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2024
Population genetic insights into establishment, adaptation, and dispersal of the invasive quagga mussel across perialpine lakes
Evolutionary Applications
2024
Multiple Pleistocene refugia for Arctic Bell‐Heather revealed with genomic analyses of modern and historic plants
Journal of Biogeography
2024
The Effect of Genome Parametrization and SNP Marker Subsetting on Genomic Selection in Autotetraploid Alfalfa
Genes
2024
Genetic diversity, genetic differentiation and demographic history of Cryptomeria (Cupressaceae), a tertiary relict plant in East Asia based on RAD sequencing
European Journal of Forest Research
2024
Genomic SNPs resolve the phylogeny of an ancient amphibian island radiation from the Seychelles
Molecular Phylogenetics and Evolution
2024
Outbreeding reduces survival during metamorphosis in a headwater stream salamander
Molecular Ecology
2024
Beware of the impact of land use legacy on genetic connectivity: A case study of the long-lived perennial Primula veris
Biological Conservation
2024
Complex patterns of genetic population structure in the mouthbrooding marine catfish, Bagre marinus, in the Gulf of Mexico and U.S. Atlantic
Ecology and Evolution
2024
A community‐driven captive‐breeding and reintroduction program maintains genetic diversity in a threatened freshwater fish
Conservation Science and Practice
2024
An empirical DNA-based identification of morphologically similar snappers (Lutjanus campechanus, Lutjanus purpureus) using a versatile bioinformatics workflow for the discovery and analysis of informative single-nucleotide polymorphisms
Frontiers in Marine Science
2024
Genetic structuring and species boundaries in the Atlantic stony coral Favia (Scleractinia, Faviidae)
Zoologica Scripta
2024
Source tracing of Anthonomus grandis captured in areas of the USA where the species had previously been eradicated
Journal of Pest Science
2024
When adaptation is slowed down: Genomic analysis of evolutionary stasis in thermal tolerance during biological invasion in a novel climate
Molecular Ecology
2024
Genome assembly and variant analysis of two Saccharomyces cerevisiae strains isolated from stingless bee pollen
Gene
2024
Genomic resources for the Yellowfin tuna Thunnus albacares
Molecular Biology Reports
2024
Variant calling in polyploids for population and quantitative genetics
Applications in Plant Sciences
2024
A second unveiling: Haplotig masking of the eastern oyster genome improves population‐level inference
Molecular Ecology Resources
2024
Temporal genomics help in deciphering neutral and adaptive patterns in the contemporary evolution of kelp populations
Journal of Evolutionary Biology
2024
Adaptive differentiation on serpentine soil in diploid versus autotetraploid populations of Biscutella laevigata (Brassicaceae)
Oikos
2024
Local adaptive variation in a highly migratory fish: The smooth hammerhead shark Sphyrna zygaena
Ecological Genetics and Genomics
2024
Genomics and conservation: Guidance from training to analyses and applications
Molecular Ecology Resources
2024
New linkage maps for the Cupressaceae species Chamaecyparis obtusa and Thujopsis dolabrata var. hondae and comparison with the linkage map of Cryptomeria japonica
Journal of Forest Research
2024
Artifactual Orthologs and the Need for Diligent Data Exploration in Complex Phylogenomic Datasets: A Museomic Case Study from the Andean Flora
Systematic Biology
2024
Epigenetic age estimation in a long-lived, deepwater scorpionfish: insights into epigenetic clock development
Canadian Journal of Fisheries and Aquatic Sciences
2024
Common‐garden study of introgression at loci associated with traits adaptive to coastal environment from Quercus dentata into Quercus mongolica var. crispula
Plant Species Biology
2024
Elucidation of novel SNPs affecting immune response to classical swine fever vaccination in pigs using immunogenomics approach
Veterinary Research Communications
2024
Consequences of domestication in eastern oyster: Insights from whole genomic analyses
Evolutionary Applications
2023
Deep phylogeographic splits and limited mixing by sea surface currents govern genetic population structure in the mangrove genus Lumnitzera (Combretaceae) across the Indonesian Archipelago
Journal of Systematics and Evolution
2023
Development and Evaluation of High-Density SNP Arrays for the Eastern Oyster Crassostrea virginica
Marine Biotechnology
2023
Selection on standing genetic variation mediates convergent evolution in extremophile fish
Molecular Ecology
2023
Environmental selection, rather than neutral processes, best explain regional patterns of diversity in a tropical rainforest fish
Heredity
2023
Genomic prediction and allele mining of agronomic and morphological traits in pea (Pisum sativum) germplasm collections
Frontiers in Plant Science
2023
Exceptional population genomic homogeneity in the black brittle star Ophiocomina nigra (Ophiuroidea, Echinodermata) along the Atlantic-Mediterranean coast
Scientific Reports
2023
Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass
Proceedings of the National Academy of Sciences
2023
Estimating microhaplotype allele frequencies from low-coverage or pooled sequencing data
