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Steven J. Biller, M. Gray Ryan, Jasmine Li, Andrew Burger, John M. Eppley, Thomas Hackl, Edward F. DeLong

Manuel Martinez-Garcia, Monica Lluesma-Gomez, Laura Perez-Martin, Esther Rubio-Portillo, Ana Belen Martin-Cuadrado, Francisco Nadal-Molero, Aitana Escolano-Vico, Fernando Santos Sanchez, Victoria Orphan, Josefa Antón

Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron

Kathryn L. Howe, Julian Zaugg, Olivia U. Mason

Manal Chrairi, Said Barrijal, Antonio Castellano-Hinojosa, Youssra Boumait, Chahrazade El Hamouti, Afaf Lamzouri, Hassan Ghazal, Rajaa Chahboune

Lirui Liu, Wen-Cong Huang, Jie Pan, Jiayi Li, Yuhan Huang, Dayu Zou, Huan Du, Yang Liu, Meng Li

Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida

Johanna C. Winder, William Boulton, Asaf Salamov, Sarah Lena Eggers, Katja Metfies, Vincent Moulton, Thomas Mock

Ge Liu, Yeqi Shan, Rui Liu, Chaomin Sun

Carmen Molina-Pardines, Jose M. Haro-Moreno, Mario López-Pérez

Hao-Bo Guo, Vanessa A. Varaljay, Gary Kedziora, Kimberly Taylor, Sanaz Farajollahi, Nina Lombardo, Eric Harper, Chia Hung, Marie Gross, Alexander Perminov, Patrick Dennis, Nancy Kelley-Loughnane, Rajiv Berry

Marta Canuti, Gabrielle Large, Joost T. P. Verhoeven, Suzanne C. Dufour

Angela Peeb, Nga Phuong Dang, Marika Truu, Hiie Nõlvak, Chris Petrich, Jaak Truu

Célio Dias Santos‐Júnior, Ramiro Logares, Flávio Henrique‐Silva

Silvia G. Acinas, Marta Sebastián, Isabel Ferrera

Juan José Pierella Karlusich, Charlotte Nef, Chris Bowler, Richard G. Dorrell

Sergio A. Muñoz-Gómez, Edward Susko, Kelsey Williamson, Laura Eme, Claudio H. Slamovits, David Moreira, Purificación López-García, Andrew J. Roger

Yosuke Nishimura, Susumu Yoshizawa

Andy O. Leu, John M. Eppley, Andrew Burger, Edward F. DeLong

Silvia G. Acinas, Pablo Sánchez, Guillem Salazar, Francisco M. Cornejo-Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima-Mendez, Simon Roux, José M. González, Jesús M. Arrieta, Intikhab S. Alam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustí, Takashi Gojobori, Dolors Vaqué, Matthew B. Sullivan, Carlos Pedrós-Alió, Ramon Massana, Carlos M. Duarte, Josep M. Gasol

Elaina D Graham, Benjamin J Tully

Julian Damashek, Aimee Oyinlade Okotie-Oyekan, Scott Michael Gifford, Alexey Vorobev, Mary Ann Moran, James Timothy Hollibaugh

Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork

Mingxi Hua, Jingyuan Liu, Pengcheng Du, Xinzhe Liu, Min Li, Huizhu Wang, Chen Chen, Xinmin Xu, Yu Jiang, Yajie Wang, Hui Zeng, Ang Li

Wenxuan He, Yangjie Li, Dechao Zhang

M T Jahn, T Lachnit, S M Markert, C Stigloher, L Pita, M Ribes, B E Dutilh, U Hentschel

Clara Jégousse, Pauline Vannier, René Groben, Frank Oliver Glöckner, Viggó Marteinsson

Dominique Boeuf, John M. Eppley, Daniel R. Mende, Rex R. Malmstrom, Tanja Woyke, Edward F. DeLong

