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2025	The relict plant Tetraena mongolica plantations increase the nutrition and microbial diversity in desert soil Frontiers in Plant Science Yanan Quan, Xiuwen Gan, Shiyun Lu, Xiaodong Shi, Mingsheng Bai, Yin Lin, Yufei Gou, Hong Zhang, Xinyue Zhang, Jiayuan Wei, Tianyu Chang, Jingyu Li, Jianli Liu
2025	Year‐Round Quantification, Structure and Dynamics of Epibacterial Communities From Diverse Macroalgae Reveal a Persistent Core Microbiota and Strong Host Specificities Environmental Microbiology Reports Maéva Brunet, Nolwen Le Duff, Tristan Barbeyron, François Thomas
2025	Key biomarkers associated with nitrogen fixation in rhizosphere soil affect Cd accumulation in Sedum plumbizincicola Earth Critical Zone Nei Wu, Kang Yan, Changyi Wang, Zhaoxin Zhang, Haizhen Wang
2025	Synthetic DNA spike-in standards for cross-domain absolute quantification of microbiomes by rRNA gene amplicon sequencing ISME Communications Dieter M Tourlousse, Yuji Sekiguchi
2025	Artificial Root Exudates Affect Soil Phosphorus Activation in an Acidic Soil: Role of Phosphorus-Solubilizing Bacteria via RNA Sequencing Current Microbiology Long Guo, Chao Wang, Ren Fang Shen
2025	Synthetic spike-in metabarcoding for plant pathogen diagnostics results in precise quantification of copy number within the genus Fusarium ISME Communications Peter Oppenheimer, Francesco Tini, Rebecca Whetten, Imane Laraba, Quentin Read, Briana Whitaker, Martha Vaughan, Giovanni Beccari, Lorenzo Covarelli, Christina Cowger
2025	Absolute quantitative metagenomic analysis reveals unique gut bacteria underlying berberine and metformin’s anti-metabolic disorders effects Microbiology Spectrum Jiaguo Zhan, Bin Cheng, Kangmiao Guo, Xueqing Tao, Xinyan Cai, Zhuoran Li, Zhenhao Tang, Jingke Zhan, Chongming Wu
2025	Anaerobic Storage of Erythromycin Fermentation Residue for Sustainable Management and Antibiotic Resistance Mitigation ACS Sustainable Chemistry & Engineering Jianjun Ren, Chuanyang Xu, Jian Zhang, Xuanhe Chen, Dongmin Yin, Chunyu Li, Taoli Huhe, Dongze Niu
2025	Assessment of absolute abundance in mother-infant gut microbiome using marine-sourced bacterial DNA spike-in and comparison with conventional quantification methods Microbiome Research Reports Shuo Wang, David Healy, Dhrati Patangia, Shona Uniacke-Lowe, Elena Kamilari, Iwona M. Kozak, Bo Yang, Eugene M. Dempsey, Catherine Stanton, R. Paul Ross
2025	Effects of Ridge-Furrow Film Mulching Patterns on Soil Bacterial Diversity in a Continuous Potato Cropping System Agronomy Shujuan Jiao, Yichen Kang, Weina Zhang, Yuhui Liu, Hong Li, Wenlin Li, Shuhao Qin
2025	The Marine Microbial Food Web
2024	Eukaryotic plankton size structure and species composition in the wetland lakes Ecohydrology & Hydrobiology Yuntao Li, Kesai Liu, Jiajun Yu, Jianjun Hou
2024	Enrichment of different taxa of the enigmatic candidate phyla radiation bacteria using a novel picolitre droplet technique ISME Communications DeDe Kwun Wai Man, Syrie M Hermans, Martin Taubert, Sarahi L Garcia, Sundar Hengoju, Kirsten Küsel, Miriam A Rosenbaum
2024	Organic amendments enhance transpiration efficiency of corn plants via changes in soil microbial abundance and leaf hormones Plant and Soil Xiaojuan Wang, Peter Sale, Jennifer L. Wood, Priyanka Reddy, Ashley E. Franks, Gary Clark, Jian Jin, Simone Rochfort, James Hunt, Caixian Tang
2024	The Fecal Redox Potential in Healthy and Diarrheal Pigs and Their Correlation with Microbiota Antioxidants Ni Feng, Rongying Xu, Dongfang Wang, Lian Li, Yong Su, Xiaobo Feng
2024	Revealing novel insights into the enhancement of quality in black tea processing through microbial intervention Food Chemistry: X Ailing Wang, Qingqing Lei, Beibei Zhang, Junhai Wu, Zheyang Fu, Jiangfeng He, Yanbo Wang, Xinying Wu
2024	Soil carbon mineralization decreased in desert steppe by light grazing but not fencing management CATENA Tianqi Zhao, Ton Bisseling, Yuanhe Yang, Mengli Zhao, Bin Zhang, Guodong Han