BMC Bioinformatics
2023
Recent evolution of flowering time across multiple European plant species correlates with changes in aridity
Oecologia
2023
Comparing modeling methods of genomic prediction for growth traits of a tropical timber species, Shorea macrophylla
Frontiers in Plant Science
2023
Optimizing ddRAD sequencing for population genomic studies with ddgRADer
Molecular Ecology Resources
2023
Excessive and asymmetrical removal of heterozygous sites by maxSH biases downstream population genetic inference: Implications for hybridization between two primroses
Journal of Systematics and Evolution
2023
Floral scent divergence across an elevational hybrid zone with varying pollinators
Oecologia
2023
Genetic consequence of widespread plantations of Cryptomeria japonica var. sinensis in Southern China: implications for afforestation strategies under climate change
Tree Genetics & Genomes
2023
Rapid survey of de novo mutations in naturally growing tree species following the March 2011 disaster in Fukushima: The effect of low-dose-rate radiation
Environment International
2023
Spatial and temporal patterns in the population genomics of the European cockchafer Melolontha melolontha in the Alpine region
Evolutionary Applications
2023
Genotyping‐by‐sequencing for biogeography
Journal of Biogeography
2023
Genetic structure and relatedness of brown trout (Salmo trutta) populations in the drainage basin of the Ölfusá river, South-Western Iceland
PeerJ
2023
Genetic population structure of the precious coral Corallium japonicum in the Northwest Pacific
Frontiers in Marine Science
2023
New Papiliotrema laurentii UFV-1 strains with improved acetic acid tolerance selected by adaptive laboratory evolution
Fungal Genetics and Biology
2023
Reduced representation approaches produce similar results to whole genome sequencing for some common phylogeographic analyses
PLOS ONE
2023
Evaluating cost-effective genotyping strategies for genomic selection in oysters
Aquaculture
2023
GRAS-Di SNP-based molecular characterization and fingerprinting of a Turkish Corylus avellana core set provide insights into the cultivation and breeding of hazelnut in Turkey
Molecular Genetics and Genomics
2023
Bioinformatics approaches and big data analytics opportunities in improving fisheries and aquaculture
International Journal of Biological Macromolecules
2023
Stronger evidence for genetic ancestry than environmental conditions in shaping the evolution of a complex signalling trait during biological invasion
Molecular Ecology
2023
A Comparison of Non-Destructive Visceral Swab and Tissue Biopsy Sampling Methods for Genotyping-by-Sequencing in the Freshwater Mussel Fusconaia askewi
Genes
2023
Genomic evidence indicates small island-resident populations and sex-biased behaviors of Hawaiian reef Manta Rays
BMC Ecology and Evolution
2023
Signals of differential introgression in the genome of natural hybrids of Caribbean anoles
Molecular Ecology
2023
White Lupin Drought Tolerance: Genetic Variation, Trait Genetic Architecture, and Genome-Enabled Prediction
International Journal of Molecular Sciences
2023
The use of pinned specimens helps uncover patterns of genetic differentiation and signatures of selection in a wild pollinator
Global Ecology and Conservation
2023
Genomic Prediction of Tree Height, Wood Stiffness, and Male Flower Quantity Traits across Two Generations in Selected Individuals of Cryptomeria japonica D. Don (Japanese Cedar)
Forests
2023
Climate-driven past and present interspecies gene flow may have contributed to shape microscale adaptation capacity in Tillandsia lomas in hyperarid south American desert systems
Global and Planetary Change
2023
Genomic Divergence and the Evolution of Ecotypes in Bottlenose Dolphins (Genus Tursiops)
Genome Biology and Evolution
2023
Weak Genetic Isolation and Putative Phenotypic Selection in the Wild Carnation Dianthus virgineus (Caryophyllaceae)
Biology
2023
Limited evidence for extensive genetic differentiation between X and Y chromosomes in Hybognathus amarus (Cypriniformes: Leuciscidae)
Journal of Heredity
2023
Population structure and adaptive differentiation in the sea cucumber Apostichopus californicus and implications for spatial resource management
PLOS ONE
2023
White Lupin Adaptation to Moderately Calcareous Soils: Phenotypic Variation and Genome-Enabled Prediction
Plants
2023
Genetic resources of macroalgae: Development of an efficient method using microsatellite markers in non-model organisms
Algal Research
2023
Genomic assessment of larval odyssey: self‐recruitment and biased settlement in the Hawaiian surgeonfish Acanthurus triostegus sandvicensis
Journal of Fish Biology
2023
Identification of quantitative trait loci controlling soybean seed protein and oil content
PLOS ONE
2023
Philopatry influences the genetic population structure of the blacktip shark (Carcharhinus limbatus) at multiple spatial scales
Molecular Ecology
2023
Weak range-wide population structure in the blackfin tuna (Thunnus atlanticus) revealed by analysis of genome-wide SNPs
ICES Journal of Marine Science
2023
Divergent mechanisms of reduced growth performance in Betula ermanii saplings from high-altitude and low-latitude range edges
Heredity
2023
