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Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji

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Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji
Effects of sandfish (Holothuria scabra) removal on shallow-water sediments in Fiji
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RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
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RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
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RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
Retweeted Sangeeta Mangubhai (@smangubhai): Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #MarineBiology #Biogeochemistry @akford1906
Retweeted Sangeeta Mangubhai (@smangubhai): Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #MarineBiology #Biogeochemistry @akford1906
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
8 days ago
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
RT @smangubhai: Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #M…
Fijian scientist Steven Lee article has been published today in @thePeerJ #Biochemistry #Ecology #MarineBiology #Biogeochemistry @akford1906


Marine coastal ecosystems are among the most productive and diverse on earth (Poore & Wilson, 1993). Coastal communities are reliant on the various ecosystem functions and services these areas provide for their livelihoods (Conservation International, 2008). Recent studies have identified significant ecological impacts when benthic marine organisms were removed from these ecosystems (Lohrer, Thrush & Gibbs, 2004; Solan et al., 2004). A loss in bioturbation (the biogenic mixing of sediment) has been demonstrated following the reduction in abundance and diversity of marine benthic fauna (Solan et al., 2004). This loss is of particular concern as bioturbation has a substantial influence on the rate of organic matter (OM) decomposition and nutrient recycling (Meysman et al., 2006). Efficient processing of OM and nutrients in marine coastal ecosystems is crucial to the health and productivity of these ecosystems, and as such is vital to the coastal communities dependent on them.

The majority of OM in marine coastal ecosystems is trapped in permeable reef sands and degraded by the infaunal community, particularly high densities of sand-associated microbes (Wild et al., 2004). Due to the high surface area of permeable carbonate reef sands and advective flow into and within the sediment, these sandy sediments promote efficient degradation of OM (Wild et al., 2004; Wild, Laforsch & Huettel, 2006). Such sandy sediments have consequently been referred to as a biocatalytic filter system, promoting critical recycling processes (Wild, Tollrian & Huettel, 2004; Huettel, Wild & Gonelli, 2006). Benthic-pelagic coupling implies that changes in the OM concentration of overlying water are integrated and reflected in sediments, and furthermore implies that changes in sediment OM composition affect the overlying water quality (Wild, Tollrian & Huettel, 2004). Thus, the efficient functioning of this biocatalytic filter system provides coastal ecosystems—which are increasingly stressed by OM enrichment from anthropogenic inputs (Halpern et al., 2008; Rabalais et al., 2009)—with buffering capacity. Without the capacity of the system to buffer increasing OM loads, the health of coastal ecosystems could be compromised, resulting for example in shifts from hard coral- to algal-dominated reefs (Fabricius, 2005; D’Angelo & Wiedenmann, 2014).

Coral reefs are a critically important component of coastal ecosystems for the ecosystem services and goods they provide, such as fisheries, coastal protection, and nutrient cycling (Moberg & Folke, 1999). Inshore reefs and their associated ecosystems receive a considerable amount of OM from rivers and marine sources. The quantity of OM that reaches inshore reefs increases following heavy rainfall and flooding events (Briand et al., 2015), delivering a ‘pulse’ of OM that places further stress on the ecosystem. The efficiency of the system to absorb this stress and act as a biocatalytic filter is dependent on a number of factors including temperature, OM supply, light, water currents, and bioturbation (Kristensen, 2000). Bioturbation is particularly important for the efficiency of this filter system (Kristensen, 2000) as it increases the surface area of the sediment, breaks down geochemical gradients, and maximizes advective flow into the sediment (Thibodeaux & Boyle, 1987; Kristensen, 2000; Lohrer, Thrush & Gibbs, 2004; Meysman, Middelburg & Heip, 2006).

