromosome-level reference genome for North American bison (Bison bison) and variant database aids in identifying albino mutation
G3: Genes, Genomes, Genetics
2023
Multi-omic analyses reveal the unique properties of chia (Salvia hispanica) seed metabolism
Communications Biology
2023
G-SAIP: Graphical Sequence Alignment Through Parallel Programming in the Post-Genomic Era
Evolutionary Bioinformatics
2023
Cytospora paraplurivora sp. nov. isolated from orchards with fruit tree decline syndrome in Ontario, Canada
PLOS ONE
2023
Complete genome of the toxic mold Aspergillus pseudotamarii isolate NRRL 25517 reveals genomic instability of the aflatoxin biosynthesis cluster
G3: Genes, Genomes, Genetics
2023
Runs of homozygosity reveal past bottlenecks and contemporary inbreeding across diverging populations of an island‐colonizing bird
Molecular Ecology
2023
An annotated chromosome-scale reference genome for Eastern black-eared wheatear (Oenanthe melanoleuca)
G3: Genes, Genomes, Genetics
2023
Chromosome-Level Assemblies of the Pieris mannii Butterfly Genome Suggest Z-Origin and Rapid Evolution of the W Chromosome
Genome Biology and Evolution
2023
Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae
Frontiers in Microbiology
2023
Putting hornets on the genomic map
Scientific Reports
2023
Comprehensive characterization of a transgene insertion in a highly repetitive, centromeric region of Anopheles mosquitoes
Pathogens and Global Health
2023
Metagenomics of culture isolates and insect tissue illuminate the evolution of Wolbachia, Rickettsia and Bartonella symbionts in Ctenocephalides spp. fleas
Microbial Genomics
2023
Robertsonian fusion triggers recombination suppression on sex chromosomes in Coleonyx geckos
Scientific Reports
2023
Whole genome sequencing and analysis of multiple isolates of Ceratocystis destructans, the causal agent of Ceratocystis canker of almond in California
Scientific Reports
2023
Chromosome-level genome assembly of the European flat oyster (Ostrea edulis) provides insights into its evolution and adaptation
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics
2023
Evolution of the Growth Hormone Gene Duplication in Passerine Birds
Genome Biology and Evolution
2023
Improved Genome Assembly Resource of the Plant Pathogen Fusarium avenaceum
PhytoFrontiers™
2023
The draft genome sequence of the Japanese rhinoceros beetle Trypoxylus dichotomus septentrionalis towards an understanding of horn formation
Scientific Reports
2023
Molecular parallelism in the evolution of a master sex‐determining role for the anti‐Mullerian hormone receptor 2 gene (amhr2) in Midas cichlids
Molecular Ecology
2023
A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797)
G3: Genes, Genomes, Genetics
2023
Chromosome-level genome of the three-spot damselfish, Dascyllus trimaculatus
G3: Genes, Genomes, Genetics
2023
Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes
Horticulture Research
2023
High‐quality genomes reveal significant genetic divergence and cryptic speciation in the model organism Folsomia candida (collembola)
Molecular Ecology Resources
2023
The evolution of white-tailed jackrabbit camouflage in response to past and future seasonal climates
Science
2023
Three amphioxus reference genomes reveal gene and chromosome evolution of chordates
Proceedings of the National Academy of Sciences
2023
A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling
Scientific Data
2023
Range-wide differential adaptation and genomic offset in critically endangered Asian rosewoods
Proceedings of the National Academy of Sciences
2023
Development and Genome-Wide Analysis of a Blast-Resistant japonica Rice Variety
Plants
2023
Extensive Copy Number Variation Explains Genome Size Variation in the Unicellular Zygnematophycean Alga, Closterium peracerosum–strigosum–littorale Complex
Genome Biology and Evolution
2023
A Reference Genome Assembly for the Spotted Flycatcher (Muscicapa striata)
Genome Biology and Evolution
2023
Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors
Nature Genetics
2023
Evolution of the spinach sex-linked region within a rarely recombining pericentromeric region
Plant Physiology
2023
Ongoing Rapid Evolution of a Post-Y Region Revealed by Chromosome-Scale Genome Assembly of a Hexaploid Monoecious Persimmon (Diospyros kaki)
Molecular Biology and Evolution
2023
Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration
Cell Genomics
2023
Telomere-to-Telomere genome assemblies of human-infecting Encephalitozoon species
BMC Genomics
2023
Genome assemblies and comparison of two Neotropical spiral gingers: Costus pulverulentus and C. lasius
Journal of Heredity
2023
Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes
BMC Genomics
2023
Hybridisation has shaped a recent radiation of grass-feeding aphids
BMC Biology
2023
Genome assembly, structural variants, and genetic differentiation between lake whitefish young species pairs (Coregonus sp.) with long and short reads
Molecular Ecology
2023
Natural variations of wheat EARLY FLOWERING 3 highlight their contributions to local adaptation through fine-tuning of heading time
Theoretical and Applied Genetics
2023
Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector
PLOS Biology
2023
Genomics of the “tumorigenes” clade of the family Rhizobiaceae and description of Rhizobium rhododendri sp. nov.