Large effective size as determinant of population persistence in Anostraca (Crustacea: Branchiopoda)
Conservation Genetics
2023
Rapid introgression of non‐native alleles following hybridization between a native Anolis lizard species and a cryptic invader across an urban landscape
Molecular Ecology
2023
Responses of population structure and genomic diversity to climate change and fishing pressure in a pelagic fish
Global Change Biology
2023
A review of genomics methods and bioinformatics tools for the analysis of close-kin mark-recapture
Frontiers in Marine Science
2023
Characterization of a sex-determining locus and development of early molecular assays in Telfairia occidentalisHook. F., a dioecious cucurbit
Genetic Resources and Crop Evolution
2022
Temperature-associated selection linked to putative chromosomal inversions in king scallop ( Pecten maximus )
Proceedings of the Royal Society B: Biological Sciences
2022
Alfalfa genomic selection for different stress‐prone growing regions
The Plant Genome
2022
Genome-wide insights into adaptive hybridisation across the Schistosoma haematobium group in West and Central Africa
PLOS Neglected Tropical Diseases
2022
Massive genome inversion drives coexistence of divergent morphs in common quails
Current Biology
2022
Phylogenomics of Palythoa (Hexacorallia: Zoantharia): probing species boundaries in a globally distributed genus
Coral Reefs
2022
Genomic analysis of red snapper, Lutjanus campechanus, population structure in the U.S. Atlantic and Gulf of Mexico
ICES Journal of Marine Science
2022
Reduced representation sequencing to understand the evolutionary history of Torrey pine (Pinus torreyana parry) with implications for rare species conservation
Molecular Ecology
2022
Conservation genomics and systematics of a near‐extinct island radiation
Molecular Ecology
2022
Genotyping‐by‐sequencing analysis of Orobanche crenata populations in Algeria reveals genetic differentiation
Ecology and Evolution
2022
Effects of spawning success and rearing-environment on genome-wide variation of red drum in a large stock-enhancement program
Aquaculture
2022
Genetic assimilation and the evolution of direction of genital asymmetry in anablepid fishes
Proceedings of the Royal Society B: Biological Sciences
2022
Hybridization fuelled diversification in Spialia butterflies
Molecular Ecology
2022
Genome-Wide Association Mapping of Virulence Genes in Wheat Karnal Bunt Fungus Tilletia indica Using Double Digest Restriction-Site Associated DNA-Genotyping by Sequencing Approach
Frontiers in Microbiology
2022
Genome‐wide analysis of natural and restored eastern oyster populations reveals local adaptation and positive impacts of planting frequency and broodstock number
Evolutionary Applications
2022
Haploid gynogens facilitate disomic marker development in paleotetraploid sturgeons
Molecular Ecology Resources
2022
Species' attributes predict the relative magnitude of ecological and genetic recovery following mass mortality
Molecular Ecology
2022
The RadOrgMiner pipeline: Automated genotyping of organellar loci from RADseq data
Methods in Ecology and Evolution
2022
Divergence amid recurring gene flow: complex demographic histories for two North American pine species (Pinus pungens and P. rigida) fit growing expectations among forest trees
Tree Genetics & Genomes
2022
The genome of the Paleogene relic treeBretschneidera sinensis: insights into trade-offs in gene family evolution, demographic history, and adaptive SNPs
DNA Research
2022
snpfiltr: An R package for interactive and reproducible SNP filtering
Molecular Ecology Resources
2022
Climate differently influences the genomic patterns of two sympatric marine fish species
Journal of Animal Ecology
2022
Signatures of selection underpinning rapid coral adaptation to the world’s warmest reefs
Science Advances
2022
Minor Genetic Consequences of a Major Mass Mortality: Short-Term Effects in Pisaster ochraceus
The Biological Bulletin
2022
Patterns of genomic and allochronic strain divergence in the fall armyworm, Spodoptera frugiperda (J.E. Smith)
Ecology and Evolution
2022
Drainage reversal with no lineage expansion, a case of competitive exclusion? The genetics ofGalaxias maculatusin two connected trans-Andean systems
Biological Journal of the Linnean Society
2022
Genome-wide analysis of acute low salinity tolerance in the eastern oysterCrassostrea virginicaand potential of genomic selection for trait improvement
G3 Genes|Genomes|Genetics
2022
Novel genetic sex markers reveal unexpected lack of, and similar susceptibility to, sex reversal in free‐living common toads in both natural and anthropogenic habitats
Molecular Ecology
2022
Seascape genomics of common dolphins (Delphinus delphis) reveals adaptive diversity linked to regional and local oceanography
BMC Ecology and Evolution
2022
Evolution of thermal physiology alters the projected range of threespine stickleback under climate change
Molecular Ecology
2022
Genome-wide association study reveals white lupin candidate gene involved in anthracnose resistance
Theoretical and Applied Genetics
2022
Genetic and Phenotypic Characteristics of the Salmo trutta Complex in Italy
Applied Sciences
2022
Genotyping by Sequencing for Crop Improvement
2022
