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2025
How do different ant species mediate CH4 fluxes in slash-burn tropical forest soils?
Soil and Tillage Research
2025
Can high-lipid concentrates offset the high enteric methane production caused by high-forage diets fed to lactating dairy cows?
Journal of Dairy Science
2025
Microbial diurnal rhythmicity in the rumen fluid impacted by feeding regimes and exogenous microbiome providing novel mechanisms regulating dynamics of the rumen microbiome
Microbiome
2025
Impact of grassland saline-alkaline degradation on domestic herbivore rumen microbiota and methane emissions
Frontiers in Veterinary Science
2025
Differential alteration of rumen microbial composition in response to 3-nitrooxypropanol supplementation in dairy cattle fed high-grain and high-forage diets
Journal of Dairy Science
2024
Composition of the rumen microbiome and its association with methane yield in dairy cattle raised in tropical conditions
Molecular Biology Reports
2024
Feed efficiency and enteric methane emissions indices are inconsistent with the outcomes of the rumen microbiome composition
Science of The Total Environment
2024
Programming rumen microbiome development in calves with the anti-methanogenic compound 3-NOP
Animal Microbiome
2024
Fecal microbiota colonization dynamics in dairy heifers associated with early-life rumen microbiota modulation and gut health
Frontiers in Microbiology
2024
Rumen protozoa are a hub for diverse hydrogenotrophic functions
Environmental Microbiology Reports
2024
The effects of residual energy intake on nutrient use, methane emissions and microbial composition in dairy cows
Scientific Reports
2024
Diurnal shifts of rumen fermentation and microbial profiles revealed circadian rhythms of rumen bacteria, methanogens, and protozoa under high-grain and high-forage diets
JDS Communications
2024
Ruminal Microbiome Differences in Angus Steers with Differing Feed Efficiencies during the Feedlot Finishing Phase
Microorganisms
2024
Recent Advances in the Phylogenetic Analysis to Study Rumen Microbiome
Current Bioinformatics
2024
Flavonoids from citrus peel display potential synergistic effects on inhibiting rumen methanogenesis and ammoniagenesis: a microbiome perspective
Environmental Science and Pollution Research
2024
Isolation and characterization of Methanosphaera sp. ISO3-F5, a member of a novel and widespread species of rumen methanogens growing with methanol plus hydrogen
The Microbe
2023
Enhancing rumen microbial diversity and its impact on energy and protein metabolism in forage-fed goats
Frontiers in Veterinary Science
2023
Rumen microbial composition associated with the non‐glucogenic to glucogenic short‐chain fatty acids ratio in Holstein cows
Animal Science Journal
2023
Evolving understanding of rumen methanogen ecophysiology
Frontiers in Microbiology
2023
Effects of different feeding systems on ruminal fermentation, digestibility, methane emissions, and microbiota of Hanwoo steers
Journal of Animal Science and Technology
2023
Comparative analysis of macroalgae supplementation on the rumen microbial community: Asparagopsis taxiformis inhibits major ruminal methanogenic, fibrolytic, and volatile fatty acid-producing microbes in vitro
Frontiers in Microbiology
2023
Evaluation of the representative of using rumen fluid samples from lambs fed pelleted TMR for analysis of prokaryotic communities
Frontiers in Microbiology
2023
Validation of a minimally-invasive method for sampling epithelial-associated microorganisms on the rumen wall
Frontiers in Animal Science
2023
Multi-breed host rumen epithelium transcriptome and microbiome associations and their relationship with beef cattle feed efficiency
Scientific Reports
2023
Effect of rumen microbiota transfaunation on the growth, rumen fermentation, and microbial community of early separated Japanese Black cattle
Animal Science Journal
2023
Effect of a garlic and citrus extract supplement on performance, rumen fermentation, methane production, and rumen microbiome of dairy cows
Journal of Dairy Science
2022
Taxonomic and predicted functional signatures reveal linkages between the rumen microbiota and feed efficiency in dairy cattle raised in tropical areas
Frontiers in Microbiology
2022
Do we need to change our perspective about gut biomarkers? A public data mining approach to identify differentially abundant bacteria in intestinal inflammatory diseases
Frontiers in Cellular and Infection Microbiology
2022
Ecosystem-specific microbiota and microbiome databases in the era of big data
Environmental Microbiome
2022
Effect of Long-Term Supplementation With Silkworm Pupae Oil on the Methane Yield, Ruminal Protozoa, and Archaea Community in Sheep
Frontiers in Microbiology
2022
