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2024
Environmental DNA reflects spatial distribution of a rare turtle in a lentic wetland assisted colonization site
Environmental DNA
2024
Environmental DNA time series analysis of a temperate stream reveals distinct seasonal community and functional shifts
River Research and Applications
2024
Encyclopedia of Biodiversity
2024
Detailed DNA barcoding of mayflies in a small European country proved how far we are from having comprehensive barcode reference libraries
Molecular Ecology Resources
2023
Molecular ecology meets systematic conservation planning
Trends in Ecology & Evolution
2023
Exploring and validating observations of non‐local species in eDNA samples
Ecology and Evolution
2023
Vertical organization of microbial communities in Salineta hypersaline wetland, Spain
Frontiers in Microbiology
2023
Environmental DNA reflects common haplotypic variation
Environmental DNA
2023
Community metabarcoding reveals the relative role of environmental filtering and spatial processes in metacommunity dynamics of soil microarthropods across a mosaic of montane forests
Molecular Ecology
2023
Abundance estimation with DNA metabarcoding – recent advancements for terrestrial arthropods
Metabarcoding and Metagenomics
2023
Inferring the ecological and evolutionary determinants of community genetic diversity
Molecular Ecology
2023
Metabarcoding reveals high‐resolution biogeographical and metaphylogeographical patterns through marine barriers
Journal of Biogeography
2023
Opportunities and inherent limits of using environmental DNA for population genetics
Environmental DNA
2023
A validated protocol for eDNA-based monitoring of within-species genetic diversity in a pond-breeding amphibian
Scientific Reports
2023
Metabarcoding for biodiversity inventory blind spots: A test case using the beetle fauna of an insular cloud forest
Molecular Ecology
2023
Dissecting biodiversity: assessing the taxonomic, functional and phylogenetic structure of an insect metacommunity in a river network using morphological and metabarcoding data
The European Zoological Journal
2023
Towards a genetic theory of island biogeography: Inferring processes from multidimensional community‐scale data
Global Ecology and Biogeography
2023
Spineless and overlooked: DNA metabarcoding of autonomous reef monitoring structures reveals intra‐ and interspecific genetic diversity in Mediterranean invertebrates
Molecular Ecology Resources
2023
Successful invasions to freshwater systems double with climate warming
Limnology and Oceanography
2023
Environmental DNA metabarcoding read numbers and their variability predict species abundance, but weakly in non‐dominant species
Environmental DNA
2023
Haplotype-level metabarcoding of freshwater macroinvertebrate species: A prospective tool for population genetic analysis
PLOS ONE
2023
Evaluation of genetic diversity in an endangered fish Gnathopogon caerulescens using environmental DNA and its potential use in fish conservation
Environmental DNA
2022
Emerging technologies revolutionise insect ecology and monitoring
Trends in Ecology & Evolution
2022
The applicability of eDNA metabarcoding approaches for sessile benthic surveying in the Kimberley region, north‐western Australia
Environmental DNA
2022
Evaluating bioinformatics pipelines for population‐level inference using environmental DNA
Environmental DNA
2022
Do pseudogenes pose a problem for metabarcoding marine animal communities?
Molecular Ecology Resources
2022
Lack of Statistical Rigor in DNA Barcoding Likely Invalidates the Presence of a True Species' Barcode Gap
Frontiers in Ecology and Evolution
2022
RNA metabarcoding helps reveal zooplankton community response to environmental stressors
Environmental Pollution
2022
DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets
PeerJ
2022
Environmental DNA study on aquatic ecosystem monitoring and management: Recent advances and prospects
Journal of Environmental Management
2022
Seasonal and spatial variability of zooplankton diversity in the Poyang Lake Basin using DNA metabarcoding
Ecology and Evolution
2022
Encyclopedia of Inland Waters
2022
The gender-specific impact of starvation on mitotypes diversity in adults of Drosophila melanogaster
Open Biology
2022
The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation
Molecular Ecology Resources
2022
Dataset complexity impacts both MOTU delimitation and biodiversity estimates in eukaryotic 18S rRNA metabarcoding studies
Environmental DNA
2022
Coming of age for COI metabarcoding of whole organism community DNA: Towards bioinformatic harmonisation
Molecular Ecology Resources
2022
Diet DNA reveals novel African Forest elephant ecology on the grasslands of the Congo Basin
Environmental DNA
2022
Microbial diversity alteration reveals biomarkers of contamination in soil-river-lake continuum
Journal of Hazardous Materials
2022
Implications of taxonomic and numerical resolution on DNA metabarcoding-based inference of benthic macroinvertebrate responses to river restoration
Ecological Indicators
2022
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods
GigaScience
2022
A metabarcoding framework for wild bee assessment in Luxembourg
Journal of Hymenoptera Research
2021
The limited spatial scale of dispersal in soil arthropods revealed with whole‐community haplotype‐level metabarcoding
Molecular Ecology
2021
Testing small‐scale ecological gradients and intraspecific differentiation for hundreds of kelp forest species using haplotypes from metabarcoding
Molecular Ecology
2021
High‐throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally
Ecology and Evolution
2021
Mitochondrial Genetic Diversity, Population Structure and Detection of Antillean and Amazonian Manatees in Colombia: New Areas and New Techniques
Frontiers in Genetics
2021
Field methods to study the spatial root density distribution of individual plants
Plant and Soil
2021
Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets
BMC Bioinformatics
2021
Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis
Molecular Ecology
2021
Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification
Environmental DNA
2021
DNA metabarcoding improves the detection of multiple stressor responses of stream invertebrates to increased salinity, fine sediment deposition and reduced flow velocity
Science of The Total Environment
2021
Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates
Water
2021
Nuclear eDNA estimates population allele frequencies and abundance in experimental mesocosms and field samples
Molecular Ecology
2021
To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography
BMC Bioinformatics
2021
Dispersal limitations and long‐term persistence drive differentiation from haplotypes to communities within a tropical sky‐island: Evidence from community metabarcoding
Molecular Ecology
2021
Debar: A sequence‐by‐sequence denoiser for COI‐5P DNA barcode data
Molecular Ecology Resources
2021
Benthic Diatoms in River Biomonitoring—Present and Future Perspectives within the Water Framework Directive
Water
2021
Seasonal turnover in community composition of stream‐associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding
Environmental DNA
2021
Forensics Meets Ecology – Environmental DNA Offers New Capabilities for Marine Ecosystem and Fisheries Research
Frontiers in Marine Science
2021
Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data
Molecular Ecology Resources
2021
Estimating the genetic diversity of Pacific salmon and trout using multigene eDNA metabarcoding
Molecular Ecology
2021
Opportunities and challenges of macrogenetic studies
Nature Reviews Genetics
2020
Key Questions for Next-Generation Biomonitoring
Frontiers in Environmental Science
2020
Environmental DNA: history of studies, current and perspective applications in fundamental and applied research
Ecological genetics
2020
Macroinvertebrate community diversity and habitat quality relationships along a large river from targeted eDNA metabarcode assays
Environmental DNA
2020
The impact of intragenomic rRNA variation on metabarcoding‐derived diversity estimates: A case study from marine nematodes
Environmental DNA
2020
Humic-acid-driven escape from eye parasites revealed by RNA-seq and target-specific metabarcoding
Parasites & Vectors
2020
From metabarcoding to metaphylogeography: separating the wheat from the chaff
Ecological Applications
2020
Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean
Global Ecology and Biogeography
2020
Identifying error and accurately interpreting environmental DNA metabarcoding results: A case study to detect vertebrates at arid zone waterholes
Molecular Ecology Resources
2020
A practical guide to DNA metabarcoding for entomological ecologists
Ecological Entomology
2020
Idea paper: Elucidation of the long‐term properties of food webs based on the intraspecific genetic diversity of hub species populations
Ecological Research
2020
HACSim: an R package to estimate intraspecific sample sizes for genetic diversity assessment using haplotype accumulation curves
PeerJ Computer Science
2020
Exploring the potential of metabarcoding to disentangle macroinvertebrate community dynamics in intermittent streams
Metabarcoding and Metagenomics
2020
A river runs through it: The causes, consequences, and management of intraspecific diversity in river networks
Evolutionary Applications
2020
Can metabarcoding resolve intraspecific genetic diversity changes to environmental stressors? A test case using river macrozoobenthos
Metabarcoding and Metagenomics
2020
High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances and interactions in spider communities
Development Genes and Evolution
2020
coil: an R package for cytochrome c oxidase I (COI) DNA barcode data cleaning, translation, and error evaluation
Genome
2020
Metabarcoding From Microbes to Mammals: Comprehensive Bioassessment on a Global Scale
Frontiers in Ecology and Evolution
2020
Evaluating intraspecific genetic diversity using environmental DNA and denoising approach: A case study using tank water
Environmental DNA
2020
Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population
Molecular Ecology Resources
2020
Alignment-free classification of COI DNA barcode data with the Python package Alfie
Metabarcoding and Metagenomics
2020
Revealing community assembly through barcoding: Mediterranean butterflies and dispersal variation
Journal of Animal Ecology
2020
Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis
Frontiers in Ecology and Evolution
2019
Validation of COI metabarcoding primers for terrestrial arthropods
PeerJ
2019
Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement
Molecular Ecology Resources
2019
Diatom DNA Metabarcoding for Biomonitoring: Strategies to Avoid Major Taxonomical and Bioinformatical Biases Limiting Molecular Indices Capacities
Frontiers in Ecology and Evolution
2019
Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting
PLOS ONE
2019
Metabarcoding data allow for reliable biomass estimates in the most abundant animals on earth
Metabarcoding and Metagenomics
2019
Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?
Genes
2019
Food Tracking Perspective: DNA Metabarcoding to Identify Plant Composition in Complex and Processed Food Products
Genes
2019
Cobble community DNA as a tool to monitor patterns of biodiversity within kelp forest ecosystems
Molecular Ecology Resources
2019
Properties of Samples With Segregating Polymerase Chain Reaction (PCR) Dropout Mutations Within a Species
Evolutionary Bioinformatics
2019
Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept
mSystems
2019
Metabarcoding a diverse arthropod mock community
Molecular Ecology Resources
2019
One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies
Ecology and Evolution
2019
Invasion genetics from eDNA and thousands of larvae: A targeted metabarcoding assay that distinguishes species and population variation of zebra and quagga mussels
Ecology and Evolution
2018
DNA metabarcoding reveals the complex and hidden responses of chironomids to multiple stressors
Environmental Sciences Europe
2018
Why the COI barcode should be the community DNA metabarcode for the metazoa
Molecular Ecology
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