Music of metagenomics—a review of its applications, analysis pipeline, and associated tools
Functional & Integrative Genomics
2022
Chromosome-scale genome assembly of the brown anole (Anolis sagrei), an emerging model species
Communications Biology
2022
The evolutionary network of whiptail lizards reveals predictable outcomes of hybridization
Science
2022
Merging genotyping-by-sequencing data from two ex situ collections provides insights on the pea evolutionary history
Horticulture Research
2022
Genomic Hatchery Introgression in Brown Trout (Salmo trutta L.): Development of a Diagnostic SNP Panel for Monitoring the Impacted Mediterranean Rivers
Genes
2022
Longitudinal monitoring of neutral and adaptive genomic diversity in a reintroduction
Conservation Biology
2022
Assessing the performance of historical skins and bones for museomics using wolf specimens as a case study
Frontiers in Ecology and Evolution
2022
Population genomics of Monadenia (Gastropoda: Stylommatophora: Xanthonychidae) land snails reveals structuring but gene-flow across distinct species and morphotypes
Conservation Genetics
2022
Seascape genomics of coastal bottlenose dolphins along strong gradients of temperature and salinity
Molecular Ecology
2022
Genetic differentiation of a critically endangered population of the limpet Patella candei candei d’Orbigny, 1840, in the Canary Islands
Conservation Genetics
2022
How challenging RADseq data turned out to favor coalescent-based species tree inference. A case study in Aichryson (Crassulaceae)
Molecular Phylogenetics and Evolution
2022
Evolution during seed production for ecological restoration? A molecular analysis of 19 species finds only minor genomic changes
Journal of Applied Ecology
2022
Novel epigenetic age estimation in wild-caught Gulf of Mexico reef fishes
Canadian Journal of Fisheries and Aquatic Sciences
2022
Pea Grain Protein Content Across Italian Environments: Genetic Relationship With Grain Yield, and Opportunities for Genome-Enabled Selection for Protein Yield
Frontiers in Plant Science
2022
Genetic decline and recovery of a demographically rebuilt fishery species
Molecular Ecology
2022
A polygenic architecture with habitat‐dependent effects underlies ecological differentiation in Silene
New Phytologist
2022
Genetic recruitment patterns are patchy and spatiotemporally unpredictable in a deep-water snapper (Lutjanus vivanus) sampled in fished and protected areas of western Puerto Rico
Conservation Genetics
2022
Environmentally Associated Variation in Dispersal Distance Affects Inbreeding Risk in a Stream Salamander
The American Naturalist
2022
Genomic assessment of an endemic Hawaiian surgeonfish, Acanthurus triostegus sandvicensis, reveals high levels of connectivity and fine-scale population structure
Coral Reefs
2022
Hexabothriidae and Monocotylidae (Monogenoidea) from the gills of neonate hammerhead sharks (Sphyrnidae) Sphyrna gilberti, Sphyrna lewini and their hybrids from the western North Atlantic Ocean
Parasitology
2022
Neither connectivity nor genetic diversity matter in the conservation of a rare fern and a moss on insular erratic boulders
Conservation Genetics
2022
Riverscape Genomics Clarifies Neutral and Adaptive Evolution in an Amazonian Characin Fish (Triportheus albus)
Frontiers in Ecology and Evolution
2022
Palau’s warmest reefs harbor thermally tolerant corals that thrive across different habitats
Communications Biology
2022
Genetic Variants Associated with Long-Terminal Repeats Can Diagnostically Classify Cannabis Varieties
International Journal of Molecular Sciences
2021
A Matter of Scale: Population Genomic Structure and Connectivity of Fisheries At-Risk Common Dolphins (Delphinus delphis) From Australasia
Frontiers in Marine Science
2021
Hierarchical genetic structure and implications for conservation of the world’s largest salmonid, Hucho taimen
Scientific Reports
2021
Genomic Evidence for Speciation with Gene Flow in Broadcast Spawning Marine Invertebrates
Molecular Biology and Evolution
2021
Genetic mechanisms and correlational selection structure trait variation in a coral snake mimic
Proceedings of the Royal Society B: Biological Sciences
2021
Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population
Evolution
2021
Population genomics and phylogeography of the boll weevil, Anthonomus grandis Boheman (Coleoptera: Curculionidae), in the United States, northern Mexico, and Argentina
Evolutionary Applications
2021
A New Diploid Parthenogenetic Whiptail Lizard from Sonora, Mexico, Is the “Missing Link” in the Evolutionary Transition to Polyploidy
The American Naturalist
2021
Genetic Diversity and Population Differentiation of Kashgarian Loach (Triplophysa yarkandensis) in Xinjiang Tarim River Basin
Biology
2021
Quantitative trait locus analysis of parasitoid counteradaptation to symbiont-conferred resistance
Heredity
2021
Introgression is widespread in the radiation of carnivorous Nepenthes pitcher plants
Molecular Phylogenetics and Evolution
2021
Genetic structure in Louisiana Iris species reveals patterns of recent and historical admixture
American Journal of Botany
2021
Quantifying dispersal variability among nearshore marine populations
Molecular Ecology
2021
