Citation sources

Updated weekly. Details via Crossref
Crossref Scopus Google Scholar
349 232 Search
2025
Atmospheric methane consumption in arid ecosystems acts as a reverse chimney and is accelerated by plant-methanotroph biomes
The ISME Journal
2025
Phylogenomic and Pangenomic Assessment of a Mediterranean Strain of Raphidiopsis raciborskii Extends Knowledge of the Global Distribution and Characteristics of a Potentially Toxigenic Cyanobacterium
Environmental Microbiology Reports
2025
Comprehensive analysis of Enterococcus spp. from two European healthy infant cohorts shows stable genomic traits including antimicrobial resistance (AMR)
Gut Microbes
2025
Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea
Science Advances
2025
Sphingomonas arvum sp. nov.: A promising microbial chassis for high-yield and sustainable zeaxanthin biomanufacturing
Microbiological Research
2025
Multi-omics analysis reveals important role for microbial-derived metabolites from Botryllus schlosseri in metal interactions
mSystems
2025
A chemical radar allows bacteria to detect and kill predators
Cell
2025
Variable inhibition of different Legionella species by antagonistic bacteria
Applied and Environmental Microbiology
2025
The physical biogeography of Fusobacterium nucleatum in health and disease
mBio
2025
Mesoscale eddies shape Prochlorococcus community structure and dynamics in the oligotrophic open ocean
The ISME Journal
2025
Genome analysis reveals diverse novel psychrotolerant Mucilaginibacter species in Arctic tundra soils
ISME Communications
2025
Harnessing genomic insights to identify antimicrobial traits in Bacillus velezensis MJ06 from Korean soybean-fermented Meju
Food Science and Biotechnology
2025
A Novel Methodology for a Comprehensive Analysis of Genomic Sequence-to-Graph Alignment Tools
IEEE Transactions on Computational Biology and Bioinformatics
2025
Prediction of Antibiotic Resistance Genes in Cyanobacterial Strains by Whole Genome Sequencing
Microorganisms
2025
Adaptive pangenomic remodeling in the Azolla cyanobiont amid a transient microbiome
The ISME Journal
2025
A new mesophilic member of the Chloroflexota phylum ‘Ca. Сhloroploca septentrionalis’ from the meromictic lake Bol'shie Khruslomeny separated from the White Sea
FEMS Microbiology Letters
2025
Stepwise genome evolution from a facultative symbiont to an endosymbiont in the N2-fixing diatom-Richelia symbioses
Current Biology
2025
Reference Module in Life Sciences
2025
Genomic diversity and adaptation in Arctic marine bacteria
mBio
2025
Tersicoccus mangrovi sp. nov., a novel actinobacterium from mangrove sediment in Semarang city, Indonesia
International Journal of Systematic and Evolutionary Microbiology
2025
Novel lineages of bacteria with reduced genomes from the gut of farm animals
mSphere
2025
Description of Stieleria mannarensis sp. nov., isolated from a marine sponge, and proposal to include members of the genus Roseiconus in the genus Stieleria
Antonie van Leeuwenhoek
2025
Effect of neutral electrolyzed water on biofilm formed by meat-related Listeria monocytogenes: Intraspecies variability and influence of the growth surface material
International Journal of Food Microbiology
2025
Pseudomonas Phage Lydia and the Evolution of the Mesyanzhinovviridae Family
Viruses
2025
A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages
Animal Microbiome
2025
EasyMetagenome: A user‐friendly and flexible pipeline for shotgun metagenomic analysis in microbiome research
iMeta
2025
Seasonal transcriptomic shifts reveal metabolic flexibility of chemosynthetic symbionts in an upwelling region
mSystems
2025
A Bradyrhizobium isolate from a marine diatom induces nitrogen-fixing nodules in a terrestrial legume
Nature Microbiology
2025
Description and genomic characterization of Mesorhizobium marinum sp. nov., a bacterium isolated from sea sediment
Systematic and Applied Microbiology
2025
Seasonal and spatial transitions in phytoplankton assemblages spanning estuarine to open ocean waters of the tropical Pacific
Limnology and Oceanography
2024
Airway commensal bacteria in cystic fibrosis inhibit the growth of P. aeruginosa via a released metabolite
Microbiological Research
2024
Pangenomic analysis identifies correlations between Akkermansia species and subspecies and human health outcomes
Microbiome Research Reports
2024
Prevalence and diversity of TAL effector-like proteins in fungal endosymbiotic Mycetohabitans spp.