MicrobiologyOpen
2023
Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche
G3: Genes, Genomes, Genetics
2023
Gapless Genome Assembly of Puccinia triticina Provides Insights into Chromosome Evolution in Pucciniales
Microbiology Spectrum
2023
Comparative studies of X chromosomes in Cervidae family
Scientific Reports
2023
Pan genome of strawberry cultivars in Japan
Acta Horticulturae
2022
Histological characterization of anther structure in Tetep-cytoplasmic male sterility and fine mapping of restorer-of-fertility gene in rice
PLOS ONE
2022
Analysis of the Taxonomy, Synteny, and Virulence Factors for Soft Rot Pathogen Pectobacterium aroidearum in Amorphophallus konjac Using Comparative Genomics
Frontiers in Microbiology
2022
Genome-wide characterization of twoAubrietataxa:Aubrieta canescenssubsp.canescensandAu. macrostyla(Brassicaceae)
AoB PLANTS
2022
Generation of a chromosome‐level genome assembly for Pacific halibut (Hippoglossus stenolepis) and characterization of its sex‐determining genomic region
Molecular Ecology Resources
2022
A chromosome-level, fully phased genome assembly of the oat crown rust fungus Puccinia coronata f. sp. avenae: a resource to enable comparative genomics in the cereal rusts
G3 Genes|Genomes|Genetics
2022
Possible involvement of extracellular polymeric substrates of Antarctic cyanobacterium Nostoc sp. strain SO-36 in adaptation to harsh environments
Journal of Plant Research
2022
Comparative gene expression and genomics reflect geographical divergence in the plant symbiotic and entomopathogenic fungal genus Metarhizium
Fungal Ecology
2022
Draft genome sequence of Indian mulberry (Morus indica) provides a resource for functional and translational genomics
Genomics
2022
Building a foundation for gene family analysis in Rosaceae genomes with a novel workflow: A case study in Pyrus architecture genes
Frontiers in Plant Science
2022
Genome analysis in Avena sativa reveals hidden breeding barriers and opportunities for oat improvement
Communications Biology
2022
A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
GigaScience
2022
COVID-19 Genome Sequence Analysis for New Variant Prediction and Generation
Mathematics
2022
The genomic basis of host and vector specificity in non-pathogenic trypanosomatids
Biology Open
2022
Bioinformatics for Everyone
2022
Chromosome-scale assembly and annotation of the perennial ryegrass genome
BMC Genomics
2022
Visualizing and Quantifying Longitudinal Changes in Verbal Fluency Using Recurrence Plots
Frontiers in Aging Neuroscience
2022
Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawater
ISME Communications
2022
New Saccharomyces cerevisiae-Kluyveromyces marxianus fusant shows enhanced alcoholic fermentation performance
World Journal of Microbiology and Biotechnology
2022
A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding
The Plant Journal
2022
Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map
GigaScience
2022
Comparative Genome Analyses of Plant Rust Pathogen Genomes Reveal a Confluence of Pathogenicity Factors to Quell Host Plant Defense Responses
Plants
2022
Genomic and Molecular Characterization of Wheat Streak Mosaic Virus Resistance Locus 2 (Wsm2) in Common Wheat (Triticum aestivum L.)