Deposit feeding sea cucumbers mainly of the order Holothuriida potentially play a significant role in enhancing OM mineralization through bioturbation as well as through feeding and excretion (Uthicke, 1999; Uthicke, 2001a; Uthicke, 2001b; Purcell, 2004; Wolkenhauer et al., 2010; MacTavish et al., 2012). Whilst sea cucumbers were once a ubiquitous component of many coastal marine benthic communities, growing demand from Asian markets for their dried form—known as bêche-de-mer—has driven their overexploitation, leading to population collapse and local extinctions throughout the Indo-Pacific (e.g., Toral-Granda, Lovatelli &, Vasconcellos, 2008; Friedman et al., 2009; Friedman et al., 2011; Purcell et al., 2013). Sandfish, Holothuria scabra (Jaeger, 1833), is one of the highest valued species in the bêche-de-mer trade (Purcell, 2014). Individuals of this species are easily accessible to fishers as they generally inhabit low energy environments behind fringing reefs or within protected bays and shores (Hamel et al., 2001), rendering the species particularly vulnerable to overexploitation. H. scabra exhibits a natural diurnal burying cycle and ingests a considerable amount of sediment during feeding, thus playing a key role in bioturbation (Mercier, Battaglene & Hamel, 1999; Purcell, 2004). Historically this species was found in densities of up to 2 individuals m−2 (Hamel et al., 2001), implying that its bioturbation impact on inshore reef habitats is likely to have been substantial.

Inshore reef ecosystems are very dynamic environments in which conditions exhibit a large variation of temperature, salinity, turbidity, and wave energy, all of which influence sediment function and sea cucumber behavior (Mercier, Battaglene & Hamel, 1999; Mercier, Battaglene & Hamel, 2000). Initial studies investigating the ecological roles of sea cucumbers and sediment function have mainly been conducted ex situ or using mesocosms (e.g., Uthicke, 1999). Given the nature of inshore reef ecosystems, in situ studies are required to obtain more realistic results (see Wolkenhauer et al., 2010; Namukose et al., 2016).

Sedimentary O2 consumption (SOC) and sediment O2 penetration depth (OPD) provide a proxy for the function of sediment as a biocatalytic filter system. SOC reflects the respiration of the entire sedimentary community contained in a core and integrates OM deposited from the overlying water column (Nickell et al., 2003). O2 penetration depth (OPD) determines the REDOX reactions occurring within the sediment, and thus the volume of sediment effectively participating in aerobic OM decomposition (Glud, 2008). Furthermore, sea cucumber feeding can alter grain size distribution through dissolution of calcium carbonate via acidity and potentially abrasion processes in their gut (Hammond, 1981; Schneider et al., 2011). As the composition of sediment grain size influences sediment O2 dynamics (Urumović & Urumović, 2014), changes in grain size distribution caused by sea cucumbers may account for changes in SOC and OPD.

The current study aimed to understand how the removal of sea cucumbers affects sedimentary function through in situ experimental manipulations of H. scabra densities, thus providing information on the poorly understood ecological implications of sea cucumber fisheries. We hypothesized that high densities of H. scabra would facilitate the efficient degradation of OM. Thus, in areas with H. scabra, SOC rates were expected to decrease or remain relatively lower, and OPD was expected to increase compared to those areas devoid of H. scabra. Finally, sediment turnover—the amount of sediment ingested by H. scabra—was quantified as a proxy for the bioturbation potential of the animal.


Study site

The experiment was conducted between August 2015 and February 2016 on an extensive reef flat in front of Natuvu village, Wailevu East District, Vanua Levu, Fiji (16°44.940′S 179°9.280′E) (Fig. 1). The reef flat was part of the locally-managed marine area (LMMA) of the local villages. The entire reef flat covered an area of roughly 1.2 km2, and contained a tabu area (periodically harvested closure). This tabu area supported a relatively high density of H. scabra compared to the wider region, which was closer to regional reference values (Pakoa et al., 2013). The remoteness of the study site and lack of electricity and infrastructure unfortunately prohibited reliable OM measurements.

Map of the study site.

Figure 1: Map of the study site.

Location of Wailevu East District, Vanua Levu, Fiji (A), and the location of the study site (Natuvu) as indicated by a triangle (B).

A pilot survey of the site using 100 m × 2 m belt transects was conducted various times throughout the day and night, and during various tides in order to optimize estimates of the population density, and burying and feeding behavior of H. scabra throughout a 24 h cycle.