Microbial Genomics
2024
Aurantiacibacter flavus sp. nov. and Aurantiacibacter gilvus sp. nov., isolated from the mudflat of Suaeda japonica colonies
International Journal of Systematic and Evolutionary Microbiology
2024
Mixotrophy in cyanobacteria
Current Opinion in Microbiology
2024
A Novel View on the Taxonomy of Sulfate-Reducing Bacterium ‘Desulfotomaculum salinum’ and a Description of a New Species Desulfofundulus salinus sp. nov.
Microorganisms
2024
The pangenome analysis of the environmental source Salmonella enterica highlights a diverse accessory genome and a distinct serotype clustering
FEMS Microbiology Letters
2024
Adaptive evolution of Sphingopyxis sp. MC4 conferred degradation potential for persistent β- and δ-Hexachlorocyclohexane (HCH) isomers
Journal of Hazardous Materials
2024
Comparative genomics of obligate predatory bacteria belonging to phylum Bdellovibrionota highlights distribution and predicted functions of lineage-specific protein families
mSphere
2024
Similarities between Ixodes ricinus and Ixodes inopinatus genomes and horizontal gene transfer from their endosymbionts
Current Research in Parasitology & Vector-Borne Diseases
2024
Nutritional attributes and microbial metagenomic profile during solid‐state fermentation of soybean meal inoculated with Lactobacillus acidophilus under non‐sterile conditions
Journal of the Science of Food and Agriculture
2024
Modern microbiology: Embracing complexity through integration across scales
Cell
2024
Sulfate-Reducing Bacteria Isolated from an Oil Field in Kazakhstan and a Description of Pseudodesulfovibrio karagichevae sp. nov.
Microorganisms
2024
Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration
Nature Microbiology
2024
Comparative genomics of Fervidobacterium: a new phylogenomic landscape of these wide-spread thermophilic anaerobes
BMC Genomics
2024
Advances of high-throughput sequencing for unraveling biotechnological potential of microalgal-bacterial communities
Journal of Applied Phycology
2024
Genomic Insights into Moderately Thermophilic Methanotrophs of the Genus Methylocaldum
Microorganisms
2024
Tradeoffs between phage resistance and nitrogen fixation drive the evolution of genes essential for cyanobacterial heterocyst functionality
The ISME Journal
2024
A cryptic plasmid is among the most numerous genetic elements in the human gut
Cell
2024
Metagenomics reveals the genetic diversity between sublineages of UCYN-A and their algal host plastids
ISME Communications
2024
Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii
BMC Genomics
2024
Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria
The ISME Journal
2024
Genetic and phenotypic intra-species diversity of alga Tisochrysis lutea reveals original genetic structure and domestication potential
European Journal of Phycology
2024
Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts
PLOS Genetics
2024
Biogeographic distribution of five Antarctic cyanobacteria using large-scale k-mer searching with sourmash branchwater
Frontiers in Microbiology
2024
Nitrogen fixation in the widely distributed marine γ-proteobacterial diazotroph Candidatus Thalassolituus haligoni
Science Advances
2024
Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter
mSystems
2024
Comparison of Genomes, Resistomes, and Antimicrobial Properties of the Three Lactococcus lactis Strains from Fermented Milk and Cereal Products of South Africa and Russia
Applied Biochemistry and Microbiology
2024
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses
mSystems
2024
Prochlorococcus marinus responses to light and oxygen
PLOS ONE
2024
Molecular mechanisms and environmental adaptations of flagellar loss and biofilm growth of Rhodanobacter under environmental stress
The ISME Journal
2024
Comparison of methane yield of a novel strain of Methanothermobacter marburgensis in pure and mixed adapted culture derived from a methanation bubble column bioreactor