Frontiers in Plant Science
2022
Gap-Free Nuclear and Mitochondrial Genomes of Ustilaginoidea virens JS60-2, a Fungal Pathogen Causing Rice False Smut
Molecular Plant-Microbe Interactions®
2022
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement
Journal of Advanced Research
2022
Isolation and Molecular Characterization of Two Novel Lytic Bacteriophages for the Biocontrol of Escherichia coli in Uterine Infections: In Vitro and Ex Vivo Preliminary Studies in Veterinary Medicine
Pharmaceutics
2022
A regulatory hydrogenase gene cluster observed in the thioautotrophic symbiont of Bathymodiolus mussel in the East Pacific Rise
Scientific Reports
2022
De novo chromosome level assembly of a plant genome from long read sequence data
The Plant Journal
2022
Genome assembly of 3 Amazonian Morpho butterfly species reveals Z-chromosome rearrangements between closely related species living in sympatry
GigaScience
2022
Comparative Genomic Analysis of the Marine Cyanobacterium Acaryochloris marina MBIC10699 Reveals the Impact of Phycobiliprotein Reacquisition and the Diversity of Acaryochloris Plasmids
Microorganisms
2022
Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids
GigaScience
2022
Chromosome-Scale Genome Assembly of the Marine Oleaginous Diatom Fistulifera solaris
Marine Biotechnology
2022
High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads
Genomics, Proteomics & Bioinformatics
2022
Isolation of <i>Pikps</i>, an allele of <i>Pik</i>, from the <i>aus</i> rice cultivar Shoni
Genes & Genetic Systems
2022
High-Resolution Mapping of Barley mild mosaic virus Resistance Gene rym15
Frontiers in Plant Science
2022
A de novo genome assembly of Solanum verrucosum Schlechtendal, a Mexican diploid species geographically isolated from other diploid A-genome species of potato relatives
G3 Genes|Genomes|Genetics
2022
Genomic Characteristics and Comparative Genomics Analysis of Parafenestella ontariensis sp. nov.
Journal of Fungi
2022
A Chromosome-Length Assembly of the Hawaiian Monk Seal (Neomonachus schauinslandi): A History of “Genetic Purging” and Genomic Stability
Genes
2022
Chromosome-level assembly of the Phytophthora agathidicida genome reveals adaptation in effector gene families
Frontiers in Microbiology
2022
Large-scale fungal strain sequencing unravels the molecular diversity in mating loci maintained by long-term balancing selection
PLOS Genetics
2022
Genome Sequence of the Diploid Yeast Debaryomyces hansenii TMW 3.1188
Microbiology Resource Announcements
2022
cPlot: Contig-Plotting Visualization for the Analysis of Short-Read Nucleotide Sequence Alignments
International Journal of Molecular Sciences
2022
Chromosome-level genome of the venomous snail Kalloconus canariensis: a valuable model for venomics and comparative genomics
GigaScience
2022
Comparative analysis of assembly algorithms to optimize biosynthetic gene cluster identification in novel marine actinomycete genomes
Frontiers in Marine Science
2022
Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes
GigaScience
2022
The first genome for the Cape Primrose Streptocarpus rexii (Gesneriaceae), a model plant for studying meristem‐driven shoot diversity
Plant Direct
2022
Something Fishy about Siamese Fighting Fish (Betta splendens) Sex: Polygenic Sex Determination or a Newly Emerged Sex-Determining Region?