Mutual Exclusion of Methanobrevibacter Species in the Human Gut Microbiota Facilitates Directed Cultivation of a Candidatus Methanobrevibacter Intestini Representative
Microbiology Spectrum
2022
Fresh Rumen Liquid Inoculant Enhances the Rumen Microbial Community Establishment in Pre-weaned Dairy Calves
Frontiers in Microbiology
2022
Stool and Ruminal Microbiome Components Associated With Methane Emission and Feed Efficiency in Nelore Beef Cattle
Frontiers in Genetics
2022
Long-term effects of early-life rumen microbiota modulation on dairy cow production performance and methane emissions
Frontiers in Microbiology
2022
Effect of silkworm (Bombyx mori) pupae oil supplementation on enteric methane emission and methanogens diversity in sheep
Animal Biotechnology
2022
Microbial colonisation of tannin-rich tropical plants: Interplay between degradability, methane production and tannin disappearance in the rumen
animal
2022
Microbiome and fermentation parameters in the rumen of dairy buffalo in response to ingestion associated with a diet supplemented with cysteamine and hemp seed oil
Journal of Animal Physiology and Animal Nutrition
2022
Tailored Nanoparticles With the Potential to Reduce Ruminant Methane Emissions
Frontiers in Microbiology
2022
Induction of mastitis by cow-to-mouse fecal and milk microbiota transplantation causes microbiome dysbiosis and genomic functional perturbation in mice
Animal Microbiome
2022
Diversity of rumen microbiota using metagenome sequencing and methane yield in Indian sheep fed on straw and concentrate diet
Saudi Journal of Biological Sciences
2022
Evaluation of a Colombian oregano oil (Lippia origanoides Kunth) and a novel yeast product from Pichia guilliermondii, alone or in combination, on rumen fermentation, methanogenesis and the microbiome in the rumen simulation technique
Frontiers in Animal Science
2022
Cross-reactivity of antibodies to different rumen methanogens demonstrated using immunomagnetic capture technology
Frontiers in Microbiology
2022
Effects of Grass Silage Additive Type and Barley Grain Preservation Method on Rumen Fermentation, Microbial Community and Milk Production of Dairy Cows
Agriculture
2021
Association between fecal methanogen species with methane production and grazed forage intake of beef heifers classified for residual feed intake under drylot conditions
Animal
2021
BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities
mSystems
2021
Interactions between Anaerobic Fungi and Methanogens in the Rumen and Their Biotechnological Potential in Biogas Production from Lignocellulosic Materials
Microorganisms
2021
Presence of Adult Companion Goats Favors the Rumen Microbial and Functional Development in Artificially Reared Kids
Frontiers in Veterinary Science
2021
Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet
PLOS ONE
2021
Inoculation with rumen fluid in early life accelerates the rumen microbial development and favours the weaning process in goats
Animal Microbiome
2021
Effect of Divergent Feeding Regimes During Early Life on the Rumen Microbiota in Calves
Frontiers in Microbiology
2021
Effect of Methane Inhibitors on Ruminal Microbiota During Early Life and Its Relationship With Ruminal Metabolism and Growth in Calves
Frontiers in Microbiology
2021
Identifying active rumen epithelial associated bacteria and archaea in beef cattle divergent in feed efficiency using total RNA-seq
Current Research in Microbial Sciences
2021
Dynamics of the ruminal microbial ecosystem, and inhibition of methanogenesis and propiogenesis in response to nitrate feeding to Holstein calves
Animal Nutrition
2021
Microbial colonization of the gastrointestinal tract of dairy calves – a review of its importance and relationship to health and performance
Animal Health Research Reviews
2021
Feed additives as a strategic approach to reduce enteric methane production in cattle: modes of action, effectiveness and safety
Animal Production Science
2021
Prokaryotic community diversity during bioremediation of crude oil contaminated oilfield soil: effects of hydrocarbon concentration and salinity
Brazilian Journal of Microbiology
2021
Effects of Starch Level and a Mixture of Sunflower and Fish Oils on Nutrient Intake and Digestibility, Rumen Fermentation, and Ruminal Methane Emissions in Dairy Cows
Animals
2021
The role of Methanomassiliicoccales in trimethylamine metabolism in the rumen of dairy cows
Animal
2021
Effects of long-acting, broad spectra anthelmintic treatments on the rumen microbial community compositions of grazing sheep
Scientific Reports
2020
Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax)
mBio
2020
The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen
Journal of Animal Science and Biotechnology
2020