Bioresource Technology
2024
Functional insights of novel Bathyarchaeia reveal metabolic versatility in their role in peatlands of the Peruvian Amazon
Microbiology Spectrum
2024
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution
Cell Host & Microbe
2023
Changes in Fatty Acid Profiles and the Formation of Volatile Organic Compounds During Fermentation of Cow’s Milk with Probiotic Lacticaseibacillus paracasei Strains
Applied Biochemistry and Microbiology
2023
Microaerobic degradation of crude oil and long chain alkanes by a new Rhodococcus strain from Gulf of Mexico
World Journal of Microbiology and Biotechnology
2023
Novel integrative elements and genomic plasticity in ocean ecosystems
Cell
2023
A genetic and virulence characterization of Brazilian strains of Mycoplasma hyopneumoniae
Frontiers in Microbiology
2023
Genome mining reveals novel biosynthetic gene clusters in entomopathogenic bacteria
Scientific Reports
2023
Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum
Scientific Reports
2023
Ecological mechanisms and current systems shape the modular structure of the global oceans’ prokaryotic seascape
Nature Communications
2023
Unveiling the early life core microbiome of the sea cucumber Apostichopus japonicus and the unexpected abundance of the growth-promoting Sulfitobacter
Animal Microbiome
2023
Fatty Acid Profiles Change and the Volatile Organic Compounds Formation During the Cow’S Milk Fermentation with Probiotic <i>Lacticaseibacillus paracasei</i> Strains
Прикладная биохимия и микробиология
2023
Biochemical and Genomic Characterization of Two New Strains of Lacticaseibacillus paracasei Isolated from the Traditional Corn-Based Beverage of South Africa, Mahewu, and Their Comparison with Strains Isolated from Kefir Grains
Foods
2023
Species-specific responses of marine bacteria to environmental perturbation
ISME Communications
2023
Regulation of the methanogenesis pathways by hydrogen at transcriptomic level in time
Applied Microbiology and Biotechnology
2023
Genome-resolving metagenomics reveals wild western capercaillies (Tetrao urogallus) as avian hosts for antibiotic-resistance bacteria and their interactions with the gut-virome community
Microbiological Research
2023
New tRNA-targeting transposons that hijack phage and vesicles
Trends in Genetics
2023
Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples
Nature Methods
2023
Ecological divergence of syntopic marine bacterial species is shaped by gene content and expression
The ISME Journal
2023
Metapangenomic investigation provides insight into niche differentiation of methanogenic populations from the subsurface serpentinizing environment, Samail Ophiolite, Oman
Frontiers in Microbiology
2023
Genome-Resolved Metagenomics and Metatranscriptomics Reveal Insights into the Ecology and Metabolism of Anaerobic Microbial Communities in PCB-Contaminated Sediments
Environmental Science & Technology
2023
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities
mSystems
2023
Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial
Pediatric Research
2023
Draft genomes, phylogenomic reconstruction and comparative genome analysis of three Xenorhabdus strains isolated from soil-dwelling nematodes in Kenya
Access Microbiology
2023
A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes
Nature Microbiology
2023
Basin-scale biogeography of Prochlorococcus and SAR11 ecotype replication
The ISME Journal
2023
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
The ISME Journal
2023
Site-specialization of human oral Gemella species
Journal of Oral Microbiology
2023
happi: a hierarchical approach to pangenomics inference
Genome Biology
2023
Genome Analysis and Potential Ecological Functions of Members of the Genus Ensifer from Subsurface Environments and Description of Ensifer oleiphilus sp. nov.