2024	Considerations for the inclusion of metabarcoding data in the plant protection product risk assessment of the soil microbiome Integrated Environmental Assessment and Management Christopher J. Sweeney, Rishabh Kaushik, Melanie Bottoms
2023	Exploring key physicochemical sediment properties influencing bioleaching of heavy metals Journal of Hazardous Materials Chuncheng Wu, Xinyi Hu, Haizhen Wang, Qi Lin, Chaofeng Shen, Liping Lou
2023	The Diversity of Gut Microbiota at Weaning Is Altered in Prolactin Receptor-Null Mice Nutrients Ivan Luzardo-Ocampo, Ana Ocampo-Ruiz, José Dena-Beltrán, Gonzalo Martínez de la Escalera, Carmen Clapp, Yazmín Macotela
2023	Abundant fungi dominate the complexity of microbial networks in soil of contaminated site: High-precision community analysis by full-length sequencing Science of The Total Environment Kang Yan, Jiahang Zhou, Cong Feng, Suyuan Wang, Bart Haegeman, Weirong Zhang, Jian Chen, Shouqing Zhao, Jiangmin Zhou, Jianming Xu, Haizhen Wang
2023	Deciphering the brewing process of Cantonese-style rice vinegar: Main flavors, key physicochemical factors, and important microorganisms Food Research International Dongdong Sun, Weixin Li, Lixin Luo
2023	Depth-dependent patterns of soil microbial community in the E-waste dismantling area Journal of Hazardous Materials Kang Yan, Qi You, Suyuan Wang, Yiyang Zou, Jian Chen, Jianming Xu, Haizhen Wang
2023	Effects of Long-Term (17 Years) Nitrogen Input on Soil Bacterial Community in Sanjiang Plain: The Largest Marsh Wetland in China Microorganisms Zhenbo Chen, Chi Zhang, Zhihong Liu, Changchun Song, Shuai Xin
2023	Pitfalls in the statistical analysis of microbiome amplicon sequencing data Molecular Ecology Resources Hendriek C Boshuizen, Dennis E te Beest
2023	Effects of paddy field non-grainization consolidation on sustainable eco-functions protection of soil bacterial: Empirical evidence from Zhejiang province, China Frontiers in Environmental Science Ying Liang, Bin Geng
2022	Are short‐read amplicons suitable for the prediction of microbiome functional potential? A critical perspective iMeta Vitor Heidrich, Lukas Beule
2022	A High-Throughput Absolute Abundance Quantification Method for the Characterisation of Daqu Core Fungal Communities Fermentation Hai Du, Jia Sun, Tianci Zhou, Yan Xu
2022	Tea plant–legume intercropping simultaneously improves soil fertility and tea quality by changing Bacillus species composition Horticulture Research Zhi Huang, Chunhong Cui, Yajun Cao, Jinghui Dai, Xiaoyue Cheng, Shaowei Hua, Wentao Wang, Yu Duan, Evangelos Petropoulos, Hui Wang, Lixiang Zhou, Wanping Fang, Zengtao Zhong
2022	Assessment of spike-AMP and qPCR-AMP in soil microbiota quantitative research Soil Biology and Biochemistry Meiling Zhang, Liyu Zhang, Shuyu Huang, Wentao Li, Wei Zhou, Laurent Philippot, Chao Ai
2022	Rapid absolute quantification of pathogens and ARGs by nanopore sequencing Science of The Total Environment Yu Yang, You Che, Lei Liu, Chunxiao Wang, Xiaole Yin, Yu Deng, Chao Yang, Tong Zhang
2022	Soil labile organic carbon indicating seasonal dynamics of soil organic carbon in northeast peatland Ecological Indicators Xue Wang, Lianxi Sheng, Yue Li, Haibo Jiang, Zhuyan Lv, Wei Qi, Wenbo Luo
2022	Relative and Quantitative Rhizosphere Microbiome Profiling Results in Distinct Abundance Patterns Frontiers in Microbiology Hamed Azarbad, Julien Tremblay, Luke D. Bainard, Etienne Yergeau
2022	Linking Bacterial Communities to Optical-Derived Properties of Porewater DOM in Sediments in the Coastal East China Sea Frontiers in Marine Science Minchun Li, Wei Xie, Chuanlun Zhang, Kedong Yin
2022	Advances in Ecological Research
2022	Antibiotic resistance genes and bacterial community distribution patterns in pig farms Folia Microbiologica Hongmei Guo, Chengsen Wang, Lei Ju, Liuting Pan, Zhimin Su, Zhaofeng Sui
2022	Quantitative study on core bacteria producing flavor substances in Huangjiu (Chinese yellow rice wine) LWT Qi Peng, Huajun Zheng, Kai Meng, Hefeng Yu, Guangfa Xie, Yuhao Zhang, Xinyi Yang, Jialing Chen, Zhuoqin Xu, Zichen Lin, Shuangping Liu, Nabil I. Elsheery, Peng Wu, Jianwei Fu
