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2025
Unlocking the potential of CRISPR tools and databases for precision genome editing
Frontiers in Plant Science
2024
Time-series metaproteogenomics of a high-CO2 aquifer reveals active viruses with fluctuating abundances and broad host ranges
microLife
2024
CRISPR-Cas inhibits plasmid transfer and immunizes bacteria against antibiotic resistance acquisition in manure
Applied and Environmental Microbiology
2024
Unleashing the potential: type I CRISPR-Cas systems in actinomycetes for genome editing
Natural Product Reports
2024
CRISPR genotyping methods: Tracing the evolution from spoligotyping to machine learning
Biochimie
2024
Ecological and evolutionary dynamics of CRISPR-Cas systems in Clostridium botulinum: Insights from genome mining and comparative analysis
Infection, Genetics and Evolution
2023
Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats
Nature Microbiology
2023
CRISPR-Cas systems feature and targeting phages diversity in Lacticaseibacillus rhamnosus strains
Frontiers in Microbiology
2023
Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick
ISME Communications
2023
CRISPR Comparison Toolkit: Rapid Identification, Visualization, and Analysis of CRISPR Array Diversity
The CRISPR Journal
2023
Mining microbial organisms to discover and characterize novel CRISPR-Cas systems
Current Opinion in Biomedical Engineering
2023
DIVE: a reference-free statistical approach to diversity-generating and mobile genetic element discovery
Genome Biology
2023
Molecular characterization of Listeria monocytogenes strains isolated from imported food in China from 14 countries/regions, 2003-2018
Frontiers in Cellular and Infection Microbiology
2023
Complete Genome Sequence of Streptomyces sp. HP-A2021, a Promising Bacterium for Natural Product Discovery
Biochemical Genetics
2023
A predicted CRISPR-mediated symbiosis between uncultivated archaea
Nature Microbiology
2023
Marine viruses disperse bidirectionally along the natural water cycle
Nature Communications
2022
Using metagenomic data to boost protein structure prediction and discovery
Computational and Structural Biotechnology Journal
2022
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper
Bioinformatics
2022
CRISPR-Cas Systems in Gut Microbiome of Children with Autism Spectrum Disorders
Life
2022
Genome editing and bioinformatics
Gene and Genome Editing
2022
Methods in Molecular Biology
2022
Host-Associated Phages Disperse across the Extraterrestrial Analogue Antarctica
Applied and Environmental Microbiology
2022
CrisprVi: a software for visualizing and analyzing CRISPR sequences of prokaryotes
BMC Bioinformatics
2021
Microbial Hotspots in Lithic Microhabitats Inferred from DNA Fractionation and Metagenomics in the Atacama Desert
Microorganisms
2021
Lytic archaeal viruses infect abundant primary producers in Earth’s crust
Nature Communications
2021
Shining light on a deep-sea bacterial symbiont population structure with CRISPR
Microbial Genomics
2021
Identification of Natural CRISPR Systems and Targets in the Human Microbiome
Cell Host & Microbe
2021
SCRAMBLER: A Tool for De Novo CRISPR Array Reconstruction and Its Application for Analysis of the Structure of Prokaryotic Populations
The CRISPR Journal
2021
Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter
Nucleic Acids Research
2021
Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more
PLOS Computational Biology
2021
2021
Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil
mSystems
2021
Engineered CRISPR-Cas systems for the detection and control of antibiotic-resistant infections
Journal of Nanobiotechnology
2021
CRISPRclassify: Repeat-Based Classification of CRISPR Loci
The CRISPR Journal
2020
Higher-order Markov models for metagenomic sequence classification
Bioinformatics
2020
In silico Method in CRISPR/Cas System: An Expedite and Powerful Booster
Frontiers in Oncology
2020
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
Nature Microbiology
2019
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Nucleic Acids Research
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