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2020
Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom
Environmental Microbiome
2020
Metagenomics - Basics, Methods and Applications
2020
An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut Microbiome
Metabolites
2020
Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network
mBio
2020
Metagenomics - Basics, Methods and Applications
2019
Biophysical and physiological processes causing oxygen loss from coral reefs
eLife
2019
Assessing taxonomic metagenome profilers with OPAL
Genome Biology
2019
2019 42nd International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO)
2019
2019 Third World Conference on Smart Trends in Systems Security and Sustainablity (WorldS4)
2019
Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers
Frontiers in Microbiology
2019
Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT
Genome Biology
2018
Metagenomic Functional Potential Predicts Degradation Rates of a Model Organophosphorus Xenobiotic in Pesticide Contaminated Soils
Frontiers in Microbiology
2018
Contrasting the Genetic Patterns of Microbial Communities in Soda Lakes with and without Cyanobacterial Bloom
Frontiers in Microbiology
2018
Comprehensive simulation of metagenomic sequencing data with non-uniform sampling distribution
Quantitative Biology
2018
Proceedings of the International Conference "Mathematical Biology and Bioinformatics"
2017
Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
BMC Genomics
2017
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Nature Methods
2017
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
Nature Communications
2017
A Metagenomic Approach to Cyanobacterial Genomics
Frontiers in Microbiology
2017
An accurate and fast alignment-free method for profiling microbial communities
Journal of Bioinformatics and Computational Biology
2017
Bacterial Community Associated with the Reef Coral Mussismilia braziliensis's Momentum Boundary Layer over a Diel Cycle
Frontiers in Microbiology
2017
Bioinformatics tools for quantitative and functional metagenome and metatranscriptome data analysis in microbes
Briefings in Bioinformatics
2017
The Deep-Sea Microbial Community from the Amazonian Basin Associated with Oil Degradation
Frontiers in Microbiology
2016
Molecular Diversity of Environmental Prokaryotes
2016
RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes
Nucleic Acids Research
2016
Computational approaches to predict bacteriophage–host relationships
FEMS Microbiology Reviews
2016
MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data
Bioinformatics
2016
Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis
BMC Bioinformatics
2016
Lytic to temperate switching of viral communities
Nature
2016
SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data
Bioinformatics
2016
PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes
PeerJ
2016
Evaluating methods for purifying cyanobacterial cultures by qPCR and high-throughput Illumina sequencing
Journal of Microbiological Methods
2015
Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses
Briefings in Bioinformatics
2015
From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems
Cellular and Molecular Life Sciences
2015
Recovering full-length viral genomes from metagenomes
Frontiers in Microbiology
2015
Taxator-tk: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods
Bioinformatics
2015
GenomePeek—an online tool for prokaryotic genome and metagenome analysis
PeerJ
2015
BaMBa: towards the integrated management of Brazilian marine environmental data
Database
2015
Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems
PLOS ONE
2015
Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
BMC Genomics
2015
Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes
Frontiers in Microbiology
2014
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
PeerJ
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