2021	Bacterial community and PAH-degrading genes in paddy soil and rice grain from PAH-contaminated area Applied Soil Ecology Chao Lu, Yang Hong, Emmanuel Stephen Odinga, Juan Liu, Daniel C.W. Tsang, Yanzheng Gao
2021	Current Applications of Absolute Bacterial Quantification in Microbiome Studies and Decision-Making Regarding Different Biological Questions Microorganisms Xiaofan Wang, Samantha Howe, Feilong Deng, Jiangchao Zhao
2021	Relative Abundances of Species or Sequence Variants Can Be Misleading: Soil Fungal Communities as an Example Microorganisms Lukas Beule, Markus Arndt, Petr Karlovsky
2021	Responses of Soil Abiotic Properties and Microbial Community Structure to 25-Year Cucumber Monoculture in Commercial Greenhouses Agriculture Yu-Han Gao, Xiao-Hong Lu, Rong-Jun Guo, Jian-Jun Hao, Zuo-Qing Miao, Li Yang, Shi-Dong Li
2021	Linking rhizospheric diazotrophs to the stimulation of soybean N2 fixation in a Mollisol amended with maize straw Plant and Soil Zhihuang Xie, Zhenhua Yu, Yansheng Li, Guanghua Wang, Caixian Tang, Ulrike Mathesius, Xiaobing Liu, Junjie Liu, Judong Liu, Stephen J. Herbert, Junjiang Wu, Jian Jin
2021	The benefits of biochar: Enhanced cadmium remediation, inhibited precursor production of nitrous oxide and a short-term disturbance on rhizosphere microbial community Environmental Pollution Lijun Hou, Liping Zhang, Xiaotian Chen, Xuewen Li, ZengqiangZhang, Yan Bing Lin
2021	Phospholipid fatty acid (PLFA) analysis as a tool to estimate absolute abundances from compositional 16S rRNA bacterial metabarcoding data Journal of Microbiological Methods Natascha Lewe, Syrie Hermans, Gavin Lear, Laura T. Kelly, Georgia Thomson-Laing, Barbara Weisbrod, Susanna A. Wood, Robert A. Keyzers, Julie R. Deslippe
2021	Soil alkaline phosphatase activity and bacterial phoD gene abundance and diversity under regimes of inorganic fertilizer reduction with straw Journal of Soils and Sediments Yingyan Wang, Rong Huang, Guoxing Xu, Jiacheng Li, Zifang Wang, En Ci, Ming Gao
2021	Root rot-infected Sanqi ginseng rhizosphere harbors dynamically pathogenic microbiotas driven by the shift of phenolic acids Plant and Soil Baoying Wang, Qing Xia, Yunlong Li, Jun Zhao, Shaozhou Yang, Fugang Wei, Xinqi Huang, Jinbo Zhang, Zucong Cai
2021	An Insight Into the Effect of Organic Amendments on the Transpiration Efficiency of Wheat Plant in a Sodic Duplex Soil Frontiers in Plant Science Xiaojuan Wang, Peter Sale, Ashley Franks, Jian Jin, Christian Krohn, Roger Armstrong, Caixian Tang
2021	Molecular Methods for Pathogenic Bacteria Detection and Recent Advances in Wastewater Analysis Water Shuxin Zhang, Xuan Li, Jiangping Wu, Lachlan Coin, Jake O’Brien, Faisal Hai, Guangming Jiang
2021	Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes Annual Review of Biomedical Engineering Patrick A. Leggieri, Yiyi Liu, Madeline Hayes, Bryce Connors, Susanna Seppälä, Michelle A. O'Malley, Ophelia S. Venturelli
2021	The quest for absolute abundance: The use of internal standards for DNA‐based community ecology Molecular Ecology Resources Joshua G. Harrison, W. John Calder, Bryan Shuman, C. Alex Buerkle
2020	Microbial Communities Associated with Sustained Anaerobic Reductive Dechlorination of α-, β-, γ-, and δ-Hexachlorocyclohexane Isomers to Monochlorobenzene and Benzene Environmental Science & Technology Wenjing Qiao, Luz A. Puentes Jácome, Xianjin Tang, Line Lomheim, Minqing Ivy Yang, Sarra Gaspard, Ingrid Regina Avanzi, Jichun Wu, Shujun Ye, Elizabeth A. Edwards
2020	Assessing the intestinal bacterial community of farmed Nile tilapia (Oreochromis niloticus) by high-throughput absolute abundance quantification Aquaculture Zhenbing Wu, Shuyi Wang, Qianqian Zhang, Jingwen Hao, Yaoyao Lin, Jinyong Zhang, Aihua Li
2020	The thermal response of soil microbial methanogenesis decreases in magnitude with changing temperature Nature Communications Hongyang Chen, Ting Zhu, Bo Li, Changming Fang, Ming Nie