Sex Work Is Associated With Increased Vaginal Microbiome Diversity in Young Women From Mombasa, Kenya
JAIDS Journal of Acquired Immune Deficiency Syndromes
2020
The enrichment of anaerobic fungi and methanogens showed higher lignocellulose degrading and methane producing ability than that of bacteria and methanogens
World Journal of Microbiology and Biotechnology
2020
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets
Microbiome
2020
Synthetic Sequencing Standards: A Guide to Database Choice for Rumen Microbiota Amplicon Sequencing Analysis
Frontiers in Microbiology
2020
Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation
PLOS ONE
2020
Investigating temporal microbial dynamics in the rumen of beef calves raised on two farms during early life
FEMS Microbiology Ecology
2020
Seasonal and Nutrient Supplement Responses in Rumen Microbiota Structure and Metabolites of Tropical Rangeland Cattle
Microorganisms
2020
Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows
Journal of Animal Breeding and Genetics
2020
Effects of Thymol Supplementation on Goat Rumen Fermentation and Rumen Microbiota In Vitro
Microorganisms
2019
Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework
PeerJ
2019
Changes in the Rumen Microbiota of Cows in Response to Dietary Supplementation with Nitrate, Linseed, and Saponin Alone or in Combination
Applied and Environmental Microbiology
2019
Temporal fermentation and microbial community dynamics in rumens of sheep grazing a ryegrass-based pasture offered either in the morning or in the afternoon
Animal
2019
Supplementation of live yeast based feed additive in early life promotes rumen microbial colonization and fibrolytic potential in lambs
Scientific Reports
2019
Maternal versus artificial rearing shapes the rumen microbiome having minor long‐term physiological implications
Environmental Microbiology
2019
Nutrient-based diet modifications impact on the gut microbiome of the Javan slow loris (Nycticebus javanicus)
Scientific Reports
2019
Methane Emission, Rumen Fermentation, and Microbial Community Response to a Nitrooxy Compound in Low-Quality Forage Fed Hu Sheep
Current Microbiology
2019
Heterogeneous development of methanogens and the correlation with bacteria in the rumen and cecum of sika deer (Cervus nippon) during early life suggest different ecology relevance
BMC Microbiology
2019
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements
Animal Microbiome
2019
Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle
Microbiome
2019
Food Microbiology
2019
Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle
Microbiome
2019
A Multi-Kingdom Study Reveals the Plasticity of the Rumen Microbiota in Response to a Shift From Non-grazing to Grazing Diets in Sheep
Frontiers in Microbiology
2018
Symposium review: Mining metagenomic and metatranscriptomic data for clues about microbial metabolic functions in ruminants
Journal of Dairy Science
2018
The bacterial and archaeal community structures and methanogenic potential of the cecal microbiota of goats fed with hay and high-grain diets
Antonie van Leeuwenhoek
2018
Ruminal fermentation and microbial community differently influenced by four typical subtropical forages in vitro
Animal Nutrition
2018
Small differences in ombrotrophy control regional-scale variation in methane cycling among Sphagnum-dominated peatlands
Biogeochemistry
2018
Comparative Genomic Analysis of Members of the GeneraMethanosphaeraandMethanobrevibacterReveals Distinct Clades with Specific Potential Metabolic Functions
Archaea
2018
In Vitro Response of Rumen Microbiota to the Antimethanogenic Red Macroalga Asparagopsis taxiformis
Microbial Ecology
2018
Exploring the Prokaryotic Community Associated With the Rumen Ciliate Protozoa Population
Frontiers in Microbiology
2018
Review: The application of omics to rumen microbiota function
Animal
2018
3-NOP vs. Halogenated Compound: Methane Production, Ruminal Fermentation and Microbial Community Response in Forage Fed Cattle
Frontiers in Microbiology
2018
The effect of an isoflavonid-rich liquorice extract on fermentation, methanogenesis and the microbiome in the rumen simulation technique
FEMS Microbiology Ecology
2018
Comparative study of rumen fermentation and microbial community differences between water buffalo and Jersey cows under similar feeding conditions
Journal of Applied Animal Research
2018
TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution
mSphere
2018
Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future
Frontiers in Microbiology
2018
Effectiveness of Interventions to Modulate the Rumen Microbiota Composition and Function in Pre-ruminant and Ruminant Lambs
Frontiers in Microbiology
2018
Antibiotic‐mediated bacteriome depletion in ApcMin/+ mice is associated with reduction in mucus‐producing goblet cells and increased colorectal cancer progression