Chromosomal-level assembly of the Leptodermis oblonga (Rubiaceae) genome and its phylogenetic implications
Genomics
2021
Simulation with RADinitio improves RADseq experimental design and sheds light on sources of missing data
Molecular Ecology Resources
2021
Novel real-time PCR based assays for differentiating fall armyworm strains using four single nucleotide polymorphisms
PeerJ
2021
Genomic Analyses of Phenotypic Differences Between Native and Invasive Populations of Diffuse Knapweed (Centaurea diffusa)
Frontiers in Ecology and Evolution
2021
Enhancing oleic acid content in two commercially released peanut varieties through marker‐assisted backcross breeding
Crop Science
2021
High genomic diversity maintained by populations of Carex scirpoidea subsp. convoluta, a paraphyletic Great Lakes ecotype
Conservation Genetics
2021
Genomic Evidence for Rare Hybridization and Large Demographic Changes in the Evolutionary Histories of Four North American Dove Species
Animals
2021
Highly Replicated Evolution of Parapatric Ecotypes
Molecular Biology and Evolution
2021
Niche specificity influences gene flow across fine‐scale habitat mosaics in Succulent Karoo plants
Molecular Ecology
2021
The sardine run in southeastern Africa is a mass migration into an ecological trap
Science Advances
2021
Estuary‐Level Genomic Variation Confirms Demographic and Life History Differences among Black Drum Populations in Texas
North American Journal of Fisheries Management
2021
Low impact of different SNP panels from two building-loci pipelines on RAD-Seq population genomic metrics: case study on five diverse aquatic species
BMC Genomics
2021
Intraspecific niche partition without speciation: individual level web polymorphism within a single island spider population
Proceedings of the Royal Society B: Biological Sciences
2021
Geographic patterns of genomic variation in the threatened Salado salamander, Eurycea chisholmensis
Conservation Genetics
2021
Species ecology explains the spatial components of genetic diversity in tropical reef fishes
Proceedings of the Royal Society B: Biological Sciences
2021
Determining the life history strategy of the cryptobenthic reef gobies Coryphopterus hyalinus and C. personatus
Marine Ecology Progress Series
2021
Comparative Analysis of SNP Discovery and Genotyping in Fagus sylvatica L. and Quercus robur L. Using RADseq, GBS, and ddRAD Methods
Forests
2021
Removing the bad apples: A simple bioinformatic method to improve loci‐recovery in de novo RADseq data for non‐model organisms
Methods in Ecology and Evolution
2021
Effective double‐digest RAD sequencing and genotyping despite large genome size
Molecular Ecology Resources
2021
Global connections with some genomic differentiation occur between Indo‐Pacific and Atlantic Ocean wahoo, a large circumtropical pelagic fish
Journal of Biogeography
2021
Distribution and relative abundance of scalloped (Sphyrna lewini) and Carolina (S. gilberti) hammerheads in the western North Atlantic Ocean
Fisheries Research
2021
Type and intensity of surrounding human land use, not local environment, shape genetic structure of a native grassland plant
Molecular Ecology
2021
Drainage basins serve as multiple glacial refugia for alpine habitats in the Sierra Nevada Mountains, California
Molecular Ecology
2021
Testing for evolutionary change in restoration: A genomic comparison between ex situ, native, and commercial seed sources of Helianthus maximiliani
Evolutionary Applications
2021
Recent hybrid speciation at the origin of the narrow endemicPulmonaria helvetica
Annals of Botany
2021
Adaptive evolution in a conifer hybrid zone is driven by a mosaic of recently introgressed and background genetic variants
Communications Biology
2021
The effects of climate and demographic history in shaping genomic variation across populations of the Desert Horned Lizard (Phrynosoma platyrhinos)
Molecular Ecology
2021
Genetic and phenotypic variation exhibit both predictable and stochastic patterns across an intertidal fish metapopulation
Molecular Ecology
2021
Pea Breeding for Intercropping With Cereals: Variation for Competitive Ability and Associated Traits, and Assessment of Phenotypic and Genomic Selection Strategies
Frontiers in Plant Science
2021
An introgression breakthrough left by an anthropogenic contact between two ascidians
Molecular Ecology
2021
Andean uplift, drainage basin formation, and the evolution of plants living in fast‐flowing aquatic ecosystems in northern South America
New Phytologist
2021
Phylogenomics of Porites from the Arabian Peninsula
Molecular Phylogenetics and Evolution
2021
Evolutionary genomics of endangered Hawaiian tree snails (Achatinellidae: Achatinellinae) for conservation of adaptive capacity
PeerJ
2021
Disentangling complex genomic signals to understand population structure of an exploited, estuarine‐dependent flatfish
Ecology and Evolution
2021
Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica)
Philosophical Transactions of the Royal Society B: Biological Sciences
2021
Complex introgression among three diverged largemouth bass lineages
Evolutionary Applications
2021
Population genomics and conservation of Gila Trout (Oncorhynchus gilae)
Conservation Genetics
2021
Compendium of Plant Genomes
2021