Enclosure design and construction

Sixteen square plots were demarcated on the reef flat, comprising four treatments: three types of enclosures and one control (n = 4 treatment−1). Treatments included (i) high density (high) (ca. 350 g m−2—based on the in situ carrying capacity for H. scabra) (Namukose et al., 2016; Lavitra, Rasolofonirina & Eeckhaut, 2010; Purcell & Simutoga, 2008; Battaglene, Evizel & Ramofafia, 1999), (ii) exclusion (exclusion) (0 g m−2—simulating overexploitation), (iii) natural density (natural) (ca. 60 g m−2—determined by a pilot survey at the study site), and (iv) control plots (uncaged control, plots without mesh). Comparing between natural density cages and uncaged control treatments, which had the same density of sea cucumbers, allowed assessing the effect of the presence of mesh cages. Enclosures were stocked with H. scabra of length ca. 15 cm, which equates to ca. 200 g ind−1, as this was the most common length of H. scabra in the general area where enclosures were situated. Stocking densities were monitored six days per week and enclosures restocked if necessary. Ca. 15 H. scabra were maintained in high-density enclosures and approximately three in natural-density enclosures. All animals used to stock enclosures were collected from beyond 500 m outside the study site.

The lengths and weights of H. scabra were recorded following similar methods used by Seeto (1994) and Al-Rashdi, Claereboudt & Al-Busaidi (2007). H. scabra individuals were removed from the water and allowed to initially contract and expel water, which happened almost immediately following handling (<3 s). The animal’s length was recorded from anus to mouth by placing a ruler along its ventral surface. All measurements were recorded to the nearest centimeter. The specimens were then placed into containers filled with water from the site. Water in the containers was continuously exchanged to reduce stress on the animals. All H. scabra of the same length were kept together in containers. Following each collection, the animals were taken ashore and weighed on a digital scale (±0.02 g) to the nearest gram. Time from initial capture to weighing was no longer than 1 h. Individuals were allowed to contract and expel water before being weighed, as described above. Following weighing, all sea cucumbers were released back to the site.

Enclosures (3 × 3 m) were designed according to recommendations by Miller & Gaylord (2007) in order to minimise cage effects. Each enclosure was constructed using eight 1.5 m pieces of 16 mm steel re-bar driven vertically into the sediment, with walls comprised of high-density polyethylene diamond mesh with a 40 mm aperture. Re-bars were woven through the mesh and driven ca. 20 cm into the sediment, leaving ca. 80 cm of mesh exposed. Enclosure construction was completed on the second week of September following initial measurements (T = 0).

Enclosures were monitored for any signs of damage, disturbance, or need for restocking once a day—at low tide—six days per week (the community did not allow any work on Sunday for religious reasons). All animals used to restock enclosures were collected from the immediate area around each respective enclosure. The weather was monitored throughout the course of the study using national and regional weather reports (, as well as anecdotal reports from villagers at the study site.

Primary sediment sampling was conducted during the first week of each month. A plot from each treatment (i.e., high, exclusion, natural, and uncaged control) was randomly selected for sediment sampling each day. Sampling generally took place between 0700 h and 0900 h, which coincided with the rising tide, as dissolved O2 levels during this time were at their optimum for SOC measurements.

Grain size distribution

Sediment samples (n = 3 treatment−1) were collected using a corer made from a clear 50 ml syringe (core depth = ca. 30 mm, diameter = ca. 30 mm). Sediment cores for each plot were transferred into individual airtight containers. Sediment cores were washed out of their containers onto a dish using freshwater, then placed in a dry oven at 70 °C for ca. 12 h. Dry sediment samples were weighed and transferred to the top of a sieve column (≥2,000, 1,000, 500, 250, 125, ≤125 µm) attached to a sieve shaker. The sieve column was shaken for seven minutes, and the contents of each sieve then weighed using a ViBRA analytical balance (±0.02 g). If salt in the sediment samples were to influence results, it is likely the smallest grain size fractions would have been affected.

Oxygen penetration depth

Sediment cores from the study site exhibited a clear anoxic layer characterized by consistently dark sediment, which indicates sulphate reduction to hydrogen sulphide by sulphate-reducing bacteria (Castro & Huber, 2012). Therefore, it was possible to determine OPD visually by measuring the distance from the top of the core to the black layer within sediment cores (n = 3 treatment−1, to a depth ≥3 cm) collected in clear 50 ml syringes, following methods adapted from Nilsson & Rosenberg (2000). OPD was only measured from T = 2 onwards, due to time constraints during T = 0 and the initial method trialed during T = 1 being unsuitable.