Francisco Zorrilla, Filip Buric, Kiran R Patil, Aleksej Zelezniak

Marta Royo-Llonch, Pablo Sánchez, Clara Ruiz-González, Guillem Salazar, Carlos Pedrós-Alió, Marta Sebastián, Karine Labadie, Lucas Paoli, Federico M. Ibarbalz, Lucie Zinger, Benjamin Churcheward, Marcel Babin, Peer Bork, Emmanuel Boss, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Nicole Poulton, Jeroen Raes, Christian Sardet, Sabrina Speich, Lars Setmmann, Matthew B. Sullivan, Samuel Chaffron, Damien Eveillard, Eric Karsenti, Shinichi Sunagawa, Patrick Wincker, Lee Karp-Boss, Chris Bowler, Silvia G. Acinas

Nestor Arandia‐Gorostidi, José M. González, Tamara M. Huete‐Stauffer, Mohd I. Ansari, Xosé Anxelu G. Morán, Laura Alonso‐Sáez

Renxing Liang, Maggie C. Y. Lau, Evan T. Saitta, Zachary K. Garvin, Tullis C. Onstott

Kento Tominaga, Daichi Morimoto, Yosuke Nishimura, Hiroyuki Ogata, Takashi Yoshida

Frederik Schulz, Simon Roux, David Paez-Espino, Sean Jungbluth, David A. Walsh, Vincent J. Denef, Katherine D. McMahon, Konstantinos T. Konstantinidis, Emiley A. Eloe-Fadrosh, Nikos C. Kyrpides, Tanja Woyke

Jose M. Haro‐Moreno, Francisco Rodriguez‐Valera, Riccardo Rosselli, Francisco Martinez‐Hernandez, Juan J. Roda‐Garcia, Monica Lluesma Gomez, Oscar Fornas, Manuel Martinez‐Garcia, Mario López‐Pérez

Yihua Sun, Yang Liu, Jie Pan, Fengping Wang, Meng Li

Neelam M. Nathani, Ananya Mitra, Chandrashekar Mootapally, Ramesh K. Kothari

Odilon D. Kaboré, Sylvain Godreuil, Michel Drancourt

Nathan A Ahlgren, Clara A Fuchsman, Gabrielle Rocap, Jed A Fuhrman

Xiyang Dong, Chris Greening, Jayne E. Rattray, Anirban Chakraborty, Maria Chuvochina, Daisuke Mayumi, Jan Dolfing, Carmen Li, James M. Brooks, Bernie B. Bernard, Ryan A. Groves, Ian A. Lewis, Casey R. J. Hubert

Mauro Degli Esposti, Luis Lozano, Esperanza Martínez-Romero

Olivier Pereira, Corentin Hochart, Jean Christophe Auguet, Didier Debroas, Pierre E. Galand

Jamie W Becker, Shane L Hogle, Kali Rosendo, Sallie W Chisholm

María Dolores Ramos-Barbero, Ana-B. Martin-Cuadrado, Tomeu Viver, Fernando Santos, Manuel Martinez-Garcia, Josefa Antón

Braden T. Tierney, Zhen Yang, Jacob M. Luber, Marc Beaudin, Marsha C. Wibowo, Christina Baek, Eleanor Mehlenbacher, Chirag J. Patel, Aleksandar D. Kostic

Lily Momper, Heidi S. Aronson, Jan P. Amend

E D Graham, J F Heidelberg, B J Tully

Benjamin J. Tully, Elaina D. Graham, John F. Heidelberg

Alex L Mitchell, Maxim Scheremetjew, Hubert Denise, Simon Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A Salazar, Sebastien Pesseat, Miguel A Boland, Fiona M I Hunter, Petra ten Hoopen, Blaise Alako, Clara Amid, Darren J Wilkinson, Thomas P Curtis, Guy Cochrane, Robert D Finn

Sandra Wiegand, Mareike Jogler, Christian Jogler

Anna M Floriano, Michele Castelli, Sascha Krenek, Thomas U Berendonk, Chiara Bazzocchi, Giulio Petroni, Davide Sassera

