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2024	ATLAS: protein flexibility description from atomistic molecular dynamics simulations Nucleic Acids Research Yann Vander Meersche, Gabriel Cretin, Aria Gheeraert, Jean-Christophe Gelly, Tatiana Galochkina
2024	Molecular dynamics of the human RhD and RhAG blood group proteins Frontiers in Chemistry Aline Floch, Tatiana Galochkina, France Pirenne, Christophe Tournamille, Alexandre G. de Brevern
2024	Machine learning-based prediction of proteins’ architecture using sequences of amino acids and structural alphabets Journal of Biomolecular Structure and Dynamics Jad Abbass, Charles Parisi
2023	Quality assessment of V H H models Journal of Biomolecular Structure and Dynamics Aravindan Arun Nadaradjane, Julien Diharce, Joseph Rebehmed, Frédéric Cadet, Fabrice Gardebien, Jean-Christophe Gelly, Catherine Etchebest, Alexandre G. de Brevern
2023	Evaluation of the Potential Impact of In Silico Humanization on VHH Dynamics International Journal of Molecular Sciences Carla Martins, Julien Diharce, Aravindan Arun Nadaradjane, Alexandre G. de Brevern
2023	Structural Space of the Duffy Antigen/Receptor for Chemokines’ Intrinsically Disordered Ectodomain 1 Explored by Temperature Replica-Exchange Molecular Dynamics Simulations International Journal of Molecular Sciences Agata Kranjc, Tarun Jairaj Narwani, Sophie S. Abby, Alexandre G. de Brevern
2023	Structural and Dynamic Differences between Calreticulin Mutants Associated with Essential Thrombocythemia Biomolecules Ragousandirane Radjasandirane, Alexandre G. de Brevern
2023	General Trends of the Camelidae Antibody VHHs Domain Dynamics International Journal of Molecular Sciences Akhila Melarkode Vattekatte, Julien Diharce, Joseph Rebehmed, Frédéric Cadet, Fabrice Gardebien, Catherine Etchebest, Alexandre G. de Brevern
2022	Analysis of Integrin αIIb Subunit Dynamics Reveals Long-Range Effects of Missense Mutations on Calf Domains International Journal of Molecular Sciences Sali Anies, Vincent Jallu, Julien Diharce, Tarun J. Narwani, Alexandre G. de Brevern
2022	Prediction of structural alphabet protein blocks using data mining Biochimie Mirjana M. Maljković, Nenad S. Mitić, Alexandre G. de Brevern
2022	VHH Structural Modelling Approaches: A Critical Review International Journal of Molecular Sciences Poonam Vishwakarma, Akhila Melarkode Vattekatte, Nicolas Shinada, Julien Diharce, Carla Martins, Frédéric Cadet, Fabrice Gardebien, Catherine Etchebest, Aravindan Arun Nadaradjane, Alexandre G. de Brevern
2022	Shaking the β-Bulges IEEE/ACM Transactions on Computational Biology and Bioinformatics Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
2021	Bioinformatique
2021	PYTHIA: Deep Learning Approach for Local Protein Conformation Prediction International Journal of Molecular Sciences Gabriel Cretin, Tatiana Galochkina, Alexandre G. de Brevern, Jean-Christophe Gelly
2021	Insights into Comparative Modeling of VHH Domains International Journal of Molecular Sciences Akhila Melarkode Vattekatte, Frédéric Cadet, Jean-Christophe Gelly, Alexandre G. de Brevern
2020	Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction PeerJ Akhila Melarkode Vattekatte, Nicolas Ken Shinada, Tarun J. Narwani, Floriane Noël, Olivier Bertrand, Jean-Philippe Meyniel, Alain Malpertuy, Jean-Christophe Gelly, Frédéric Cadet, Alexandre G. de Brevern
2020	Data set of intrinsically disordered proteins analysed at a local protein conformation level Data in Brief Akhila Melarkode Vattekatte, Tarun Jairaj Narwani, Aline Floch, Mirjana Maljković, Soubika Bisoo, Nicolas K. Shinada, Agata Kranjc, Jean-Christophe Gelly, Narayanaswamy Srinivasan, Nenad Mitić, Alexandre G. de Brevern
2020	Discrete analyses of protein dynamics Journal of Biomolecular Structure and Dynamics Tarun Jairaj Narwani, Pierrick Craveur, Nicolas K. Shinada, Aline Floch, Hubert Santuz, Akhila Melarkode Vattekatte, Narayanaswamy Srinivasan, Joseph Rebehmed, Jean-Christophe Gelly, Catherine Etchebest, Alexandre G. de Brevern
2020	Impact of protein dynamics on secondary structure prediction Biochimie Alexandre G. de Brevern
2020	Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet Biomolecules Alexandre G. de Brevern
2020	Substitution matrix based color schemes for sequence alignment visualization BMC Bioinformatics Patrick Kunzmann, Benjamin E. Mayer, Kay Hamacher
2020	A structural entropy index to analyse local conformations in intrinsically disordered proteins Journal of Structural Biology Melarkode Vattekatte Akhila, Tarun Jairaj Narwani, Aline Floch, Mirjana Maljković, Soubika Bisoo, Nicolas K. Shinada, Agata Kranjc, Jean-Christophe Gelly, Narayanaswamy Srinivasan, Nenad Mitić, Alexandre G. de Brevern
2019	Engineering of a skin-fiber-opening enzyme for sulfide-free leather beam house operation through xenobiology Green Chemistry Suryalakshmi Pandurangan, Ilamaran Meganathan, Sriram Ragavan, Kamini Numbi Ramudu, Easwaramoorthi Shanmugam, Ganesh Shanmugam, Ayyadurai Niraikulam
2019	Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket mBio Pierrick Craveur, Anna T. Gres, Karen A. Kirby, Dandan Liu, John A. Hammond, Yisong Deng, Stefano Forli, David S. Goodsell, James R. Williamson, Stefan G. Sarafianos, Arthur J. Olson
2019	Structural variations within proteins can be as large as variations observed across their homologues Biochimie Iyanar Vetrivel, Alexandre G. de Brevern, Frédéric Cadet, Narayanaswamy Srinivasan, Bernard Offmann
2019	iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach Source Code for Biology and Medicine Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
2019	Probing the functional conformations of an atypical proline-rich fusion peptide Physical Chemistry Chemical Physics Nivedita Dutta, Saikat Dutta Chowdhury, Ansuman Lahiri
2018	The LILI Motif of M3-S2 Linkers Is a Component of the NMDA Receptor Channel Gate Frontiers in Molecular Neuroscience Marek Ladislav, Jiri Cerny, Jan Krusek, Martin Horak, Ales Balik, Ladislav Vyklicky