Microorganisms
2023
Small regulatory RNAs are mediators of the Streptococcus mutans SloR regulon
Journal of Bacteriology
2023
Co-diversification of an intestinal Mycoplasma and its salmonid host
The ISME Journal
2023
Thiocillin contributes to the ecological fitness of Bacillus cereus ATCC 14579 during interspecies interactions with Myxococcus xanthus
Frontiers in Microbiology
2023
Global scale phylogeography of functional traits and microdiversity in Prochlorococcus
The ISME Journal
2023
Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
PLOS ONE
2023
Genetic diversity into a novel free-living species of Bradyrhizobium from contaminated freshwater sediment
Frontiers in Microbiology
2023
Site Specialization of Human Oral Veillonella Species
Microbiology Spectrum
2023
Identification of microbial metabolic functional guilds from large genomic datasets
Frontiers in Microbiology
2023
Genome taxonomy of the genus Neptuniibacter and proposal of Neptuniibacter victor sp. nov. isolated from sea cucumber larvae
PLOS ONE
2023
Genome analysis of Pollutimonas subterranea gen. nov., sp. nov. and Pollutimonas nitritireducens sp. nov., isolated from nitrate- and radionuclide-contaminated groundwater, and transfer of several Pusillimonas species into three new genera Allopusillimonas, Neopusillimonas, and Mesopusillimonas
Antonie van Leeuwenhoek
2023
Cobalamin producers and prokaryotic consumers in the Northwest Atlantic
Environmental Microbiology
2023
Sargasso Sea Vibrio bacteria: Underexplored potential pathovars in a perturbed habitat
Water Research
2022
Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196
BMC Genomics
2022
Phylogenomics of a Saccharomyces cerevisiae cocoa strain reveals adaptation to a West African fermented food population
iScience
2022
Genome Streamlining, Proteorhodopsin, and Organic Nitrogen Metabolism in Freshwater Nitrifiers
mBio
2022
Commensal Bacteria in the Cystic Fibrosis Airway Microbiome Reduce P. aeruginosa Induced Inflammation
Frontiers in Cellular and Infection Microbiology
2022
A metagenomic study of the bacteria in snow algae microbiomes
Canadian Journal of Microbiology
2022
The Microbiomes of Humans, Animals, Plants, and the Environment
2022
Sulfur cycling and host-virus interactions in Aquificales-dominated biofilms from Yellowstone’s hottest ecosystems
The ISME Journal
2022
Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species Nesterenkonia haasae
Polish Journal of Microbiology
2022
The In Vitro Replication Cycle of Achromobacter xylosoxidans and Identification of Virulence Genes Associated with Cytotoxicity in Macrophages
Microbiology Spectrum
2022
Methods in Molecular Biology
2022
Taxonomic revision of the genus Amphritea supported by genomic and in silico chemotaxonomic analyses, and the proposal of Aliamphritea gen. nov.
PLOS ONE
2022
Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach
Current Microbiology
2022
Phylogeny and Metabolic Potential of the Candidate Phylum SAR324
Biology
2022
Eco‐phylogenetic analyses reveal divergent evolution of vitaminB12metabolism in the marine bacterial family ‘Psychromonadaceae’
Environmental Microbiology Reports
2022
Diverse Subclade Differentiation Attributed to the Ubiquity of Prochlorococcus High-Light-Adapted Clade II
mBio
2022
Bergey's Manual of Systematics of Archaea and Bacteria
2022
Metagenome-Assembled Genomes of Bacterial Symbionts Associated with Insecticide-Resistant and -Susceptible Individuals of the Glassy-Winged Sharpshooter (Homalodisca vitripennis)
Microbiology Resource Announcements
2022
Revisiting the intrageneric structure of the genus Pseudomonas with complete whole genome sequence information: Insights into diversity and pathogen-related genetic determinants
Infection, Genetics and Evolution
2022
Cobamide Sharing Is Predicted in the Human Skin Microbiome
mSystems
2022
Highly Specialized Carbohydrate Metabolism Capability in Bifidobacterium Strains Associated with Intestinal Barrier Maturation in Early Preterm Infants
mBio
2022
mucG, mucH, and mucI Modulate Production of Mutanocyclin and Reutericyclins in Streptococcus mutans B04Sm5
Journal of Bacteriology
2022
Water microbiome dynamics of Pacific white shrimp Penaeus vannamei infected with Vibrio parahaemolyticus strains responsible for acute hepatopancreatic necrosis disease