Sedimentary oxygen consumption

O2 consumption of sediments is driven by respiration of benthic organisms, microbially-mediated oxidation of OM, and reduced inorganic metabolites (Kristensen, 2000), therefore SOC can indicate OM input and degradation at a local level. In situ determination of SOC was based on methods used by Ford et al. (2017). Sediment cores (10 cm3) were collected from enclosures using cut 50 ml syringes and transferred immediately to 160 ml glass incubation chambers. Chambers were subsequently filled with undisturbed water from the overlying water column (n = 4 treatments enclosure−1). O2 concentration, salinity, and temperature were measured using an O2 optode sensor and conductivity probe (MultiLine® IDS 3430; WTW GmbH, Weilheim, Germany; accuracy: ±0.5% of measured value). O2 saturation was consistently between 70–120% at initial measurements. Chambers were sealed airtight before being placed into opaque bags and then placed in an icebox filled with water from the site to maintain a consistent temperature and to ensure light was excluded. After ca. 1 h incubation, chambers were collected and O2 concentration was re-measured. The exact duration (minutes) of each incubation was recorded. Salinity and seawater temperature within the chambers were re-measured to ensure consistency throughout measurements. Controls (n = 3 enclosure−1) contained only undisturbed water from our site, allowing us to account for microbial activity in the overlying water column. O2 consumption in control chambers was averaged and subtracted from sediment SOC chamber rates. SOC values were calculated into mmol O2 m−2 sediment d−1 after accounting for incubation time, vial volume and control measurements.

Sediment turnover

Daily sediment turnover (proxy for bioturbation) by H. scabra was calculated by assuming the quantity of defecated sediment was equal to the quantity of ingested sediment (Uthicke, 1999). H. scabra between lengths of 8–16 cm (n = 27, mean length = 13 cm ± 0.22 SE; mean mass = 145 g ± 6.27 SE) were selected for this parameter as they represent the most abundant size class across the entire reef flat and were found in the three most common habitats outside the enclosures: sand (n = 17), Halodule spp. bed (n = 6), and Syringodium spp. bed (n = 4) (Lee, 2016). Data were collected at flood and ebb tide during both night and day over the course of two weeks in January 2016 (0800 h–2100 h, and random checks for feeding behavior between 0100 h–0500 h). The methodology for this experiment was adapted from a similar study by Uthicke (1999).

Sediment defecated was quantified from trails of faeces behind H. scabra. Markers were driven vertically into the sediment at a standardised distance (ca. 1 cm) behind the posterior end of the animal. Approximately every hour (for 4 h) the animal was relocated, and an additional marker placed at its posterior end. The animal’s length and weight were recorded, and time was noted each time a marker was placed. Six pellets per animal were collected in individual vials during the four hours that the animal was monitored, and the number of pellets between each marker was counted. Sediment pellets were placed in a dry oven at 70 °C for approximately 12 h before weighing on an analytical balance (±0.02 g). Bulk density of sediment at the study site was calculated by comparing the volume of sediment cores to the dry weight of sediment contained within.

Data analysis

Grain size analysis, textural classifications and distribution of sediments were carried out in R using the gran.stats function (rysgran package; Gilbert, Camargo & Sandrini-Neto, 2014) based on methods and verbal classifications by Folk & Ward (1957). Differences in skewness, kurtosis, and median grain size were tested using the aov function in R (built-in function; R Core Team, 2016). The effect of treatment and time on SOC and OPD data were analysed using repeated-measures analyses of variances using the aov function in R (built-in function; R Core Team, 2016), followed by post-hoc students t-tests or Mann Whitney–Wilcox U test (t.test and pairwise.wilcox.test—built-in function; R Core Team, 2016) as appropriate. All multiple comparison post-hoc tests were performed with Bonferroni correction. Paired tests were used to compare a treatment over time, whereas non-paired tests were applied to compare among treatments for a single sample date. Data were tested for normality using a Shapiro–Wilk test and a Quantile-Quantile plot of the residuals, and for homogeneity of variances using a Levene’s test (leveneTestcar package; Fox & Weisberg, 2011). SOC and OPD data were transformed (log10) using R in order to meet assumptions of normality. If these data did not meet the assumptions then the non-parametric Mann Whitney–Wilcox U test (pairwise.wilcox.test—built-in function; R Core Team, 2016) was used. Uncaged control and natural treatments were tested against each other for significant differences at each sampling date; if no significant differences were found then high treatment was compared to exclusion treatment, and natural was compared to exclusion and high treatments.


