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2020
MetaCurator: A hidden Markov model‐based toolkit for extracting and curating sequences from taxonomically‐informative genetic markers
Methods in Ecology and Evolution
2020
Belowground microbial communities respond to water deficit and are shaped by decades of maize hybrid breeding
Environmental Microbiology
2020
Understanding and interpreting community sequencing measurements of the vaginal microbiome
BJOG: An International Journal of Obstetrics & Gynaecology
2020
Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA
Phytobiomes Journal
2020
Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers
npj Biofilms and Microbiomes
2020
Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data
Indian Journal of Medical Research
2020
Joining Illumina paired-end reads for classifying phylogenetic marker sequences
BMC Bioinformatics
2020
Sandy soils amended with bentonite induced changes in soil microbiota and fungistasis in maize fields
Applied Soil Ecology
2020
Characterisation of Extracts and Anti-Cancer Activities of Fomitopsis pinicola
Nutrients
2020
Are you what you eat? A highly transient and prey‐influenced gut microbiome in the grey house spider Badumna longinqua
Molecular Ecology
2020
Benchmarking the MinION: Evaluating long reads for microbial profiling
Scientific Reports
2019
Metagenomic reconstructions of gut microbial metabolism in weanling pigs
Microbiome
2019
Extracellular Enzyme Activity and Its Implications for Organic Matter Cycling in Northern Chinese Marginal Seas
Frontiers in Microbiology
2019
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products
BMC Genomics
2019
Pollen metabarcoding as a tool for tracking long‐distance insect migrations
Molecular Ecology Resources
2019
Species abundance information improves sequence taxonomy classification accuracy
Nature Communications
2019
Proto-dolomite formation in microbial consortia dominated by Halomonas strains
Extremophiles
2019
Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory
European Journal of Clinical Microbiology & Infectious Diseases
2019
Macroalga-Derived Alginate Oligosaccharide Alters Intestinal Bacteria of Atlantic Salmon
Frontiers in Microbiology
2019
Quantitative multi‐locus metabarcoding and waggle dance interpretation reveal honey bee spring foraging patterns in Midwest agroecosystems
Molecular Ecology
2019
Applying biotechnology for drinking water biofiltration: advancing science and practice
Current Opinion in Biotechnology
2019
Metagenomics to Assist in the Diagnosis of Bloodstream Infection
The Journal of Applied Laboratory Medicine
2019
Vaginal Microbiota Composition Correlates Between Pap Smear Microscopy and Next Generation Sequencing and Associates to Socioeconomic Status
Scientific Reports
2019
Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia
mSystems
2019
Protective effect of Lactobacillus reuteri KUB-AC5 against Salmonella Enteritidis challenge in chickens
Beneficial Microbes
2019
Plant assemblages in atmospheric deposition
Atmospheric Chemistry and Physics
2019
The Pedological Context Modulates the Response of Soil Microbial Communities to Agroecological Management
Frontiers in Ecology and Evolution
2019
Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary Probiotics
Frontiers in Microbiology
2019
Anacapa Toolkit : An environmental DNA toolkit for processing multilocus metabarcode datasets
Methods in Ecology and Evolution
2019
Depot Medroxyprogesterone Acetate and the Vaginal Microbiome as Modifiers of Tenofovir Diphosphate and Lamivudine Triphosphate Concentrations in the Female Genital Tract of Ugandan Women: Implications for Tenofovir Disoproxil Fumarate/Lamivudine in Preexposure Prophylaxis
Clinical Infectious Diseases
2019
Embracing Ambiguity in the Taxonomic Classification of Microbiome Sequencing Data
Frontiers in Genetics
2019
Multi-omics and potential applications in wine production
Current Opinion in Biotechnology
2019
Reconstruction of the Functional Ecosystem in the High Light, Low Temperature Union Glacier Region, Antarctica
Frontiers in Microbiology
2019
A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome
Reviews in Aquaculture
2019
Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data
Frontiers in Microbiology
2018
Taxonomy annotation and guide tree errors in 16S rRNA databases
PeerJ
2018
IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences
Microbiome
2018
A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data
PeerJ
2018
A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria)
BMC Research Notes
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