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2024	Reference-free structural variant detection in microbiomes via long-read co-assembly graphs Bioinformatics Kristen D Curry, Feiqiao Brian Yu, Summer E Vance, Santiago Segarra, Devaki Bhaya, Rayan Chikhi, Eduardo P C Rocha, Todd J Treangen
2024	Evaluation of Genomic Contamination Detection Tools and Influence of Horizontal Gene Transfer on Their Efficiency through Contamination Simulations at Various Taxonomic Ranks Applied Microbiology Luc Cornet, Valérian Lupo, Stéphane Declerck, Denis Baurain
2024	Fate and transport modelling for evaluating antibiotic resistance in aquatic environments: Current knowledge and research priorities Journal of Hazardous Materials Mahesh Jampani, Javier Mateo-Sagasta, Aparna Chandrasekar, Despo Fatta-Kassinos, David W. Graham, Ritu Gothwal, Arshnee Moodley, Vishnumurthy Mohan Chadag, David Wiberg, Simon Langan
2023	Leveraging comparative genomics to uncover alien genes in bacterial genomes Microbial Genomics Soham Sengupta, Rajeev K. Azad
2022	Current Methods for Recombination Detection in Bacteria International Journal of Molecular Sciences Anton E. Shikov, Yury V. Malovichko, Anton A. Nizhnikov, Kirill S. Antonets
2022
2019	Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes Genome Biology and Evolution Gavin M Douglas, Morgan G I Langille
2019	Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications Raghavender Surya Upadhyayula, Pooran Singh Solanki, Prashanth Suravajhala, Krishna Mohan Medicherla
2019	MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches Microbiome Weizhi Song, Bernd Wemheuer, Shan Zhang, Kerrin Steensen, Torsten Thomas
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