Aquaculture
2022
Metaomics unveils the contribution of Alteromonas bacteria to carbon cycling in marine oxygen minimum zones
Frontiers in Marine Science
2022
Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year
Wellcome Open Research
2022
Pangenome Evolution in Environmentally Transmitted Symbionts of Deep-Sea Mussels Is Governed by Vertical Inheritance
Genome Biology and Evolution
2022
Genomic Analyses of Halioticoli Clade Species in Vibrionaceae Reveal Genome Expansion With More Carbohydrate Metabolism Genes During Symbiotic to Planktonic Lifestyle Transition
Frontiers in Marine Science
2022
The Microbiomes of Humans, Animals, Plants, and the Environment
2022
Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year
Wellcome Open Research
2022
Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology
Science Advances
2022
Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens
PeerJ
2022
Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome
Nature Communications
2022
Site‐tropism of streptococci in the oral microbiome
Molecular Oral Microbiology
2022
Whole-Genome Sequencing of Staphylococcus aureus and Staphylococcus haemolyticus Clinical Isolates from Egypt
Microbiology Spectrum
2022
Complete Genome Sequence of Acidithiobacillus ferriphilus GT2, Isolated from Gold Mill Tailings
Microbiology Resource Announcements
2022
Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year
Wellcome Open Research
2022
mOTUpan: a robust Bayesian approach to leverage metagenome-assembled genomes for core-genome estimation
NAR Genomics and Bioinformatics
2022
Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume
Frontiers in Microbiology
2022
Open pangenome of Lactococcus lactis generated by a combination of metagenome-assembled genomes and isolate genomes
Frontiers in Microbiology
2022
Toward quantifying the adaptive role of bacterial pangenomes during environmental perturbations
The ISME Journal
2022
Revealing Genomic Insights of the Unexplored Porcine Pathogen Actinobacillus pleuropneumoniae Using Whole Genome Sequencing
Microbiology Spectrum
2022
Role of Bifidobacterium pseudocatenulatum in Degradation and Consumption of Xylan-Derived Carbohydrates
Applied and Environmental Microbiology
2022
Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga
Environmental Microbiology
2022
Exposure to Trypanosoma parasites induces changes in the microbiome of the Chagas disease vector Rhodnius prolixus
Microbiome
2022
Genomic Characterization of Potential Plant Growth-Promoting Features of Sphingomonas Strains Isolated from the International Space Station
Microbiology Spectrum
2022
Distribution and Genomic Variation of Thermophilic Cyanobacteria in Diverse Microbial Mats at the Upper Temperature Limits of Photosynthesis
mSystems
2022
Characterization and genomic analysis of two novel psychrotolerant Acidithiobacillus ferrooxidans strains from polar and subpolar environments
Frontiers in Microbiology
2022
Using Nanopore Sequencing to Obtain Complete Bacterial Genomes from Saliva Samples
mSystems
2022
Advances in Phytoplankton Ecology
2022
Genomic and transcriptomic dissection of Theionarchaea in marine ecosystem
Science China Life Sciences
2022
Cloacimonadota metabolisms include adaptations in engineered environments that are reflected in the evolutionary history of the phylum
Environmental Microbiology Reports
2022
Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes
Applied and Environmental Microbiology
2022
Acetylenotrophic and Diazotrophic Bradyrhizobium sp. Strain I71 from TCE-Contaminated Soils
Applied and Environmental Microbiology
2022
Global analysis of biosynthetic gene clusters reveals conserved and unique natural products in entomopathogenic nematode-symbiotic bacteria
Nature Chemistry
2022
Evolutionary Divergence of Marinobacter Strains in Cryopeg Brines as Revealed by Pangenomics
Frontiers in Microbiology
2022
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Cell Genomics
2022
Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae
Microorganisms
2021
Circadian Rhythms in Bacteria and Microbiomes
2021
Comparative Genomics of Novel Agrobacterium G3 Strains Isolated From the International Space Station and Description of Agrobacterium tomkonis sp. nov.
