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2021
The RNA-binding protein tristetraprolin regulates RALDH2 expression by intestinal dendritic cells and controls local Treg homeostasis
Mucosal Immunology
2021
Assessment of littoral algal diversity from the northern Gulf of Mexico using environmental DNA metabarcoding
Journal of Phycology
2021
Effects of microbial organic fertilizers on Astragalus membranaceus growth and rhizosphere microbial community
Annals of Microbiology
2021
MinION 16S datasets of a commercially available microbial community enables the evaluation of DNA extractions and data analyses
Data in Brief
2021
Methodological Approaches Frame Insights into Endophyte Richness and Community Composition
Microbial Ecology
2021
Diversity and abundance of antibiotic resistance genes in rhizosphere soil and endophytes of leafy vegetables: Focusing on the effect of the vegetable species
Journal of Hazardous Materials
2021
BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities
mSystems
2021
Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems
Scientific Reports
2021
Characterizing the growing microorganisms at species level in 46 anaerobic digesters at Danish wastewater treatment plants: A six-year survey on microbial community structure and key drivers
Water Research
2021
Harnessing the plant microbiome to promote the growth of agricultural crops
Microbiological Research
2021
The utility of environmental DNA from sediment and water samples for recovery of observed plant and animal species from four Mojave Desert springs
Environmental DNA
2021
Conducting research on diet–microbiome interactions: A review of current challenges, essential methodological principles, and recommendations for best practice in study design
Journal of Human Nutrition and Dietetics
2021
Bacterial community structure alterations within the colorectal cancer gut microbiome
BMC Microbiology
2021
Deciphering the succession patterns of bacterial community and their correlations with environmental factors and flavor compounds during the fermentation of Zhejiang rosy vinegar
International Journal of Food Microbiology
2021
Exogenous enzymes and probiotics alter digestion kinetics, volatile fatty acid content and microbial interactions in the gut of Nile tilapia
Scientific Reports
2020
Benchmarking the MinION: Evaluating long reads for microbial profiling
Scientific Reports
2020
Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets
Microbiome
2020
Are you what you eat? A highly transient and prey‐influenced gut microbiome in the grey house spider Badumna longinqua
Molecular Ecology
2020
A microbial sea of possibilities: current knowledge and prospects for an improved understanding of the fish microbiome
Reviews in Aquaculture
2020
The Applications of Nanopore Sequencing Technology in Pathogenic Microorganism Detection
Canadian Journal of Infectious Diseases and Medical Microbiology
2020
MetaCurator: A hidden Markov model‐based toolkit for extracting and curating sequences from taxonomically‐informative genetic markers
Methods in Ecology and Evolution
2020
MiDAS 3: An ecosystem-specific reference database, taxonomy and knowledge platform for activated sludge and anaerobic digesters reveals species-level microbiome composition of activated sludge
Water Research
2020
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
IMA Fungus
2020
Depot Medroxyprogesterone Acetate and the Vaginal Microbiome as Modifiers of Tenofovir Diphosphate and Lamivudine Triphosphate Concentrations in the Female Genital Tract of Ugandan Women: Implications for Tenofovir Disoproxil Fumarate/Lamivudine in Preexposure Prophylaxis
Clinical Infectious Diseases
2020
Full Issue PDF
Phytobiomes Journal
2020
Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data
Indian Journal of Medical Research
2020
Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers
npj Biofilms and Microbiomes
2020
Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis
Frontiers in Ecology and Evolution
2020
Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA
Phytobiomes Journal
2020
Randomised, double-blind, placebo-controlled trial of oral probiotic Streptococcus salivarius M18 on head and neck cancer patients post-radiotherapy: a pilot study
Scientific Reports
2020
The Diversity, Composition, and Putative Functions of Gill-Associated Bacteria of Bathymodiolin Mussel and Vesicomyid Clam from Haima Cold Seep, South China Sea
Microorganisms
2020
The Rhodamine Isothiocyanate Analogue as a Quorum Sensing Inhibitor Has the Potential to Control Microbially-Induced Biofouling
Marine Drugs
2020
Falling bacterial communities from the atmosphere
Environmental Microbiome
2020
Candidatus Amarolinea and Candidatus Microthrix Are Mainly Responsible for Filamentous Bulking in Danish Municipal Wastewater Treatment Plants
Frontiers in Microbiology
2020
Plant growth promoting rhizobacteria isolated from halophytes and drought-tolerant plants: genomic characterisation and exploration of phyto-beneficial traits
Scientific Reports
2020
Characterisation of Extracts and Anti-Cancer Activities of Fomitopsis pinicola
Nutrients
2020
Molecular characterization of cultivable bacteria associated with adult Schistocerca gregaria, using 16S rRNA
