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2025
Metagenomic assembly insight into the antibiotic resistance genes and antibiotic resistant bacteria in packaged drinking water system
Journal of Environmental Chemical Engineering
2025
Evaluation of DNA barcoding reference databases for marine species in the western and central Pacific Ocean
PeerJ
2025
Optimizing fungal DNA extraction and purification for Oxford Nanopore untargeted shotgun metagenomic sequencing from simulated hemoculture specimens
mSystems
2024
A global perspective on the abundance, diversity and mobility of antibiotic resistance genes in Escherichia coli
Frontiers in Veterinary Science
2024
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
Briefings in Functional Genomics
2023
Improving Species Level‐taxonomic Assignment from 16S rRNA Sequencing Technologies
Current Protocols
2023
Host metabolome and faecal microbiome shows potential interactions impacted by age and weaning times in calves
Animal Microbiome
2023
Using nanopore sequencing to identify fungi from clinical samples with high phylogenetic resolution
Scientific Reports
2023
Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy
Viruses
2023
Benchmarking and Validation of a Bioinformatics Workflow for Meat Species Identification Using 16S rDNA Metabarcoding
Foods
2022
MTSv: rapid alignment-based taxonomic classification and high-confidence metagenomic analysis
PeerJ
2022
Drastic reduction of false positive species in samples of insects by intersecting the default output of two popular metagenomic classifiers
PLOS ONE
2021
The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota
Microbiome
2020
Transcriptomics of the Rooibos (Aspalathus linearis) Species Complex
BioTech
2019
Recentrifuge: Robust comparative analysis and contamination removal for metagenomics
PLOS Computational Biology
2019
Benchmarking Metagenomics Tools for Taxonomic Classification
Cell
2018
Metagenomic Next-Generation Sequencing Reveals Individual Composition and Dynamics of Anelloviruses during Autologous Stem Cell Transplant Recipient Management
Viruses
2018
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018
Microbiome
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