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Haseeb Nisar, Komal Javed, Areej Arshad, Hamna Habib, Kashif Iqbal Sahibzada, Samiah Shahid

Necla Koçhan, Ayyub Sheikhi

Ahu Cephe, Necla Koçhan, Gözde Ertürk Zararsız, Vahap Eldem, Erdal Coşgun, Erdem Karabulut, Gökmen Zararsız

Ahu Cephe, Necla Koçhan, Gözde Ertürk Zararsız, Vahap Eldem, Gökmen Zararsız

Petra Hruba, Jiri Klema, Anh Vu Le, Eva Girmanova, Petra Mrazova, Annick Massart, Dita Maixnerova, Ludek Voska, Gian Benedetto Piredda, Luigi Biancone, Ana Ramirez Puga, Nurhan Seyahi, Mehmet Sukru Sever, Laurent Weekers, Anja Muhfeld, Klemens Budde, Bruno Watschinger, Marius Miglinas, Ivan Zahradka, Marc Abramowicz, Daniel Abramowicz, Ondrej Viklicky

Ahu Cephe, Necla Koçhan, Gözde Ertürk Zararsız, Vahap Eldem, Gökmen Zararsız

Ahu Cephe, Necla Koçhan, Esma Gamze Aksel, Funda İpekten, Serra İlayda Yerlitaş, Gözde Ertürk Zararsız, Gökmen Zararsız

Maryam Nesvaderani, Bhavjinder K Dhillon, Tracy Chew, Benjamin Tang, Arjun Baghela, Robert EW Hancock, Guy D Eslick, Michael Cox

Bulent Haznedar, Nihat Y. Simsek

Nicholas D. Henkel, Marissa A. Smail, Xiaojun Wu, Heather A. Enright, Nicholas O. Fischer, Hunter M. Eby, Robert E. McCullumsmith, Rammohan Shukla

Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri

Zeina A. Shboul, Norou Diawara, Arastoo Vossough, James Y. Chen, Khan M. Iftekharuddin

Dincer Goksuluk, Gokmen Zararsiz, Selcuk Korkmaz, Vahap Eldem, Gozde Erturk Zararsiz, Erdener Ozcetin, Ahmet Ozturk, Ahmet Ergun Karaagaoglu

Necla Koçhan, G. Yazgi Tutuncu, Gordon K. Smyth, Luke C. Gandolfo, Göknur Giner

Alexandros Kanterakis, George Potamias, George P. Patrinos

2025	Identification of potential candidate genes in rheumatoid arthritis using integrated machine learning and WGCNA approach on transcriptomic data Network Modeling Analysis in Health Informatics and Bioinformatics Haseeb Nisar, Komal Javed, Areej Arshad, Hamna Habib, Kashif Iqbal Sahibzada, Samiah Shahid
2025	A copula-based classification using agglomerated feature selection_extraction: an application in cervical cancer diagnostic Communications Faculty of Sciences University of Ankara Series A1 Mathematics and Statistics Necla Koçhan, Ayyub Sheikhi
2023	voomSOM: voom-based Self-Organizing Maps for Clustering RNASequencing Data Current Bioinformatics Ahu Cephe, Necla Koçhan, Gözde Ertürk Zararsız, Vahap Eldem, Erdal Coşgun, Erdem Karabulut, Gökmen Zararsız
2023	Encyclopedia of Data Science and Machine Learning Ahu Cephe, Necla Koçhan, Gözde Ertürk Zararsız, Vahap Eldem, Gökmen Zararsız
2023	Novel transcriptomic signatures associated with premature kidney allograft failure eBioMedicine Petra Hruba, Jiri Klema, Anh Vu Le, Eva Girmanova, Petra Mrazova, Annick Massart, Dita Maixnerova, Ludek Voska, Gian Benedetto Piredda, Luigi Biancone, Ana Ramirez Puga, Nurhan Seyahi, Mehmet Sukru Sever, Laurent Weekers, Anja Muhfeld, Klemens Budde, Bruno Watschinger, Marius Miglinas, Ivan Zahradka, Marc Abramowicz, Daniel Abramowicz, Ondrej Viklicky
2023	Research Anthology on Bioinformatics, Genomics, and Computational Biology Ahu Cephe, Necla Koçhan, Gözde Ertürk Zararsız, Vahap Eldem, Gökmen Zararsız
2023	Oncology: Genomics, Precision Medicine and Therapeutic Targets Ahu Cephe, Necla Koçhan, Esma Gamze Aksel, Funda İpekten, Serra İlayda Yerlitaş, Gözde Ertürk Zararsız, Gökmen Zararsız
2022	Gene Expression Profiling: Identification of Novel Pathways and Potential Biomarkers in Severe Acute Pancreatitis Journal of the American College of Surgeons Maryam Nesvaderani, Bhavjinder K Dhillon, Tracy Chew, Benjamin Tang, Arjun Baghela, Robert EW Hancock, Guy D Eslick, Michael Cox
2022	A Comparative Study on Classification Methods for Renal Cell and Lung Cancers Using RNA-Seq Data IEEE Access Bulent Haznedar, Nihat Y. Simsek
2021	Cellular, molecular, and therapeutic characterization of pilocarpine-induced temporal lobe epilepsy Scientific Reports Nicholas D. Henkel, Marissa A. Smail, Xiaojun Wu, Heather A. Enright, Nicholas O. Fischer, Hunter M. Eby, Robert E. McCullumsmith, Rammohan Shukla
2021	Genes and regulatory mechanisms associated with experimentally-induced bovine respiratory disease identified using supervised machine learning methodology Scientific Reports Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, Andy D. Perkins, Bindu Nanduri
2021	Joint Modeling of RNAseq and Radiomics Data for Glioma Molecular Characterization and Prediction Frontiers in Medicine Zeina A. Shboul, Norou Diawara, Arastoo Vossough, James Y. Chen, Khan M. Iftekharuddin
2019	MLSeq: Machine learning interface for RNA-sequencing data Computer Methods and Programs in Biomedicine Dincer Goksuluk, Gokmen Zararsiz, Selcuk Korkmaz, Vahap Eldem, Gozde Erturk Zararsiz, Erdener Ozcetin, Ahmet Ozturk, Ahmet Ergun Karaagaoglu
2019	qtQDA: quantile transformed quadratic discriminant analysis for high-dimensional RNA-seq data PeerJ Necla Koçhan, G. Yazgi Tutuncu, Gordon K. Smyth, Luke C. Gandolfo, Göknur Giner
2018	Human Genome Informatics Alexandros Kanterakis, George Potamias, George P. Patrinos
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