Nathan A M Chrismas, Alexandre M Anesio, Patricia Sánchez-Baracaldo

M. Tangherlini, M. Miralto, C. Colantuono, M. Sangiovanni, A. Dell’ Anno, C. Corinaldesi, R. Danovaro, M. L. Chiusano

2025	Distinct horizontal gene transfer potential of extracellular vesicles versus viral-like particles in marine habitats Nature Communications Steven J. Biller, M. Gray Ryan, Jasmine Li, Andrew Burger, John M. Eppley, Thomas Hackl, Edward F. DeLong
2025	Targeted genomic analysis of a predominant uncultured marine pelagiphage-host model via microfluidics and semipermeable capsule technology ISME Communications Manuel Martinez-Garcia, Monica Lluesma-Gomez, Laura Perez-Martin, Esther Rubio-Portillo, Ana Belen Martin-Cuadrado, Francisco Nadal-Molero, Aitana Escolano-Vico, Fernando Santos Sanchez, Victoria Orphan, Josefa Antón
2024	Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities Nature Communications Nils Giordano, Marinna Gaudin, Camille Trottier, Erwan Delage, Charlotte Nef, Chris Bowler, Samuel Chaffron
2024	Novel, active, and uncultured hydrocarbon-degrading microbes in the ocean Applied and Environmental Microbiology Kathryn L. Howe, Julian Zaugg, Olivia U. Mason
2024	Metagenomic Analysis of Microbial Diversity in the Moroccan Coastal Water of the Gibraltar Strait Water Manal Chrairi, Said Barrijal, Antonio Castellano-Hinojosa, Youssra Boumait, Chahrazade El Hamouti, Afaf Lamzouri, Hassan Ghazal, Rajaa Chahboune
2023	Isolation and Genomics of Futiania mangrovii gen. nov., sp. nov., a Rare and Metabolically Versatile Member in the Class Alphaproteobacteria Microbiology Spectrum Lirui Liu, Wen-Cong Huang, Jie Pan, Jiayi Li, Yuhan Huang, Dayu Zou, Huan Du, Yang Liu, Meng Li
2023	Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis mSystems Kento Tominaga, Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida
2023	Genetic and Structural Diversity of Prokaryotic Ice-Binding Proteins from the Central Arctic Ocean Genes Johanna C. Winder, William Boulton, Asaf Salamov, Sarah Lena Eggers, Katja Metfies, Vincent Moulton, Thomas Mock
2023	Insights into the bacterial and archaeal population dynamics in the deep-sea hydrothermal sediments exposed to lights with different wavelengths Deep Sea Research Part I: Oceanographic Research Papers Ge Liu, Yeqi Shan, Rui Liu, Chaomin Sun
2023	Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59 mSystems Carmen Molina-Pardines, Jose M. Haro-Moreno, Mario López-Pérez
2023	Accurate prediction by AlphaFold2 for ligand binding in a reductive dehalogenase and implications for PFAS (per- and polyfluoroalkyl substance) biodegradation Scientific Reports Hao-Bo Guo, Vanessa A. Varaljay, Gary Kedziora, Kimberly Taylor, Sanaz Farajollahi, Nina Lombardo, Eric Harper, Chia Hung, Marie Gross, Alexander Perminov, Patrick Dennis, Nancy Kelley-Loughnane, Rajiv Berry
2022	A Novel Iridovirus Discovered in Deep-Sea Carnivorous Sponges Viruses Marta Canuti, Gabrielle Large, Joost T. P. Verhoeven, Suzanne C. Dufour
2022	Assessment of Hydrocarbon Degradation Potential in Microbial Communities in Arctic Sea Ice Microorganisms Angela Peeb, Nga Phuong Dang, Marika Truu, Hiie Nõlvak, Chris Petrich, Jaak Truu
2022	Microbial population genomes from the Amazon River reveal possible modulation of the organic matter degradation process in tropical freshwaters Molecular Ecology Célio Dias Santos‐Júnior, Ramiro Logares, Flávio Henrique‐Silva
2022	The Microbiomes of Humans, Animals, Plants, and the Environment Silvia G. Acinas, Marta Sebastián, Isabel Ferrera
2022	Blue Planet, Red and Green Photosynthesis Juan José Pierella Karlusich, Charlotte Nef, Chris Bowler, Richard G. Dorrell