Cells
2022
Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants
Peer Community Journal
2022
Long-read sequencing of the zebrafish genome reorganizes genomic architecture
BMC Genomics
2022
Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium
Microbiology Spectrum
2022
A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae
GigaScience
2022
An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family
Molecular Ecology Resources
2022
The Vinca minor genome highlights conserved evolutionary traits in monoterpene indole alkaloid synthesis
G3 Genes|Genomes|Genetics
2022
De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
Frontiers in Genetics
2022
StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps
Bioinformatics
2022
Widespread false gene gains caused by duplication errors in genome assemblies
Genome Biology
2022
Revealing the species-specific genotype of the edible bird’s nest-producing swiftlet, Aerodramus fuciphagus and the proteome of edible bird’s nest
Food Research International
2022
Non-invasive sex genotyping of paiche Arapaima gigas by qPCR: An applied bioinformatic approach for identifying sex differences
Aquaculture
2022
Discovery of a novel mitochondrial DNA molecule associated with tetrad pollen sterility in potato
BMC Plant Biology
2022
Complete Genome Sequence of Streptomyces albus Strain G153
Microbiology Resource Announcements
2022
The genome of the rice variety LTH provides insight into its universal susceptibility mechanism to worldwide rice blast fungal strains
Computational and Structural Biotechnology Journal
2022
Long-Term Interactions of Salmonella Enteritidis With a Lytic Phage for 21 Days in High Nutrients Media
Frontiers in Cellular and Infection Microbiology
2022
Metagenome-Assembled Genomes of Bacterial Symbionts Associated with Insecticide-Resistant and -Susceptible Individuals of the Glassy-Winged Sharpshooter (Homalodisca vitripennis)
Microbiology Resource Announcements
2021
The haplotype-resolved reference genome of lemon (Citrus limon L. Burm f.)
Tree Genetics & Genomes
2021
Chromosome-level genomes provide insights into genome evolution, organization and size in Epichloe fungi
Genomics
2021
Bifidobacterium catabolism of human milk oligosaccharides overrides endogenous competitive exclusion driving colonization and protection
Gut Microbes
2021
Chromosome-scale genome assembly of the high royal jelly-producing honeybees
Scientific Data
2021
A chromosome-level genome assembly of Cairina moschata and comparative genomic analyses
BMC Genomics
2021
“Jumping Jack”: Genomic Microsatellites Underscore the Distinctiveness of Closely Related Pseudoperonospora cubensis and Pseudoperonospora humuli and Provide New Insights Into Their Evolutionary Past
Frontiers in Microbiology
2021
Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development
Genome Biology and Evolution
2021
Genome announcement ofSteinernema khuongiand its associated symbiont from Florida
G3 Genes|Genomes|Genetics
2021
Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly
International Journal of Molecular Sciences
2021
Pervasive hybridization with local wild relatives in Western European grapevine varieties
Science Advances
2021
Recent advances in Cannabis sativa genomics research
New Phytologist
2021
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
Biology
2021
Chromosomal-scale de novo genome assemblies of Cynomolgus Macaque and Common Marmoset
Scientific Data
2021
Genome features of common vetch (Vicia sativa) in natural habitats
Plant Direct
2021
Construction of a chromosome‐level genome and variation map for the Pacific oyster Crassostrea gigas
Molecular Ecology Resources
2021
Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish
Scientific Reports
2021
A new genome allows the identification of genes associated with natural variation in aluminium tolerance inBrachiariagrasses
Journal of Experimental Botany
2021
A near complete genome for goat genetic and genomic research
Genetics Selection Evolution
2021
Genome of the pincer wasp Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation
BMC Biology
2021
Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study
BMC Genomics
2021
Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency
Life Science Alliance
2021
Genomic diversity, chromosomal rearrangements, and interspecies hybridization in the Ogataea polymorpha species complex
G3
2021
Igh Locus Polymorphism May Dictate Topological Chromatin Conformation and V Gene Usage in the Ig Repertoire
Frontiers in Immunology
2021
High‐quality chromosome‐level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes
Molecular Ecology Resources
2021
Characterization of novel zebrafish MHC class I U lineage genes and their haplotype
Developmental & Comparative Immunology
2021
Chromosome-level genome assembly of the blue crab,Callinectes sapidus
G3 Genes|Genomes|Genetics
2021
Origin and Evolution of the Gene Family of Proteinaceous Pheromones, the Exocrine Gland-Secreting Peptides, in Rodents
Molecular Biology and Evolution
2021
Third-generation sequencing revises the molecular karyotype for Toxoplasma gondii and identifies emerging copy number variants in sexual recombinants
Genome Research
2021
Genome sequence of the oyster mushroom Pleurotus ostreatus strain PC9
G3
2021
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
BMC Genomics
2021
Nanopore/Illumina Hybrid Genome Sequence Resource for Corynespora cassiicola Strain XJ Infecting Rubber Tree in China
Plant Disease
2021
Genomic analyses of two Italian oyster mushroom Pleurotus pulmonarius strains
G3
2021
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
Journal of Fungi
2021
High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa
Fungal Diversity
2021
Draft genome and transcriptome analyses of halophyte rice Oryza coarctata provide resources for salinity and submergence stress response factors
Physiologia Plantarum
2021
A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis
G3 Genes|Genomes|Genetics
2021
De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification
Animal Genetics
2021
LD-CNV: rapid and simple discovery of chromosomal translocations using linkage disequilibrium between copy number variable loci
Genetics
2021
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
Scientific Reports
2021
The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation
BMC Biology
2021
Factors enforcing the species boundary between the human pathogens Cryptococcus neoformans and Cryptococcus deneoformans
PLOS Genetics
2021
Enrichment of phytoplasma genome DNA through a methyl-CpG binding domain-mediated method for efficient genome sequencing
Journal of General Plant Pathology
2021
Conserved and non‐conserved triggers of 24‐nucleotide reproductive phasiRNAs in eudicots
The Plant Journal
2021
Chromosome-level <i>de novo</i> genome assemblies of over 100 plant species
Breeding Science
2021
Complete Genome Analysis of Undecylprodigiosin Pigment Biosynthesizing Marine Streptomyces Species Displaying Potential Bioactive Applications
Microorganisms
2021
Identification of E484K and other novel SARS-COV-2 variants from the Kingdom of Bahrain
Microbial Pathogenesis
2021
Synteny-Based Genome Assembly for 16 Species ofHeliconiusButterflies, and an Assessment of Structural Variation across the Genus
Genome Biology and Evolution
2021
Draft Genome Sequence of Pandoravirus japonicus Isolated from the Sabaishi River, Niigata, Japan
Microbiology Resource Announcements
2021
Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
GigaScience
2021
High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii)
Horticulture Research
2021
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C
Nature Communications
2021
Comparative Genomics Sheds Light on the Convergent Evolution of Miniaturized Wasps
Molecular Biology and Evolution
2021
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Science Advances
2021
Improved draft reference genome for the Glassy-winged Sharpshooter (Homalodisca vitripennis), a vector for Pierce’s disease
G3 Genes|Genomes|Genetics
2021
The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE , Spread Unnoticed
mSystems
2021
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
Molecular Ecology Resources
2021
Structure and Phylogeny of the Curly Birch Chloroplast Genome
Frontiers in Genetics
2020
Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
Genome Biology
2020
Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity
G3 Genes|Genomes|Genetics
2020
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
BMC Biology
2020
Improved Brassica oleracea JZS assembly reveals significant changing of LTR-RT dynamics in different morphotypes
Theoretical and Applied Genetics
2020
Solyntus, the New Highly Contiguous Reference Genome for Potato (Solanum tuberosum)
G3&amp;#58; Genes|Genomes|Genetics
2020
Critical length in long-read resequencing
NAR Genomics and Bioinformatics
2020
De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
G3 Genes|Genomes|Genetics
2020
Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin
Current Biology
2020
Analysis of the Mouse Y Chromosome by Single-Molecule Sequencing With Y Chromosome Enrichment