As indicated above, primary sediment sampling was conducted during the first week of each month. Sampling began in September 2015 (T = 0) and continued each month until February 2016 (T = 5). As enclosures were checked daily and restocked if necessary to maintain stocking densities, the effect of loss of H. scabra between restocking was deemed minimal; overall, restocking was in the range of two to three animals in the high treatment enclosures and one to two animals in cages of the natural treatment. H. scabra would occasionally have to be removed from exclusion treatment enclosures.

Environmental parameters

Water temperature as quantified during initial SOC measurements showed a steady increase between September (T = 0; 23.8 °C ± 0.23 mean ± SE) and December 2015 (T = 3; 26.6 °C ± 0.19), followed by a severe increase between December 2015 and February 2016 (T = 5; 31.2 °C ± 0.07) (Fig. 2A). Heavy rain 10 days prior to sampling in November (T = 2; Fig. 2C) caused coastal flooding, and a tropical depression (Tropical Disturbance 05F; Fiji Meteorological Service, 2015) five days prior to sampling in January (T = 4; Fig. 2C) caused coastal flooding and storm surge at the site.

Plots of results for temperature and rainfall (A), oxygen penetration depth (B), and sediment oxygen consumption (C), at each sampling time.

Figure 2: Plots of results for temperature and rainfall (A), oxygen penetration depth (B), and sediment oxygen consumption (C), at each sampling time.

Arrows in 2C indicate the timing of two particularly strong rainfall events.

Grain size distribution

Throughout the course of the study within all treatments, mean skewness was between 0.01 and 0.07, i.e., near symmetrical, and mean kurtosis was between 0.88 and 0.95, i.e., approximately mesokurtic. Therefore, grain size distribution was approximately normal. Prior to the onset of the experiment (T = 0) there were neither significant differences in grain size fractions between controls (uncaged control vs. natural treatment) nor experimental treatments (high vs. exclusion) (ANOVA; p > 0.05). The uncaged control and natural treatments remained consistent between T = 0 and T = 3 (ANOVA; p =  > 0.05). Over the same time period the high treatment did exhibit two trends, though they are contradictory and neither was significant (ANOVA; p > 0.05). First, there was an increase in median grain size from 0.91 ± 0.09 phi (mean ± SE) to 1.07 ± 0.06 phi (mean ± SE), and second, skewness tended to decrease from 0.04 ± 0.03 (mean ± SE) at T = 0 to 0.01  ± 0.03 (mean ± SE) at T = 3. Despite storm surge affecting the study site five days prior to T = 4, there were no significant differences between treatments at T = 4 and T = 5 (ANOVA; p > 0.05). Changes to grain size distribution between T = 3 and T = 4 were not considered, as the storm surge between these sampling events had visibly shifted sediments.

Oxygen penetration depth

The interaction of treatment and time had a significant effect on OPD (Repeated measures ANOVA; F(9,116), p = 0.02). OPD measurements began at T = 2 of the experiment. Initial (T = 2) OPD were similar between treatments and controls (Mann–Whitney U-test; p > 0.05). By T = 3 the only significant change was an increased OPD in high treatment enclosures (Mann–Whitney U-test; p = 0.03). The exclusion treatment remained consistent (Mann–Whitney U-test; p = 0.37) between T = 2 and T = 3. A distinctly different pattern emerged at T = 5. Whilst high treatment enclosures returned to their earlier state (T = 5 vs. T = 2; U-test, p = 1), OPD in sediment from exclusion treatment enclosures decreased from 32 mm ± 3 at T = 3 to 12 mm ± 2 (mean ± SE) at T = 5, exhibiting a 63% reduction and resulting in a highly significant difference between treatments (Mann–Whitney U-test; p < 0.01). While natural and uncaged control varied over the course of the entire study (Fig. 2B), there were no significant differences between natural and uncaged control at any individual sampling date.

