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2025
Deep mutationally scanned CHIKV E3/E2 virus library maps viral amino acid preferences and predicts viral escape mutants of neutralizing CHIKV antibodies
Journal of Virology
2025
Variant scoring tools for deep mutational scanning
Molecular Systems Biology
2023
Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation
The American Journal of Human Genetics
2022
Phylogenetic inference of changes in amino acid propensities with single-position resolution
PLOS Computational Biology
2021
Globally defining the effects of mutations in a picornavirus capsid
eLife
2019
Comprehensive mapping of adaptation of the avian influenza polymerase protein PB2 to humans
eLife
2019
Deep Mutational Scan of the Highly Conserved Influenza A Virus M1 Matrix Protein Reveals Substantial Intrinsic Mutational Tolerance
Journal of Virology
2019
Comprehensive profiling of translation initiation in influenza virus infected cells
PLOS Pathogens
2018
Mapping mutational effects along the evolutionary landscape of HIV envelope
eLife
2018
Conditional Approximate Bayesian Computation: A New Approach for Across-Site Dependency in High-Dimensional Mutation–Selection Models
Molecular Biology and Evolution
2018
Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence
Virus Evolution
2018
Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance
Biology Open
2018
Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants
Proceedings of the National Academy of Sciences
2018
Mapping the Evolutionary Potential of RNA Viruses
Cell Host & Microbe
2018
Mechanisms and Concepts in RNA Virus Population Dynamics and Evolution
Annual Review of Virology
2018
Mutation and Epistasis in Influenza Virus Evolution
Viruses
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