Frontiers in Genetics
2020
Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci
PLOS Genetics
2020
A de novo assembly of the sweet cherry (Prunus avium cv. Tieton) genome using linked-read sequencing technology
PeerJ
2020
An Annotated Draft Genome of the Mountain Hare (Lepus timidus)
Genome Biology and Evolution
2020
Multi-omics based characterization of antibiotic response in clinical isogenic isolates of methicillin-susceptible/-resistant Staphylococcus aureus
RSC Advances
2020
Root‐knot nematode genetic diversity associated with host compatibility to sweetpotato cultivars
Molecular Plant Pathology
2020
Genomic Epidemiology of Salmonella Infantis in Ecuador: From Poultry Farms to Human Infections
Frontiers in Veterinary Science
2020
Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
BMC Genomics
2020
Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements
GigaScience
2020
An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data
BMC Genomics
2020
A novel Sporothrix brasiliensis genomic variant in Midwestern Brazil: evidence for an older and wider sporotrichosis epidemic
Emerging Microbes & Infections
2020
Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies
BMC Genomics
2020
High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus
G3 Genes|Genomes|Genetics
2020
Complex Evolutionary History of the Y Chromosome in Flies of the Drosophila obscura Species Group
Genome Biology and Evolution
2020
Chromosome‐level assembly of wild Bactrian camel genome reveals organization of immune gene loci
Molecular Ecology Resources
2020
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Cells
2020
Analysis of Metabolites and Gene Expression Changes Relative to Apricot (Prunus armeniaca L.) Fruit Quality During Development and Ripening
Frontiers in Plant Science
2020
Construction of a chromosome-scale long-read reference genome assembly for potato
GigaScience
2020
Evolutionary Dynamics of Abundant 7-bp Satellites in the Genome ofDrosophila virilis
Molecular Biology and Evolution
2020
Chromosome-Scale Assembly of Winter Oilseed Rape Brassica napus
Frontiers in Plant Science
2020
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
Nature Plants
2020
Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1
Data in Brief
2020
Hybridization and introgression drive genome evolution of Dutch elm disease pathogens
Nature Ecology & Evolution
2020
Chromosome-Level Assembly of Drosophila bifasciata Reveals Important Karyotypic Transition of the X Chromosome
G3 Genes|Genomes|Genetics
2020
The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga
Marine Genomics
2019
Whole-Genome Sequence of an Isogenic Haploid Strain, Saccharomyces cerevisiae IR-2 id A30( MAT a), Established from the Industrial Diploid Strain IR-2
Microbiology Resource Announcements
2019
De novo phased assembly of the Vitis riparia grape genome
Scientific Data
2019
Draft Genome Assembly and Annotation of the Gila Topminnow Poeciliopsis occidentalis
Frontiers in Ecology and Evolution
2019
Using long and linked reads to improve an Atlantic herring (Clupea harengus) genome assembly
Scientific Reports
2019
Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary
Molecular Ecology Resources
2019
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation
Nature Communications
2019
Improved Reference Genome Sequence of Coccidioides immitis Strain WA_211, Isolated in Washington State
Microbiology Resource Announcements
2019
Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.)
GigaScience
2019
To Trim or Not to Trim: Effects of Read Trimming on the De Novo Genome Assembly of a Widespread East Asian Passerine, the Rufous-Capped Babbler (Cyanoderma ruficeps Blyth)
Genes
2019
Genome Announcement: The Draft Genomes of Two Radopholus similis populations from Costa Rica
Journal of Nematology
2019
Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)
DNA Research
2019
Global population genomics of the forest pathogen Dothistroma septosporum reveal chromosome duplications in high dothistromin‐producing strains
Molecular Plant Pathology
2019
Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes
Microbiome
2019
A chromosome-scale assembly of the major African malaria vector Anopheles funestus
GigaScience
2019
The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity
International Journal of Molecular Sciences
2019
Genome analysis and genetic transformation of a water surface-floating microalga Chlorococcum sp. FFG039
Scientific Reports
2019
SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)
GigaScience
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