Changes in selection pressure can facilitate hybridization during biological invasion in a Cuban lizard
Proceedings of the National Academy of Sciences
2021
Genotype–Environment mismatch of kelp forests under climate change
Molecular Ecology
2020
Complementarity and discriminatory power of genotype and otolith shape in describing the fine-scale population structure of an exploited fish, the common sole of the Eastern English Channel
PLOS ONE
2020
Species complex diversification by host plant use in an herbivorous insect: The source of Puerto Rican cactus mealybug pest and implications for biological control
Ecology and Evolution
2020
Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States
PeerJ
2020
Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific
Coral Reefs
2020
Genome‐wide markers reveal temporal instability of local population genetic structure in the cotton fleahopper, Pseudatomoscelis seriatus (Hemiptera: Miridae)
Pest Management Science
2020
Natural tags identify nursery origin of a coastal elasmobranch Carcharhinus leucas
Journal of Applied Ecology
2020
Potential of Genome-Wide Association Studies and Genomic Selection to Improve Productivity and Quality of Commercial Timber Species in Tropical Rainforest, a Case Study of Shorea platyclados
Forests
2020
Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides)
Ecology and Evolution
2020
Fine-scale genetic structure in Lahille’s bottlenose dolphins (Tursiops truncatus gephyreus) is associated with social structure and feeding ecology
Marine Biology
2020
Accuracy of de novo assembly of DNA sequences from double‐digest libraries varies substantially among software
Molecular Ecology Resources
2020
Cichla cataractae (Cichliformes: Cichlidae), new species of peacock bass from the Essequibo Basin, Guyana and Venezuela
Proceedings of the Academy of Natural Sciences of Philadelphia
2020
Environment‐dependent introgression from Quercus dentata to a coastal ecotype of Quercus mongolica var. crispula in northern Japan
New Phytologist
2020
Recent and rapid anthropogenic habitat fragmentation increases extinction risk for freshwater biodiversity
Evolutionary Applications
2020
Assessment of ethanol tolerance of Kluyveromyces marxianus CCT 7735 selected by adaptive laboratory evolution
Applied Microbiology and Biotechnology
2020
Fine‐scale structure among mesophotic populations of the great star coral Montastraea cavernosa revealed by SNP genotyping
Ecology and Evolution
2020
Evaluating the effect of reference genome divergence on the analysis of empirical RADseq datasets
Ecology and Evolution
2020
High-Density SNP-Based Association Mapping of Seed Traits in Fenugreek Reveals Homology with Clover
Genes
2020
The direction of genital asymmetry is expressed stochastically in internally fertilizing anablepid fishes
Proceedings of the Royal Society B: Biological Sciences
2020
Population Genomic Analyses of the Sea Urchin Echinometra sp. EZ across an Extreme Environmental Gradient
Genome Biology and Evolution
2020
Genomics versus mtDNA for resolving stock structure in the silky shark (Carcharhinus falciformis)
PeerJ
2020
Population genetics of freshwater pearl mussel (Margaritifera margaritifera) in central Massachusetts and implications for conservation
Aquatic Conservation: Marine and Freshwater Ecosystems
2020
Novel hybrid finds a peri-urban niche: Allen’s Hummingbirds in southern California
Conservation Genetics
2020
Genomic and phenotypic consequences of two independent secondary contact zones between allopatric lineages of the anadromous ice goby Leucopsarion petersii
Heredity
2020
Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland
Molecular Ecology Resources
2020
Cryptic lineages respond differently to coral bleaching
Molecular Ecology
2020
Genomic Characterization of Coho Salmon Spawning Populations from the Hood Canal
Transactions of the American Fisheries Society
2020
Using genetic markers to identify the origin of illegally traded agarwood-producing Aquilaria sinensis trees
Global Ecology and Conservation
2020
Tracing the footprints of a moving hybrid zone under a demographic history of speciation with gene flow
Evolutionary Applications
2020
Genetic diversity and structure of circumtropical almaco jack, Seriola rivoliana: tool for conservation and management
Journal of Fish Biology
2020
Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae)
Scientific Reports
2020
Pronghorn population genomics show connectivity in the core of their range
Journal of Mammalogy
2020
Development and characterization of genomic resources for a non-model marine teleost, the red snapper (Lutjanus campechanus, Lutjanidae): Construction of a high-density linkage map, anchoring of genome contigs and comparative genomic analysis
PLOS ONE
2020
Panmixia across elevation in thermally sensitive Andean dung beetles
Ecology and Evolution
2020
Disentangling the effects of geographic peripherality and habitat suitability on neutral and adaptive genetic variation in Swiss stone pine
Molecular Ecology
2020
Unexpectedly high genetic diversity in a rare and endangered seabird in the Hawaiian Archipelago
PeerJ
2020
Identification of sex-linked markers in the sexually cryptic coco de mer: are males and females produced in equal proportions?