2020	Changes in soil microbial community structure during long‐term secondary succession Land Degradation & Development Jin Liu, Xiaoyu Jia, Weiming Yan, Yangquanwei Zhong, Zhouping Shangguan
2020	Diverse dechlorinators and dechlorination genes enriched through amendment of chlorinated natural organic matter fractions Environmental Science: Processes & Impacts Hanna R. Temme, Paige J. Novak
2020	Quantitative Microbial Risk Assessment and Molecular Biology: Paths to Integration Environmental Science & Technology Charles N. Haas
2020	Impact of Terrestrial Input on Deep-Sea Benthic Archaeal Community Structure in South China Sea Sediments Frontiers in Microbiology Dengxun Lai, Brian P. Hedlund, Wei Xie, Jingjing Liu, Tommy J. Phelps, Chuanlun Zhang, Peng Wang
2020	Predictive interactome modeling for precision microbiome engineering Current Opinion in Chemical Engineering Aimee K Kessell, Hugh C McCullough, Jennifer M Auchtung, Hans C Bernstein, Hyun-Seob Song
2020	Assessment of prokaryote to eukaryote ratios in environmental samples by SSU rDNA length polymorphism Antonie van Leeuwenhoek Alexander Guhr, Alfons R. Weig
2020	Exploring the recycling of bioleaching functional bacteria and sulfur substrate using the sulfur-covered biochar particles Environmental Sciences Europe Chuncheng Wu, Mengying Jiang, Zhe Ye, Yuchen Cai, Yutao Shen, Haizhen Wang, Qi Lin, Chaofeng Shen, Baolan Hu, Liping Lou
2020	Partial substitution of chemical fertilizer by organic materials changed the abundance, diversity, and activity of nirS-type denitrifying bacterial communities in a vegetable soil Applied Soil Ecology Rong Huang, Yingyan Wang, Jiang Liu, Jiajia Gao, Yarong Zhang, Jiupai Ni, Deti Xie, Zifang Wang, Ming Gao
2020	Feasibility of bioleaching of heavy metals from sediment with indigenous bacteria using agricultural sulfur soil conditioners Science of The Total Environment Chuncheng Wu, Mengying Jiang, Lichun Hsieh, Yuchen Cai, Yutao Shen, Haizhen Wang, Qi Lin, Chaofeng Shen, Baolan Hu, Liping Lou
2020	Microbiology of municipal solid waste landfills: a review of microbial dynamics and ecological influences in waste bioprocessing Biodegradation Lerato Sekhohola-Dlamini, Memory Tekere
2020	A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities Nature Communications Jacob T. Barlow, Said R. Bogatyrev, Rustem F. Ismagilov
2020	Pollution adaptive responses of root-associated microbiomes induced the promoted but different attenuation of soil residual lindane: Differences between maize and soybean Science of The Total Environment Jiayin Feng, Yanjie Zhu, Jue Shentu, Zhijiang Lu, Yan He, Jianming Xu
2020	Rhizosphere bacterial and fungal communities during the growth of Angelica sinensis seedlings cultivated in an Alpine uncultivated meadow soil PeerJ Zhigang An, Fengxia Guo, Yuan Chen, Gang Bai, Zhengjun Chen
2020	Chinese Liquor Fermentation: Identification of Key Flavor-Producing Lactobacillus spp. by Quantitative Profiling with Indigenous Internal Standards Applied and Environmental Microbiology Rubing Du, Qun Wu, Yan Xu
2019	Community Structure and Abundance of Archaea in a Zostera marina Meadow: A Comparison between Seagrass-Colonized and Bare Sediment Sites Archaea Pengfei Zheng, Chuantao Wang, Xiaoli Zhang, Jun Gong
2019	Spatial variation of sediment bacterial community in an acid mine drainage contaminated area and surrounding river basin Journal of Environmental Management Dongmei Hou, Pan Zhang, Jiachao Zhang, Yaoyu Zhou, Yuan Yang, Qiming Mao, Daniel C.W. Tsang, Avelino Núñez-Delgado, Lin Luo
2019	The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome Microbiome Wencong Shi, Mingcong Li, Guangshan Wei, Renmao Tian, Cuiping Li, Bing Wang, Rongshan Lin, Chunyu Shi, Xiuli Chi, Bo Zhou, Zheng Gao
2018	Use of an improved high-throughput absolute abundance quantification method to characterize soil bacterial community and dynamics Science of The Total Environment Li Yang, Jun Lou, Haizhen Wang, Laosheng Wu, Jianming Xu
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