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2024	Oncology Omer A. Idris, Nicholas Deleon, Micah Gustafson, Delour Haj, Tiantian Zhang
2023	Meta-analysis of integrated ChIP-seq and transcriptome data revealed genomic regions affected by estrogen receptor alpha in breast cancer BMC Medical Genomics Zeynab Piryaei, Zahra Salehi, Esmaeil Ebrahimie, Mansour Ebrahimi, Kaveh Kavousi
2023	Computational methods for identifying enhancer‐promoter interactions Quantitative Biology Haiyan Gong, Zhengyuan Chen, Yuxin Tang, Minghong Li, Sichen Zhang, Xiaotong Zhang, Yang Chen
2023	Computational methods to predict Enhancer-target Gene Pairs SCIENTIA SINICA Vitae XiaoQiang XU, Ting CUI, Han ZHANG, DeSi SHANG, ChunQuan LI
2022	EPIXplorer: A web server for prediction, analysis and visualization of enhancer-promoter interactions Nucleic Acids Research Li Tang, Zhizhou Zhong, Yisheng Lin, Yifei Yang, Jun Wang, James F Martin, Min Li
2021	TempoMAGE: a deep learning framework that exploits the causal dependency between time-series data to predict histone marks in open chromatin regions at time-points with missing ChIP-seq datasets Bioinformatics Mohammad Hallal, Mariette Awad, Pierre Khoueiry
2021	Computational methods for the prediction of chromatin interaction and organization using sequence and epigenomic profiles Briefings in Bioinformatics Huan Tao, Hao Li, Kang Xu, Hao Hong, Shuai Jiang, Guifang Du, Junting Wang, Yu Sun, Xin Huang, Yang Ding, Fei Li, Xiaofei Zheng, Hebing Chen, Xiaochen Bo
2020	Ligand dependent gene regulation by transient ERα clustered enhancers PLOS Genetics Bharath Saravanan, Deepanshu Soota, Zubairul Islam, Sudeshna Majumdar, Rajat Mann, Sweety Meel, Umer Farooq, Kaivalya Walavalkar, Srimonta Gayen, Anurag Kumar Singh, Sridhar Hannenhalli, Dimple Notani
2019	7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs BMC Genomics Jonas Ibn-Salem, Miguel A. Andrade-Navarro
2018	Genome-wide Estrogen Receptor-α activation is sustained, not cyclical eLife Andrew N Holding, Amy E Cullen, Florian Markowetz
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