AoB PLANTS
2020
Characterization of 90 function-related SNP markers in the endangered hardwood tree Erythrophleum fordii
Conservation Genetics Resources
2020
Evidence for population genetic structure in two exploited Mekong River fishes across a natural riverine barrier
Journal of Fish Biology
2020
Assessing functions of movement in a Great Plains endemic fish
Environmental Biology of Fishes
2020
Population Genetic Diversity and Structure of Ancient Tree Populations of Cryptomeria japonica var. sinensis Based on RAD-seq Data
Forests
2020
Evolution of putative barrier loci at an intermediate stage of speciation with gene flow in campions (Silene)
Molecular Ecology
2020
Reconstructing the Evolutionary History of Chromosomal Races on Islands: A Genome-Wide Analysis of Natural House Mouse Populations
Molecular Biology and Evolution
2019
Inferring introgression using RADseq and DFOIL: Power and pitfalls revealed in a case study of spiny lizards (Sceloporus)
Molecular Ecology Resources
2019
Historical allopatry and secondary contact or primary intergradation in the Puerto Rican crested anole, Anolis cristatellus, on Vieques Island in the Caribbean
Biological Journal of the Linnean Society
2019
Population Structure of Atlantic Croakers from the Gulf of Mexico: Evaluating a Single‐Stock Hypothesis Using a Genomic Approach
Marine and Coastal Fisheries
2019
Host hybridization as a potential mechanism of lateral symbiont transfer in deep‐sea vesicomyid clams
Molecular Ecology
2019
Population genomics and phylogeography of a benthic coastal shark (Scyliorhinus canicula) using 2b-RAD single nucleotide polymorphisms
Biological Journal of the Linnean Society
2019
Population assignment reveals low migratory connectivity in a weakly structured songbird
Molecular Ecology
2019
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics
Molecular Ecology
2019
Asymmetric introgression between fishes in the Red River basin of Texas is associated with variation in water quality
Ecology and Evolution
2019
Population genomics of the peripheral freshwater fish Polynemus melanochir (Perciformes, Polynemidae) in a changing Mekong Delta
Conservation Genetics
2019
Population genomic evidence for plant glacial survival in Scandinavia
Molecular Ecology
2019
Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus
Proceedings of the National Academy of Sciences
2019
The genetics and genomics of marine fish invasions: a global review
Reviews in Fish Biology and Fisheries
2019
Evolution of population structure in an estuarine‐dependent marine fish
Ecology and Evolution
2019
Rare coral under the genomic microscope: timing and relationships among Hawaiian Montipora
BMC Evolutionary Biology
2019
Host plant associations and geography interact to shape diversification in a specialist insect herbivore
Molecular Ecology
2019
Genome‐wide association study of an unusual dolphin mortality event reveals candidate genes for susceptibility and resistance to cetacean morbillivirus
Evolutionary Applications
2019
Emerging genomic applications in mammalian ecology, evolution, and conservation
Journal of Mammalogy
2019
An empirical pipeline for choosing the optimal clustering threshold in RADseq studies
Molecular Ecology Resources
2019
Population Genomics
2019
Genetic diversity of Koala retrovirus env gene subtypes: insights into northern and southern koala populations
Journal of General Virology
2019
Pea genomic selection for Italian environments
BMC Genomics
2019
Hybridization between sympatric hammerhead sharks in the western North Atlantic Ocean
Biology Letters
2019
RADdesigner: a workflow to select the optimal sequencing methodology in genotyping experiments on woody plant species
Tree Genetics & Genomes
2019
Scanning RNA-Seq and RAD-Seq approach to develop SNP markers closely linked to <i>MALE STERILITY 1</i> (<i>MS1</i>) in <i>Cryptomeria japonica</i> D. Don
Breeding Science
2019
Genomic prediction of grain yield in contrasting environments for white lupin genetic resources
Molecular Breeding
2019
The effects of diadromy and its loss on genomic divergence: The case of amphidromous Galaxias maculatus populations
Molecular Ecology
2019
Vertical differentiation in tropical forest butterflies: a novel mechanism generating insect diversity?
Biology Letters
2019
Population structure, genetic connectivity, and adaptation in the Olympia oyster (Ostrea lurida) along the west coast of North America
Evolutionary Applications
2019
Pesticide contamination drives adaptive genetic variation in the endemic mayfly Andesiops torrens within a semi-arid agricultural watershed of Chile
Environmental Pollution
2019
Cryptic Lineages and a Population Dammed to Incipient Extinction? Insights into the Genetic Structure of a Mekong River Catfish
Journal of Heredity
2019
Genome-wide SNP analyses reveal population structure of Portunus pelagicus along Vietnam coastline
PLOS ONE
2018
Applications of genotyping by sequencing in aquaculture breeding and genetics
Reviews in Aquaculture
2018
On the roles of landscape heterogeneity and environmental variation in determining population genomic structure in a dendritic system
Molecular Ecology
2018
RADseq approaches and applications for forest tree genetics
Tree Genetics & Genomes
2018
Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus
Proceedings of the National Academy of Sciences
2018
Genetic architecture of traits associated with reproductive barriers in Silene: Coupling, sex chromosomes and variation
Molecular Ecology
2018
Genomic signatures of environmental selection despite near‐panmixia in summer flounder
Evolutionary Applications
2018
Batch effects in a multiyear sequencing study: False biological trends due to changes in read lengths
Molecular Ecology Resources
2018
Homogenization of Populations in the Wildflower, Texas Bluebonnet (Lupinus texensis)
Journal of Heredity
2018
Genetic patterns in peripheral marine populations of the fusilier fish Caesio cuning within the Kuroshio Current
Ecology and Evolution
2018
Geopolitical species revisited: genomic and morphological data indicate that the roundtail chubGila robustaspecies complex (Teleostei, Cyprinidae) is a single species