Journal of Taibah University for Science
2020
The Influences of Bioinformatics Tools and Reference Databases in Analyzing the Human Oral Microbial Community
Genes
2020
Suitability of DNA Sequencing Tools for Identifying Edible Seaweeds Sold in the United States
Journal of Agricultural and Food Chemistry
2020
Nest microbiota and pathogen abundance in sea turtle hatcheries
Fungal Ecology
2020
Method development for cross-study microbiome data mining: Challenges and opportunities
Computational and Structural Biotechnology Journal
2020
Belowground microbial communities respond to water deficit and are shaped by decades of maize hybrid breeding
Environmental Microbiology
2020
Joining Illumina paired-end reads for classifying phylogenetic marker sequences
BMC Bioinformatics
2020
Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax)
mBio
2020
Microbial Culture in Minimal Medium With Oil Favors Enrichment of Biosurfactant Producing Genes
Frontiers in Bioengineering and Biotechnology
2020
Molecular Characterization of Trichoderma spp. Isolates by Internal Transcribed Spacer (ITS) Region Sequencing Technique and its Use as a Biocontrol Agent
The Open Biotechnology Journal
2020
Understanding and interpreting community sequencing measurements of the vaginal microbiome
BJOG: An International Journal of Obstetrics & Gynaecology
2020
Study on the Effect of Huanglian Jiedu Decoction on the Composition of Gut Microflora in SD Rats Based on 16S rRNA Sequencing
Evidence-Based Complementary and Alternative Medicine
2020
Applied Barcoding: The Practicalities of DNA Testing for Herbals
Plants
2020
Ericoid mycorrhizal symbiosis: theoretical background and methods for its comprehensive investigation
Mycorrhiza
2020
Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline
Frontiers in Microbiology
2020
Associations between Diet, the Gut Microbiome, and Short-Chain Fatty Acid Production among Older Caribbean Latino Adults
Journal of the Academy of Nutrition and Dietetics
2020
Sandy soils amended with bentonite induced changes in soil microbiota and fungistasis in maize fields
Applied Soil Ecology
2019
Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary Probiotics
Frontiers in Microbiology
2019
Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory
European Journal of Clinical Microbiology & Infectious Diseases
2019
Reconstruction of the Functional Ecosystem in the High Light, Low Temperature Union Glacier Region, Antarctica
Frontiers in Microbiology
2019
Multi-omics and potential applications in wine production
Current Opinion in Biotechnology
2019
Embracing Ambiguity in the Taxonomic Classification of Microbiome Sequencing Data
Frontiers in Genetics
2019
Macroalga-Derived Alginate Oligosaccharide Alters Intestinal Bacteria of Atlantic Salmon
Frontiers in Microbiology
2019
Metagenomic reconstructions of gut microbial metabolism in weanling pigs
Microbiome
2019
Plant assemblages in atmospheric deposition
Atmospheric Chemistry and Physics
2019
Extracellular Enzyme Activity and Its Implications for Organic Matter Cycling in Northern Chinese Marginal Seas
Frontiers in Microbiology
2019
Metagenomics to Assist in the Diagnosis of Bloodstream Infection
The Journal of Applied Laboratory Medicine
2019
Proto-dolomite formation in microbial consortia dominated by Halomonas strains
Extremophiles
2019
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products
BMC Genomics
2019
Quantitative multi‐locus metabarcoding and waggle dance interpretation reveal honey bee spring foraging patterns in Midwest agroecosystems
Molecular Ecology
2019
Protective effect of Lactobacillus reuteri KUB-AC5 against Salmonella Enteritidis challenge in chickens
Beneficial Microbes
2019
Pollen metabarcoding as a tool for tracking long‐distance insect migrations
Molecular Ecology Resources
2019
Vaginal Microbiota Composition Correlates Between Pap Smear Microscopy and Next Generation Sequencing and Associates to Socioeconomic Status
Scientific Reports
2019
Applying biotechnology for drinking water biofiltration: advancing science and practice
Current Opinion in Biotechnology
2019
The Pedological Context Modulates the Response of Soil Microbial Communities to Agroecological Management
Frontiers in Ecology and Evolution
2019
Species abundance information improves sequence taxonomy classification accuracy
Nature Communications
2019
Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data
Frontiers in Microbiology
2019
Anacapa Toolkit : An environmental DNA toolkit for processing multilocus metabarcode datasets
Methods in Ecology and Evolution
2019
Changes in the Composition of the Gut Microbiota and the Blood Transcriptome in Preterm Infants at Less than 29 Weeks Gestation Diagnosed with Bronchopulmonary Dysplasia
mSystems
2018
A constrained SSU-rRNA phylogeny reveals the unsequenced diversity of photosynthetic Cyanobacteria (Oxyphotobacteria)
BMC Research Notes
2018
A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data
PeerJ
2018
Taxonomy annotation and guide tree errors in 16S rRNA databases
PeerJ
2018
IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences
Microbiome
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