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2025	AlloSHP: deconvoluting single homeologous polymorphism for phylogenetic analysis of allopolyploids Plant Methods R. Sancho, P. Catalán, J. P. Vogel, B. Contreras-Moreira
2022	Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids The Plant Journal Rubén Sancho, Luis A. Inda, Antonio Díaz‐Pérez, David L. Des Marais, Sean Gordon, John P. Vogel, Joanna Lusinska, Robert Hasterok, Bruno Contreras‐Moreira, Pilar Catalán
2022	Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition Nature Plants Yongbin Zhuang, Xutong Wang, Xianchong Li, Junmei Hu, Lichuan Fan, Jacob B. Landis, Steven B. Cannon, Jane Grimwood, Jeremy Schmutz, Scott A. Jackson, Jeffrey J. Doyle, Xian Sheng Zhang, Dajian Zhang, Jianxin Ma
2022	Novel Approaches for Species Concepts and Delimitation in Polyploids and Hybrids Plants Elvira Hörandl
2021	Jeff J. Doyle—Recipient of the 2020 Asa Gray Award Systematic Botany C. Donovan Bailey, Jeremy E. Coate, Ashley N. Eagan, Shannon C. K. Straub
2021	Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids Briefings in Bioinformatics Guanjing Hu, Corrinne E Grover, Mark A Arick, Meiling Liu, Daniel G Peterson, Jonathan F Wendel
2020	Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana The Plant Cell Michael J. Song, Barney I. Potter, Jeff J. Doyle, Jeremy E. Coate
2019	Polyploidy, the Nucleotype, and Novelty: The Impact of Genome Doubling on the Biology of the Cell International Journal of Plant Sciences Jeff J. Doyle, Jeremy E. Coate
2019	Advances in legume research in the genomics era Australian Systematic Botany Ashley N. Egan, Mohammad Vatanparast
2018	Northern Hemisphere disjunctions in Lactuca (Cichorieae, Asteraceae): independent Eurasia to North America migrations and allopolyploidization Willdenowia Katy E. Jones, Edward E. Schilling, Elisabete F. Dias, Norbert Kilian
2017	Evolution of Gene Expression Balance Among Homeologs of Natural Polyploids G3 Genes\|Genomes\|Genetics Jasdeep S Mutti, Ramanjot K Bhullar, Kulvinder S Gill
2017	Non-Additive Transcriptomic Responses to Inoculation with Rhizobia in a Young Allopolyploid Compared with Its Diploid Progenitors Genes Adrian Powell, Jeff Doyle
2017	Natural variation in stress response gene activity in the allopolyploid Arabidopsis suecica BMC Genomics Keisha D. Carlson, Noe Fernandez-Pozo, Aureliano Bombarely, Rahul Pisupati, Lukas A. Mueller, Andreas Madlung
2017	Characterizing the allopolyploid species among the wild relatives of soybean: Utility of reduced representation genotyping methodologies Journal of Systematics and Evolution Sue Sherman‐Broyles, Aureliano Bombarely, Jeff Doyle
2016	Expression‐level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors New Phytologist Jeremy E. Coate, Michael J. Song, Aureliano Bombarely, Jeff J. Doyle
2016	Genomics-based strategies for the use of natural variation in the improvement of crop metabolism Plant Science Federico Scossa, Yariv Brotman, Francisco de Abreu e Lima, Lothar Willmitzer, Zoran Nikoloski, Takayuki Tohge, Alisdair R. Fernie
2016	Genomic signature of successful colonization of Eurasia by the allopolyploid shepherd's purse (Capsella bursa‐pastoris) Molecular Ecology A. Cornille, A. Salcedo, D. Kryvokhyzha, S. Glémin, K. Holm, S. I. Wright, M. Lascoux
2016	Enhanced rhizobial symbiotic capacity in an allopolyploid species of Glycine (Leguminosae) American Journal of Botany Adrian F. Powell, Jeff J. Doyle
2014	Complete Plastome Sequences from Glycine syndetika and Six Additional Perennial Wild Relatives of Soybean G3 Genes\|Genomes\|Genetics Sue Sherman-Broyles, Aureliano Bombarely, Jane Grimwood, Jeremy Schmutz, Jeff Doyle
2014	The wild side of a major crop: Soybean's perennial cousins from Down Under American Journal of Botany Sue Sherman‐Broyles, Aureliano Bombarely, Adrian F. Powell, Jane L. Doyle, Ashley N. Egan, Jeremy E. Coate, Jeff J. Doyle
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