Sedimentary oxygen consumption

The interaction of treatment and time had a significant effect on SOC (Repeated measures ANOVA; F(15,360), p < 0.01). Between T = 0 and T = 1, SOC in exclusion treatment areas initially increased almost two-fold from 43.03 mmol O2 m−2 day−1 ± 4.59 to 75.96 mmol O2 m−2 day−1 ± 4.69 (Mann–Whitney U-test; p < 0.01, Fig. 2C). Over the same time period, high treatment SOC rates remained consistent (Mann–Whitney U-test, p = 0.74). Sediment in exclusion treatment areas had a noticeably higher SOC than high treatment areas at T = 1 and T = 3 (Mann–Whitney U-test; p < 0.01, at both T = 1 and T = 3). Apart from an initially higher SOC rate in the natural compared with the uncaged control treatment at T = 0 (Mann–Whitney U-test; p < 0.01), there were no differences throughout the experimental period. Uncaged control increased significantly from T = 0 to T = 1 (Mann–Whitney U-test, p < 0.01), while natural did not over this time period (Mann–Whitney U-test, p > 0.05). Natural and high treatments only showed a significant difference (Mann–Whitney U-test, p < 0.01) at T = 3, while natural and exclusion treatments only exhibited significant differences at T = 0 and T = 1 (Mann–Whitney U-test, p = 0.02 and p < 0.01, respectively).

Sediment turnover

On average each animal produced 26 sediment pellets h−1 ± 2, which had a mass of 0.36 g ± 0.01. Observations of H. scabra at the study site showed individuals of this species actively fed for 10 h day−1 during daylight hours (0600–1800 h) and were inactive for 14 h day−1; H. scabra at the site generally remained buried during low tide. During daylight hours H. scabra were found at a density of 31 ind. 100 m−2; this equates to 372,000 H. scabra on Natuvu’s ca. 1.2 km2 reef flat (S Lee, 2015, unpublished data). Bulk density of sediment at the site was 0.83 g cm−3 ± 0.01. After incorporating these findings, calculations (Table 1) showed that the H. scabra population on Natuvu’s reef flat had the potential to rework 10,590.84 kg sediment dry weight 1,000 m−2 y−1. Given the bulk density of sediment at the site, the upper 5 mm of sediment in an area of 1,000 m2 would weigh 4,150 kg. Assuming sea cucumbers consume sediment to a depth of 5 mm, which is based on observations noted in Uthicke (1999), the estimated population of H. scabra in 1,000 m2 has the potential to rework the upper 5 mm of sediment approximately two and a half times a year.

Table 1:
Amount of sediment bioturbated by a population of Holothuria scabra.
Average H. scabra densities are taken from a pilot survey (S Lee, 2015, unpublished data), quantity of sediment defecated is assumed equal to that consumed, and sea cucumbers are assumed to consume only the upper 5 mm of sediment (Uthicke, 1999).
Bioturbation potential ofH. scabra−1
Defecation rate 26 sediment pellets h−1× 10 h d−1 260 pellets d−1
Defecation quantity 260 pellets d −1× 0.36 g pellet−1 93.6 g d−1
Annual defecation rate 93.6 g d−1× 365 d 34.164 kg ind y−1
H. scabrapopulation bioturbation (1,000 m−2)
ca. 310 H. scabra 310 ind. × 34.164 kg ind y−1 10,590.84 kg y−1
Available sediment (upper 5 mm)
Area 1,000 m2
Volume of sediment 1,000 m2× 0.005 m 5 m2
Weight of sediment 5 m2× 0.83 g cm−3 4,150 kg
Sediment turnover rate (upper 5 mm 1,000 m−2)
10,590.84 kg y−1/4,150 kg 2.55 times y−1
DOI: 10.7717/peerj.4773/table-1


The current study explored the impact of holothurian removal on sedimentary function in a unique in situ setting. Despite the considerable ‘background noise’ from inherent and uncontrollable factors such as waves, wind, currents and marine benthos, several parameters provided clear evidence that overharvesting of sea cucumbers has a potentially strong effect on the ability of sediment to function as a biocatalytic filter system. The estimated rates of sediment turnover observed here for Holothuria scabra alone are substantial, and are more than twice the turnover recorded for a mixed population of H. atra and Stichopus chlorontus (4,600 kg dry wt yr−1 1,000 m−2), which was estimated to be equivalent to turning over the upper 5 mm of sediment in that area annually (Uthicke, 1999).

