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2025
Topology of gut Microbiota Network and Guild-Based Analysis in Chinese Adults
Phenomics
2024
Interwoven processes in fish development: microbial community succession and immune maturation
PeerJ
2024
Combining compositional data sets introduces error in covariance network reconstruction
ISME Communications
2024
Networking the desert plant microbiome, bacterial and fungal symbionts structure and assortativity in co-occurrence networks
Environmental Microbiome
2024
Dynamics and biodiversity of microbial community among seasons in Shanxi mature vinegar fermentation by semisolid-solid process
Microbiology Spectrum
2024
Integration of metataxonomic data sets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables
Microbiology Spectrum
2024
A Review on the Interaction of Acetic Acid Bacteria and Microbes in Food Fermentation: A Microbial Ecology Perspective
Foods
2023
SCNIC: Sparse correlation network investigation for compositional data
Molecular Ecology Resources
2023
Environment drives the co-occurrence of bacteria and microeukaryotes in a typical subtropical bay
Journal of Oceanology and Limnology
2022
Toward FAIR Representations of Microbial Interactions
mSystems
2022
Brain region networks for the assimilation of new associative memory into a schema
Molecular Brain
2022
Meta-Analysis of Altered Gut Microbiota Reveals Microbial and Metabolic Biomarkers for Colorectal Cancer
Microbiology Spectrum
2022
Fast and flexible analysis of linked microbiome data with mako
Nature Methods
2022
Multi-omics Analysis Revealed Coordinated Responses of Rumen Microbiome and Epithelium to High-Grain-Induced Subacute Rumen Acidosis in Lactating Dairy Cows
mSystems
2022
The diagnostic potential and barriers of microbiome based therapeutics
Diagnosis
2022
Gut microbiota is associated with metabolic health in children with obesity
Clinical Nutrition
2022
Differential network analysis of oral microbiome metatranscriptomes identifies community scale metabolic restructuring in dental caries
PNAS Nexus
2021
Null-model-based network comparison reveals core associations
ISME Communications
2021
Impact of modular mitochondrial epistatic interactions on the evolution of human subpopulations
Mitochondrion
2021
A heat diffusion multilayer network approach for the identification of functional biomarkers in rumen methane emissions
Methods
2021
Bacterial associations in the healthy human gut microbiome across populations
Scientific Reports
2020
Mainland and island populations of Mussaenda kwangtungensis differ in their phyllosphere fungal community composition and network structure
Scientific Reports
2020
Maternal Microbiota, Cortisol Concentration, and Post-Partum Weight Recovery Are Dependent on Mode of Delivery
Nutrients
2020
Progress in Molecular Biology and Translational Science
2020
Integrating Computational Methods to Investigate the Macroecology of Microbiomes
Frontiers in Genetics
2020
Environmental and intrinsic factors shaping gut microbiota composition and diversity and its relation to metabolic health in children and early adolescents: A population-based study
Gut Microbes
2020
Syntrophy via Interspecies H 2 Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut
mBio
2020
Predictive biology: modelling, understanding and harnessing microbial complexity
Nature Reviews Microbiology
2020
A Comprehensive Coexpression Network Analysis in Vibrio cholerae
mSystems
2020
Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structure
FEMS Microbiology Ecology
2020
Microbial co-occurrence networks of gut microbiota reveal community conservation and diet-associated shifts in cichlid fishes
Animal Microbiome
2020
You’ve got male: Sex and the microbiota-gut-brain axis across the lifespan
Frontiers in Neuroendocrinology
2019
Co-existence of Network Architectures Supporting the Human Gut Microbiome
iScience
2019
Gene-diet interactions associated with complex trait variation in an advanced intercross outbred mouse line
Nature Communications
2019
The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health
BMC Biology
2019
Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
Frontiers in Microbiology
2019
The Microbiota-Gut-Brain Axis
Physiological Reviews
2018
Helicobacter pylori [Working Title]
2018
Gut microbiota associations with common diseases and prescription medications in a population-based cohort
Nature Communications
2018
Detection of multi-dimensional co-exclusion patterns in microbial communities
Bioinformatics
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