PeerJ
2018
Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics
Ecology and Evolution
2018
gmRAD: an integrated SNP calling pipeline for genetic mapping with RADseq across a hybrid population
Briefings in Bioinformatics
2018
Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish
Nature Communications
2018
Biyoteknolojinin Güncel Uygulamalarının Su Ürünleri Genetik Alanında Kullanılması: Yeni Nesil Dizileme Teknolojileri
Journal of Limnology and Freshwater Fisheries Research
2018
Expressed exome capture sequencing: A method for cost‐effective exome sequencing for all organisms
Molecular Ecology Resources
2018
The role of hybridization during ecological divergence of southwestern white pine (Pinus strobiformis) and limber pine (P. flexilis)
Molecular Ecology
2018
Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation
Evolutionary Applications
2018
Genetic mapping and comparative genomics to inform restoration enhancement and culture of southern flounder, Paralichthys lethostigma
BMC Genomics
2018
Seascape genomics reveals adaptive divergence in a connected and commercially important mollusc, the greenlip abalone (Haliotis laevigata), along a longitudinal environmental gradient
Molecular Ecology
2018
Major histocompatibility complex variation and blood parasites in resident and migratory populations of the common yellowthroat
Journal of Evolutionary Biology
2018
These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists
Molecular Ecology
2018
An optimized approach for local de novo assembly of overlapping paired-end RAD reads from multiple individuals
Royal Society Open Science
2017
Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes
Ecology and Evolution
2017
Growth and Its Relationship to Individual Genetic Diversity of Mountain Hemlock (Tsuga mertensiana) at Alpine Treeline in Alaska: Combining Dendrochronology and Genomics
Forests
2017
Linkage Mapping and Comparative Genomics of Red Drum (Sciaenops ocellatus) Using Next-Generation Sequencing
G3 Genes|Genomes|Genetics
2017
Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P. Compressa
Molecular Phylogenetics and Evolution
2017
Identification of young‐of‐the‐year great hammerhead shark Sphyrna mokarran in northern Florida and South Carolina
Journal of Fish Biology
2017
A genomic glance through the fog of plasticity and diversification in Pocillopora
Scientific Reports
2017
Isolation and characterization of microsatellite markers from the RAD sequence of two temperate liana species: Euonymus fortunei (Celastraceae) and Schizophragma hydrangeoides (Hydrangeaceae)
Silvae Genetica
2017
Host conservatism, geography, and elevation in the evolution of a Neotropical moth radiation
Evolution
2017
Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage
Molecular Ecology Resources
2017
Landscape genomic insights into the historic migration of mountain hemlock in response to Holocene climate change
American Journal of Botany
2017
Methods in Molecular Biology
2017
What genomic data can reveal about eco-evolutionary dynamics
Nature Ecology & Evolution
2017
High-density genetic mapping identifies the genetic basis of a natural colony morphology mutant in the root rot pathogen Armillaria ostoyae
Fungal Genetics and Biology
2017
Deriving genotypes from RAD-seq short-read data using Stacks
Nature Protocols
2017
Genomics of extreme ecological specialists: multiple convergent evolution but no genetic divergence between ecotypes of Maculinea alcon butterflies
Scientific Reports
2017
Seed dispersal at alpine treeline: an assessment of seed movement within the alpine treeline ecotone
Ecosphere
2017
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
Methods in Ecology and Evolution
2017
HyRAD‐X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA
Methods in Ecology and Evolution
2016
A field ornithologist's guide to genomics: Practical considerations for ecology and conservation
The Auk
2016
Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies
Current Zoology
2016
Conservation genomics of natural and managed populations: building a conceptual and practical framework
Molecular Ecology
2016
A decade of seascape genetics: contributions to basic and applied marine connectivity
Marine Ecology Progress Series
2016
Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals
Journal of Heredity
2016
Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin
Molecular Ecology
2016
Serial sequencing of isolength RAD tags for cost-efficient genome-wide profiling of genetic and epigenetic variations
Nature Protocols
2016
Plant responses to global change: next generation biogeography
Physical Geography
2016
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
The American Naturalist
2016
Building strong relationships between conservation genetics and primary industry leads to mutually beneficial genomic advances
Molecular Ecology
2016
Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences
Scientific Reports
2016
A method for detecting recent changes in contemporary effective population size from linkage disequilibrium at linked and unlinked loci
Heredity
2016
Specific alleles at immune genes, rather than genome‐wide heterozygosity, are related to immunity and survival in the critically endangered Attwater's prairie‐chicken
Molecular Ecology
2016
What are we missing about marine invasions? Filling in the gaps with evolutionary genomics
Marine Biology
2016
Genomic resources and their influence on the detection of the signal of positive selection in genome scans
Molecular Ecology
2015
RIG: Recalibration and Interrelation of Genomic Sequence Data with the GATK
G3 Genes|Genomes|Genetics
2015
Genomic signatures of geographic isolation and natural selection in coral reef fishes
Molecular Ecology
2015
Selection and sex‐biased dispersal in a coastal shark: the influence of philopatry on adaptive variation
Molecular Ecology
2014
Demystifying the RAD fad
Molecular Ecology
2014
Population Genomics of Marine Fishes: Next-Generation Prospects and Challenges
The Biological Bulletin
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