Grain size selectivity has not been conclusively demonstrated for H. scabra (e.g., Wiedmeyer, 1982; Tsiresy, Pascal & Plotieau, 2011). However, within the current study, changes to grain size composition in areas of high H. scabra densities and the lack of any changes in their absence indicate that H. scabra are selective to certain grain sizes. This suggests that when sea cucumbers are present on inshore reef flats in high densities, they play a key role in the physical reworking and change of sediment structure in marine ecosystems. Based on the observed non-significant trends, a higher number of samples are suggested for future work. Several sea cucumber species are able to change sediment grain size through dissolution of calcium carbonate via acidity, and potentially abrasion processes, in their gut (Hammond, 1981; Schneider et al., 2011).

Throughout the study SOC rates and OPD exhibited a ‘buffered’ response in high treatment enclosures compared to exclusion enclosures, where they exhibited several large fluctuations. This buffered response was characterized by a predictable pattern with relatively low amplitude changes. Higher SOC rates in the exclusion treatment were consistent with findings by Nickell et al. (2003); these higher SOC rates were likely driven by the increased respiration of benthic fauna, microbially-mediated oxygenation of OM, and reduced inorganic metabolites (Kristensen, 2000; Nickell et al., 2003). Deviations from this trend occurred at T = 2 and T = 4, following coastal flooding ten days prior to T = 2, and storm surge and coastal flooding five days prior to T = 4. Differences between the T = 0 measurements and the strong increase in the uncaged control between T = 0 and T = 1, compared to an absence of changes in the natural treatment over the same time, could be attributed to sampling during different tides, which was rectified for later time-points. Sea cucumbers actively feed on OM, thus reducing its concentration within the sediment (e.g., Uthicke & Karez, 1999; Wolkenhauer et al., 2010). Thus, there should be a higher OM concentration in the sediment of the exclusion treatment compared with that of the high treatment. Relatively higher OM concentrations facilitate increased microbial abundance and activity (MacTavish et al., 2012), in line with the observed higher SOC rates in exclusion treatment enclosures. Similarly, coastal flooding (observed at the study site ten days prior to T = 2 and five days prior to T = 4) likely delivered a strong OM-‘pulse’ onto the reef flat (Briand et al., 2015), explaining the elevated SOC rates even in high treatment enclosures following flooding (Fig. 2C).

The buffering capacity provided by high sea cucumber densities is likely due to the effect of the animals’ feeding, excretion, and bioturbation. Feeding by sea cucumbers acts to ‘clean’ sediments, whereas the subsequent digestion and excretion of waste products plays an important role in nutrient recycling (Purcell et al., 2016). The recycled nutrients stimulate the growth of benthic microalgal communities (e.g., Uthicke & Klumpp, 1998; Uthicke, 2001a), which absorb nutrients and produce O2 through photosynthesis (Stockenreiter et al., 2016). Bioturbation increases advective flow into and within the sediment directly through burying, burrowing, and bio-irrigation (Meysman, Middelburg & Heip, 2006), and indirectly as it increases bed sediment complexity (bioroughness). Bioroughness creates pressure gradients that can increase advective porewater flow up to seven-fold compared to smooth-bed flows (Thibodeaux & Boyle, 1987; Huettel & Gust, 1992), increasing the supply of degradable material and electron acceptors (such as O2) to the sediment (Rusch et al., 2006), and thus promoting aerobic degradation. As aerobic degradation of OM in marine sediments is ca. ten times faster than anaerobic degradation (Kristensen, Ahmed & Devol, 1995; Hulthe, Hulth & Hall, 1998), sea cucumbers promote the efficient degradation of OM in a closely coupled benthic recycling system.

As grain size distribution showed no significant difference between high and exclusion treatment sediments at T = 5, simultaneous changes of OPD are assumed to be caused by the presence of sea cucumbers and not an alteration in sediment structure following storm surge prior to T = 4. Exceptionally high temperatures were recorded at T = 5 (31.2 °C ±0.07) compared with earlier months (T = 0 to T = 3; 25.74 °C ± 0.16) as a result of the 2015/2016 El Niño (Blunden, 2017). High water temperatures recorded at T = 5 coincided with the substantial reduction in sediment OPD of exclusion treatment enclosures. Warmer water temperatures induce microbial growth and respiration (Nydahl, Panigrahi & Wikner, 2013), and the relatively calm conditions for the same time period resulted in limited wave action and thus limited mixing of bed sediment and the overlying water column. Both these factors contribute to an increased SOC and a reduced OPD (Kristensen, 2000; Friedrich et al., 2014). The high, natural and uncaged control treatments did not experience a rapid reduction in OPD, despite being subject to the same environmental conditions. The abrupt and significant reduction in OPD during T = 5 in the exclusion treatment was likely caused by the combined manifestation of local and global stressors: the removal of sea cucumbers and the coinciding rapid increase in sea surface temperature.