Frontiers in Microbiology
2021
Genomic and functional characterization of a mucosal symbiont involved in early-stage colorectal cancer
Cell Host & Microbe
2021
Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
Genome Research
2021
Acidovorax pan-genome reveals specific functional traits for plant beneficial and pathogenic plant-associations
Microbial Genomics
2021
Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces
BMC Genomics
2021
Metabolic Capacity of the Antarctic Cyanobacterium Phormidium pseudopriestleyi That Sustains Oxygenic Photosynthesis in the Presence of Hydrogen Sulfide
Genes
2021
Ecophysiology of the Cosmopolitan OM252 Bacterioplankton ( Gammaproteobacteria )
mSystems
2021
Rapid discovery of novel prophages using biological feature engineering and machine learning
NAR Genomics and Bioinformatics
2021
A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean
mBio
2021
Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages
ISME Communications
2021
Streptomyces sp. M54: an actinobacteria associated with a neotropical social wasp with high potential for antibiotic production
Antonie van Leeuwenhoek
2021
Chlamydia buteonis in birds of prey presented to California wildlife rehabilitation facilities
PLOS ONE
2021
Modeling Ocean Color Niche Selection by Synechococcus Blue‐Green Acclimaters
Journal of Geophysical Research: Oceans
2021
Comparative Genomics Reveals Insights into Induction of Violacein Biosynthesis and Adaptive Evolution in Janthinobacterium
Microbiology Spectrum
2021
Metagenomic analysis reveals global-scale patterns of ocean nutrient limitation
Science
2021
Genomes of Gut Bacteria from Nasonia Wasps Shed Light on Phylosymbiosis and Microbe-Assisted Hybrid Breakdown
mSystems
2021
Subgroup level differences of physiological activities in marine Lokiarchaeota
The ISME Journal
2021
Genomic adaptation of Pseudomonas strains to acidity and antibiotics in hydrothermal vents at Kolumbo submarine volcano, Greece
Scientific Reports
2021
Comparative Genomics of Marine Bacteria from a Historically Defined Plastic Biodegradation Consortium with the Capacity to Biodegrade Polyhydroxyalkanoates
Microorganisms
2021
Putative Novel Effector Genes Revealed by the Genomic Analysis of the Phytopathogenic Fungus Fusarium oxysporum f. sp. physali (Foph) That Infects Cape Gooseberry Plants
Frontiers in Microbiology
2021
Genomic Characterization of Salmonella typhimurium DT104 Strains Associated with Cattle and Beef Products
Pathogens
2021
Toward Personalized Oral Diagnosis: Distinct Microbiome Clusters in Periodontitis Biofilms
Frontiers in Cellular and Infection Microbiology
2021
Genetic Characterization of Salmonella Infantis with Multiple Drug Resistance Profiles Isolated from a Poultry-Farm in Chile
Microorganisms
2021
Strain diversity of plant‐associated Lactiplantibacillus plantarum
Microbial Biotechnology
2021
Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
Microbiome
2021
Evolutionary, genomic, and biogeographic characterization of two novel xenobiotics-degrading strains affiliated with Dechloromonas
Heliyon
2021
Muribaculaceae Genomes Assembled from Metagenomes Suggest Genetic Drivers of Differential Response to Acarbose Treatment in Mice
mSphere
2021
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
Communications Biology
2021
Genomic Characterization of Campylobacter jejuni Adapted to the Guinea Pig (Cavia porcellus) Host
Frontiers in Cellular and Infection Microbiology
2021
Genic Selection Within Prokaryotic Pangenomes
Genome Biology and Evolution
2021
Early-Life Microbial Restitution Reduces Colitis Risk Promoted by Antibiotic-Induced Gut Dysbiosis in Interleukin 10–/– Mice
Gastroenterology
2021
Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms
Current Biology
2021
Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum , a Candidate Beneficial Bacterium from the Human Microbiome
mSystems
2021
Comparative Genomic Analysis and a Novel Set of Missense Mutation of the Leptospira weilii Serogroup Mini From the Urine of Asymptomatic Dogs in Thailand
Frontiers in Microbiology
2021
Challenges in gene-oriented approaches for pangenome content discovery
Briefings in Bioinformatics
2021
Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies
Frontiers in Genetics
2021
Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean
Proceedings of the National Academy of Sciences
2021
Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.