Cancer Medicine
2017
The Structural and Functional Capacity of Ruminal and Cecal Microbiota in Growing Cattle Was Unaffected by Dietary Supplementation of Linseed Oil and Nitrate
Frontiers in Microbiology
2017
Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows
PLOS ONE
2017
Age-Related Response of Rumen Microbiota to Mineral Salt and Effects of Their Interactions on Enteric Methane Emissions in Cattle
Microbial Ecology
2017
Methane Production in Dairy Cows Correlates with Rumen Methanogenic and Bacterial Community Structure
Frontiers in Microbiology
2017
Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet
Frontiers in Microbiology
2017
Shifts in Host Mucosal Innate Immune Function Are Associated with Ruminal Microbial Succession in Supplemental Feeding and Grazing Goats at Different Ages
Frontiers in Microbiology
2017
Effect of Pre-weaning Diet on the Ruminal Archaeal, Bacterial, and Fungal Communities of Dairy Calves
Frontiers in Microbiology
2017
Comparative community structure of archaea in rumen of buffaloes and cattle
Journal of the Science of Food and Agriculture
2017
The Draft Genome of the Non-Host-AssociatedMethanobrevibacter arboriphilusStrain DH1 Encodes a Large Repertoire of Adhesin-Like Proteins
Archaea
2017
Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment
Microbiome
2017
Enhancing the Resolution of Rumen Microbial Classification from Metatranscriptomic Data Using Kraken and Mothur
Frontiers in Microbiology
2017
The community structure of Methanomassiliicoccales in the rumen of Chinese goats and its response to a high-grain diet
Journal of Animal Science and Biotechnology
2017
Role of Age-Related Shifts in Rumen Bacteria and Methanogens in Methane Production in Cattle
Frontiers in Microbiology
2017
Changes in rumen microbiota composition and in situ degradation kinetics during the dry period and early lactation as affected by rate of increase of concentrate allowance
Journal of Dairy Science
2016
Bacterial microbiota associated with flower pollen is influenced by pollination type, and shows a high degree of diversity and species‐specificity
Environmental Microbiology
2016
The complete genome sequence of the methanogenic archaeon ISO4-H5 provides insights into the methylotrophic lifestyle of a ruminal representative of the Methanomassiliicoccales
Standards in Genomic Sciences
2016
Complete Genome Sequence of Methanogenic Archaeon ISO4-G1, a Member of the Methanomassiliicoccales , Isolated from a Sheep Rumen
Genome Announcements
2016
An adhesin from hydrogen‐utilizing rumen methanogen Methanobrevibacter ruminantium M1 binds a broad range of hydrogen‐producing microorganisms
Environmental Microbiology
2016
Draft Genome Sequences of Methanobrevibacter curvatus DSM11111, Methanobrevibacter cuticularis DSM11139, Methanobrevibacter filiformis DSM11501, and Methanobrevibacter oralis DSM7256
Genome Announcements
2016
Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community
PLOS ONE
2016
Stability of peatland carbon to rising temperatures
Nature Communications
2016
A Metagenomics Approach to Evaluate the Impact of Dietary Supplementation with Ascophyllum nodosum or Laminaria digitata on Rumen Function in Rusitec Fermenters
Frontiers in Microbiology
2016
An Integrated Multi-Omics Approach Reveals the Effects of Supplementing Grass or Grass Hay with Vitamin E on the Rumen Microbiome and Its Function
Frontiers in Microbiology
2016
Draft Genome Sequence of the Rumen Methanogen Methanobrevibacter olleyae YLM1
Genome Announcements
2015
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
Scientific Reports
2015
Classifying the bacterial gut microbiota of termites and cockroaches: A curated phylogenetic reference database (DictDb)
Systematic and Applied Microbiology
2015
Few Highly Abundant Operational Taxonomic Units Dominate within Rumen Methanogenic Archaeal Species in New Zealand Sheep and Cattle
Applied and Environmental Microbiology
2015
16S rDNA analysis of archaea indicates dominance of Methanobacterium and high abundance of Methanomassiliicoccaceae in rumen of Nili-Ravi buffalo
Anaerobe
2015
Springer Protocols Handbooks
2015
Toward the identification of methanogenic archaeal groups as targets of methane mitigation in livestock animalsr
Frontiers in Microbiology
2015
Buccal Swabbing as a Noninvasive Method To Determine Bacterial, Archaeal, and Eukaryotic Microbial Community Structures in the Rumen
Applied and Environmental Microbiology
2015
Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows
Frontiers in Microbiology
2015
Does Dietary Mitigation of Enteric Methane Production Affect Rumen Function and Animal Productivity in Dairy Cows?
PLOS ONE
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