Storm surge five days prior to T = 4 had visibly shifted and re-suspended a considerable amount of sediment at the study site. This disturbance would have functioned similarly to bioturbation (e.g., by oxygenating sediment and redistributing OM), explaining the significantly decreased SOC rate in exclusion enclosures at T = 4 (Fig. 2C). Disturbances such as storms, which are projected to increase in intensity as a consequence of climate change (Emanuel, 2013; IPCC, 2014), may thus be able to induce sufficient mixing of bed sediment capable of reducing SOC. However, the same models predict an increase in the severity, frequency, and duration of extreme precipitation events and heat waves (IPCC, 2014). While the global stressor of increased sea surface temperature in the current study had an effect on sediment function in all treatments, the high densities of sea cucumbers in the high treatment were able to buffer such extreme changes, particularly to OPD.

These results suggest a synergistic interaction between local and global stressors, whereby reductions in bioturbation caused by local overexploitation of a key benthic species (Solan et al., 2004) in combination with elevated temperatures led to an amplified effect. As mean sea surface temperatures, warm temperature extremes, and heavy precipitation events are forecast to increase and occur at higher frequency and intensity (IPCC, 2014), bioturbation becomes increasingly important to maintaining and improving sediment quality. Given the mechanisms of benthic-pelagic coupling (Wild, Tollrian & Huettel, 2004), the increased SOC rate and reduced OPD observed in areas void of H. scabra could contribute to deoxygenation of the overlying water column. Hypoxia affects the distribution, abundance, diversity and physiological state of benthic communities (Meyer-Reil & Köster, 2000), and increases the risk of hypoxia-derived mortality for larval stages of several marine organisms (Vaquer-Sunyer & Duarte, 2008).

High densities (350 g m−2) of the sea cucumber H. scabra seem able to enhance the buffering capacity of sediment to stressors such as increased OM load and anoxia. This finding may have particularly strong implications in shallow restricted bodies of water, which are prone to large temperature variability, such as that of Marovo Lagoon, Solomon Islands. In June 2011, the lagoon experienced a large-scale harmful algal bloom, and its subsequent senescence resulted in large-scale hypoxia-derived mortality (Albert, Dunbabin & Skinner, 2012). The authors of the report suggest this event was caused in part by an increase in the catchment nutrient pool, and reduced processing of sediment nutrients and oxygenation of sediment following 15 years of extensive overharvest of sea cucumbers, combined with prolonged warm and calm weather conditions (Albert et al., 2011). As the frequency and severity of record high global temperatures and El Niño events are projected to increase with climate change (Cai et al., 2014; Blunden, 2017), and coastal waters are becoming increasingly eutrophic (Fabricius, 2005), events such as that reported for Marovo Lagoon may become more frequent. As such, the role sea cucumbers play in the bioturbation of inshore sediment becomes increasingly essential to the buffering capacity of tropical coastal marine ecosystems.


This study builds upon previous work investigating the ecosystem role of sea cucumbers. Sandfish (H. scabra) are shown to play a demonstrable function in the role of sediment as a biocatalytic filter system. The combination of global stressors such as elevated sea surface temperatures and the local stressor of sea cucumber removal is of particular concern, as our results suggest potential synergisms resulting in an amplified effect. A consequence of the extensive overexploitation of sea cucumbers is that ecosystem functions and services offered by coastal marine environments in which these animals have been removed is likely compromised. These changes will leave coastal human communities increasingly vulnerable, particularly those of small Pacific islands that rely heavily upon such ecosystem services for their livelihoods and food security. We recommend that management should maintain moderate (in this study 60 g m−2) to high densities (350 g m−2) of sea cucumbers within reef ecosystems. Such densities should allow sea cucumbers to fulfil their role in maintaining sediment function at a scale that has a measurable impact.