Microorganisms
2021
Integrating pan-genome with metagenome for microbial community profiling
Computational and Structural Biotechnology Journal
2021
Two Archaeal Metagenome-Assembled Genomes from El Tatio Provide New Insights into the Crenarchaeota Phylum
Genes
2021
Bergey's Manual of Systematics of Archaea and Bacteria
2021
Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments
Communications Biology
2021
Methods in Molecular Biology
2021
Global biogeography of chemosynthetic symbionts reveals both localized and globally distributed symbiont groups
Proceedings of the National Academy of Sciences
2021
Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila
mBio
2021
Complete Genomes of Clade G6 Saccharibacteria Suggest a Divergent Ecological Niche and Lifestyle
mSphere
2020
Phytoplankton in theTaraOcean
Annual Review of Marine Science
2020
Pan-genomics: Applications, Challenges, and Future Prospects
2020
Microbial Strategies for Survival in the Glass Sponge Vazella pourtalesii
mSystems
2020
Selection Is a Significant Driver of Gene Gain and Loss in the Pangenome of the Bacterial Genus Sulfurovum in Geographically Distinct Deep-Sea Hydrothermal Vents
mSystems
2020
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
Genome Biology
2020
Vibrio taketomensis sp. nov. by genome taxonomy
Systematic and Applied Microbiology
2020
Genome sequence of segmented filamentous bacteria present in the human intestine
Communications Biology
2020
Genomic adaptation of marine phytoplankton populations regulates phosphate uptake
Limnology and Oceanography
2020
Genomic, metabolic and phenotypic variability shapes ecological differentiation and intraspecies interactions of Alteromonas macleodii
Scientific Reports
2020
Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation
Science China Life Sciences
2020
Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity
Genome Biology
2020
Ecological and functional capabilities of an uncultured Kordia sp.
Systematic and Applied Microbiology
2020
A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index
mBio
2020
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum
PeerJ
2020
Genomic Characteristics of a Novel Species of Ammonia-Oxidizing Archaea from the Jiulong River Estuary
Applied and Environmental Microbiology
2020
Soehngenia longivitae sp. nov., a Fermenting Bacterium Isolated from a Petroleum Reservoir in Azerbaijan, and Emended Description of the Genus Soehngenia
Microorganisms
2020
Testing the Two-Step Model of Plant Root Microbiome Acquisition Under Multiple Plant Species and Soil Sources
Frontiers in Microbiology
2020
The saccharibacterium TM7x elicits differential responses across its host range
The ISME Journal
2020
Enzymatic biosynthesis of B-complex vitamins is supplied by diverse microbiota in the Rhodnius prolixus anterior midgut following Trypanosoma cruzi infection
Computational and Structural Biotechnology Journal
2020
Defining Cyanobacterial Species: Diversity and Description Through Genomics
Critical Reviews in Plant Sciences
2020
To Dereplicate or Not To Dereplicate?
