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2025
Living on the Rocks: Genomic Analysis of Limestone Langurs Provides Novel Insights into the Adaptive Evolution in Extreme Karst Environments
Genomics, Proteomics & Bioinformatics
2024
Assembling bacterial puzzles: piecing together functions into microbial pathways
NAR Genomics and Bioinformatics
2022
Inverse Potts model improves accuracy of phylogenetic profiling
Bioinformatics
2022
Identifying protein function and functional links based on large-scale co-occurrence patterns
PLOS ONE
2022
DEPCOD: a tool to detect and visualize co-evolution of protein domains
Nucleic Acids Research
2021
GFICLEE: ultrafast tree-based phylogenetic profile method inferring gene function at the genomic-wide level
BMC Genomics
2021
Protein–protein interaction network: an emerging tool for understanding fish disease in aquaculture
Reviews in Aquaculture
2021
Ten Years of Collaborative Progress in the Quest for Orthologs
Molecular Biology and Evolution
2021
The factors for the early and late development of midbrain dopaminergic neurons segregate into two distinct evolutionary clusters
Brain Disorders
2021
Co-evolution based machine-learning for predicting functional interactions between human genes
Nature Communications
2021
PhyloCorrelate: inferring bacterial gene–gene functional associations through large-scale phylogenetic profiling
Bioinformatics
2021
CladeOScope: functional interactions through the prism of clade-wise co-evolution
NAR Genomics and Bioinformatics
2020
Optimization of co-evolution analysis through phylogenetic profiling reveals pathway-specific signals
Bioinformatics
2020
Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes
PLOS Computational Biology
2020
Prediction of cancer driver genes through network-based moment propagation of mutation scores
Bioinformatics
2019
PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
BMC Evolutionary Biology
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