of note: I accidentally put the wrong reference in my slide with the denoising process figure. The correct ref should point to @VascoElbrecht et. al's excellent paper https://t.co/AOcYoSeSzN . Looking to fix this on the slide/video! Apologies to the authors there!
I'd like to be able to produce haplotype networks, preferably using either a Python tool or a UNIX-compatible program. If possible, I'd like to avoid R for this case.
Do you have any suggestions?
Please RT!
(Figures from :
https://t.co/8KAS2MpdGH
https://t.co/t1kzuTzjEv) https://t.co/pGmCwqk9Cr
@smanu_eDNA @alpineedna @iBOLproject yes, haplotypes can give a first idea. But for the "real" connectivity one still needs population genetic markers that include nuclear DNA. But even with current metabarcoding one can detect population genetic patterns: https://t.co/QwUSfkA8PH
Very exciting and promising approach from @VascoElbrecht et al. on characterizing haplotypes from #metabarcoding data:
"Estimating intraspecific #genetic diversity from community DNA metabarcoding data"
#eDNA #JAMP @thePeerJ https://t.co/OH2HNeueKK https://t.co/nKdVd5vBbM