mSphere
2020
Mixotrophic Iron-OxidizingThiomonasIsolates from an Acid Mine Drainage-Affected Creek
Applied and Environmental Microbiology
2020
Traversing the “Omic” landscape of microbial halotolerance for key molecular processes and new insights
Critical Reviews in Microbiology
2020
Reconstruction and in silico analysis of new Marinobacter adhaerens t76_800 with potential for long-chain hydrocarbon bioremediation associated with marine environmental lipases
Marine Genomics
2020
Metabolic diversification of anaerobic methanotrophic archaea in a deep-sea cold seep
Marine Life Science & Technology
2020
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles
Limnology and Oceanography
2020
Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana
Antonie van Leeuwenhoek
2020
Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
Frontiers in Microbiology
2020
Research advances on ecotype and sub-ecotype differentiation of Prochlorococcus and its environmental adaptability
Science China Earth Sciences
2020
Complete Genome Sequence of Lactobacillus plantarum EM, A Putative Probiotic Strain with the Cholesterol-Lowering Effect and Antimicrobial Activity
Current Microbiology
2020
Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere
Antonie van Leeuwenhoek
2020
High‐contiguity genome assembly of the chemosynthetic gammaproteobacterial endosymbiont of the cold seep tubeworm Lamellibrachia barhami
Molecular Ecology Resources
2020
Comparative Genomics Guides Elucidation of Vitamin B12Biosynthesis in Novel Human-AssociatedAkkermansiaStrains
Applied and Environmental Microbiology
2020
Genetic examination of the marine bacterium Pseudoalteromonas luteoviolacea and effects of its metamorphosis‐inducing factors
Environmental Microbiology
2020
Mixotrophy in marine picocyanobacteria: use of organic compounds by Prochlorococcus and Synechococcus
The ISME Journal
2019
Molecular Targets for Coevolutionary Interactions Between Pacific Oyster Larvae and Their Sympatric Vibrios
Frontiers in Microbiology
2019
Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
eLife
2019
Genome-resolved insights into a novelSpiroplasmasymbiont of the Wheat Stem Sawfly (Cephus cinctus)
PeerJ
2019
Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota
Environmental Microbiology Reports
2019
The Wolbachia mobilome in Culex pipiens includes a putative plasmid
Nature Communications
2019
Taxonomic and Metabolic Incongruence in the Ancient Genus Streptomyces
Frontiers in Microbiology
2019
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
Scientific Reports
2019
Marine Synechococcus isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
Environmental Microbiology
2019
Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease
Genome Biology
2019
Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns
Nature Communications
2019
Lysogeny in the Lactic Acid Bacterium Oenococcus oeni Is Responsible for Modified Colony Morphology on Red Grape Juice Agar
Applied and Environmental Microbiology
2019
Comparative genomics of 16Microbacteriumspp. that tolerate multiple heavy metals and antibiotics
PeerJ
2019
Lanthanide-Dependent Methylotrophs of the Family Beijerinckiaceae : Physiological and Genomic Insights
Applied and Environmental Microbiology
2019
Differential expression of the glucose transporter geneglcHin response to glucose and light in marine picocyanobacteria
PeerJ
2019
bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes
Genome Biology
2019
Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota
Nature Microbiology
2019
Red Sea SAR11 and Prochlorococcus Single-Cell Genomes Reflect Globally Distributed Pangenomes
Applied and Environmental Microbiology
2019
Targeted isolation and cultivation of uncultivated bacteria by reverse genomics
Nature Biotechnology
2019
Communities of Niche-Optimized Strains: Small-Genome Organism Consortia in Bioproduction
Trends in Biotechnology
2019
Deep Carbon
2019
Parallel phylogeography of Prochlorococcus and Synechococcus
The ISME Journal
2019
Microbial Community Rearrangements in Power-to-Biomethane Reactors Employing Mesophilic Biogas Digestate
Frontiers in Energy Research
2018
Origin and Evolution of Biodiversity
2018
Emergence of soil bacterial ecotypes along a climate gradient
Environmental Microbiology
2018
Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale
Environmental Microbiology
2018
The Ocean Gene Atlas: exploring the biogeography of plankton genes online
Nucleic Acids Research
2018
MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks
GigaScience
2018
The genome of a novel isolate of Prochlorococcus from the Red Sea contains transcribed genes for compatible solute biosynthesis
FEMS Microbiology Ecology
2018
The genome of an endosymbiotic methanogen is very similar to those of its free‐living relatives
Environmental Microbiology
Additional cited-by details will be shown when available from Crossref