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Sujuan Dong, Xinghua Li, Qi Liu, Tao Zhu, Aiwei Tian, Nuo Chen, Xiongbing Tu, Liping Ban

Siti Qamariyah Khairunisa, Brian Eka Rachman, Nasronudin, Muhamad Fahmi, Ichda Arini Dinana, Masahiro Ito

Adam Grazzini, Ann M. Cavanaugh

Christoffer Norn, Fábio Oliveira, Ingemar André

Fabricio Barbosa Monteiro Arraes, Diogo Martins-de-Sa, Daniel D. Noriega Vasquez, Bruno Paes Melo, Muhammad Faheem, Leonardo Lima Pepino de Macedo, Carolina Vianna Morgante, Joao Alexandre R. G Barbosa, Roberto Coiti Togawa, Valdeir Junio Vaz Moreira, Etienne G. J. Danchin, Maria Fatima Grossi-de-Sa

Mackenzie M. Johnson, Claus O. Wilke

Federico Scossa, Alisdair R. Fernie

Sergei L Kosakovsky Pond, Art F Y Poon, Ryan Velazquez, Steven Weaver, N Lance Hepler, Ben Murrell, Stephen D Shank, Brittany Rife Magalis, Dave Bouvier, Anton Nekrutenko, Sadie Wisotsky, Stephanie J Spielman, Simon D W Frost, Spencer V Muse

Justin C. Bagley, Simon Uribe-Convers, Mónica M. Carlsen, Nathan Muchhala

Dariya K. Sydykova, Benjamin R. Jack, Stephanie J. Spielman, Claus O. Wilke

Adam J Hockenberry, Michael C Jewett, Luís A N Amaral, Claus O Wilke

Stephanie J Spielman, Sergei L Kosakovsky Pond

Rohan Maddamsetti, Daniel T. Johnson, Stephanie J. Spielman, Katherine L. Petrie, Debora S. Marks, Justin R. Meyer

2025	Comparative genomics uncovers evolutionary drivers of locust migratory adaptation BMC Genomics Sujuan Dong, Xinghua Li, Qi Liu, Tao Zhu, Aiwei Tian, Nuo Chen, Xiongbing Tu, Liping Ban
2025	Designing a multi-epitope vaccine targeting the HIV-1 subtype CRF01_AE in Indonesia Computers in Biology and Medicine Siti Qamariyah Khairunisa, Brian Eka Rachman, Nasronudin, Muhamad Fahmi, Ichda Arini Dinana, Masahiro Ito
2025	Accurate prediction of substitution rates at protein sites with a mutation-selection model Scientific Reports Ingemar André
2024	Fungal microtubule organizing centers are evolutionarily unstable structures Fungal Genetics and Biology Adam Grazzini, Ann M. Cavanaugh
2024	Improved prediction of site‐rates from structure with averaging across homologs Protein Science Christoffer Norn, Fábio Oliveira, Ingemar André
2021	Dissecting protein domain variability in the core RNA interference machinery of five insect orders RNA Biology Fabricio Barbosa Monteiro Arraes, Diogo Martins-de-Sa, Daniel D. Noriega Vasquez, Bruno Paes Melo, Muhammad Faheem, Leonardo Lima Pepino de Macedo, Carolina Vianna Morgante, Joao Alexandre R. G Barbosa, Roberto Coiti Togawa, Valdeir Junio Vaz Moreira, Etienne G. J. Danchin, Maria Fatima Grossi-de-Sa
2020	Site-Specific Amino Acid Distributions Follow a Universal Shape Journal of Molecular Evolution Mackenzie M. Johnson, Claus O. Wilke
2020	The evolution of metabolism: How to test evolutionary hypotheses at the genomic level Computational and Structural Biotechnology Journal Federico Scossa, Alisdair R. Fernie
2020	HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies Molecular Biology and Evolution Sergei L Kosakovsky Pond, Art F Y Poon, Ryan Velazquez, Steven Weaver, N Lance Hepler, Ben Murrell, Stephen D Shank, Brittany Rife Magalis, Dave Bouvier, Anton Nekrutenko, Sadie Wisotsky, Stephanie J Spielman, Simon D W Frost, Spencer V Muse
2020	Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study Molecular Phylogenetics and Evolution Justin C. Bagley, Simon Uribe-Convers, Mónica M. Carlsen, Nathan Muchhala
2018	Measuring evolutionary rates of proteins in a structural context F1000Research Dariya K. Sydykova, Benjamin R. Jack, Stephanie J. Spielman, Claus O. Wilke
2018	Within-Gene Shine–Dalgarno Sequences Are Not Selected for Function Molecular Biology and Evolution Adam J Hockenberry, Michael C Jewett, Luís A N Amaral, Claus O Wilke
2018	Relative Evolutionary Rates in Proteins Are Largely Insensitive to the Substitution Model Molecular Biology and Evolution Stephanie J Spielman, Sergei L Kosakovsky Pond
2018	Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature Evolution Rohan Maddamsetti, Daniel T. Johnson, Stephanie J. Spielman, Katherine L. Petrie, Debora S. Marks, Justin R. Meyer
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