2022	Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria Nature Ecology & Evolution Sergio A. Muñoz-Gómez, Edward Susko, Kelsey Williamson, Laura Eme, Claudio H. Slamovits, David Moreira, Purificación López-García, Andrew J. Roger
2022	The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments Scientific Data Yosuke Nishimura, Susumu Yoshizawa
2022	Diverse Genomic Traits Differentiate Sinking-Particle-Associated versus Free-Living Microbes throughout the Oligotrophic Open Ocean Water Column mBio Andy O. Leu, John M. Eppley, Andrew Burger, Edward F. DeLong
2021	Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities Communications Biology Silvia G. Acinas, Pablo Sánchez, Guillem Salazar, Francisco M. Cornejo-Castillo, Marta Sebastián, Ramiro Logares, Marta Royo-Llonch, Lucas Paoli, Shinichi Sunagawa, Pascal Hingamp, Hiroyuki Ogata, Gipsi Lima-Mendez, Simon Roux, José M. González, Jesús M. Arrieta, Intikhab S. Alam, Allan Kamau, Chris Bowler, Jeroen Raes, Stéphane Pesant, Peer Bork, Susana Agustí, Takashi Gojobori, Dolors Vaqué, Matthew B. Sullivan, Carlos Pedrós-Alió, Ramon Massana, Carlos M. Duarte, Josep M. Gasol
2021	Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning The ISME Journal Elaina D Graham, Benjamin J Tully
2021	Transcriptional activity differentiates families of Marine Group II Euryarchaeota in the coastal ocean ISME Communications Julian Damashek, Aimee Oyinlade Okotie-Oyekan, Scott Michael Gifford, Alexey Vorobev, Mary Ann Moran, James Timothy Hollibaugh
2021	GUNC: detection of chimerism and contamination in prokaryotic genomes Genome Biology Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork
2021	The novel outer membrane protein from OprD/Occ family is associated with hypervirulence of carbapenem resistant Acinetobacter baumannii ST2/KL22 Virulence Mingxi Hua, Jingyuan Liu, Pengcheng Du, Xinzhe Liu, Min Li, Huizhu Wang, Chen Chen, Xinmin Xu, Yu Jiang, Yajie Wang, Hui Zeng, Ang Li
2021	Pacificispira spongiicola gen. nov., sp. nov., a nitrate-reducing bacterium isolated from tropical western Pacific Antonie van Leeuwenhoek Wenxuan He, Yangjie Li, Dechao Zhang
2021	Lifestyle of sponge symbiont phages by host prediction and correlative microscopy The ISME Journal M T Jahn, T Lachnit, S M Markert, C Stigloher, L Pita, M Ribes, B E Dutilh, U Hentschel
2021	A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters PeerJ Clara Jégousse, Pauline Vannier, René Groben, Frank Oliver Glöckner, Viggó Marteinsson
2021	Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage Microbiome Dominique Boeuf, John M. Eppley, Daniel R. Mende, Rex R. Malmstrom, Tanja Woyke, Edward F. DeLong
2021	metaGEM: reconstruction of genome scale metabolic models directly from metagenomes Nucleic Acids Research Francisco Zorrilla, Filip Buric, Kiran R Patil, Aleksej Zelezniak
2021	Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean Nature Microbiology Marta Royo-Llonch, Pablo Sánchez, Clara Ruiz-González, Guillem Salazar, Carlos Pedrós-Alió, Marta Sebastián, Karine Labadie, Lucas Paoli, Federico M. Ibarbalz, Lucie Zinger, Benjamin Churcheward, Marcel Babin, Peer Bork, Emmanuel Boss, Guy Cochrane, Colomban de Vargas, Gabriel Gorsky, Nigel Grimsley, Lionel Guidi, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Nicole Poulton, Jeroen Raes, Christian Sardet, Sabrina Speich, Lars Setmmann, Matthew B. Sullivan, Samuel Chaffron, Damien Eveillard, Eric Karsenti, Shinichi Sunagawa, Patrick Wincker, Lee Karp-Boss, Chris Bowler, Silvia G. Acinas
2020	Light supports cell‐integrity and growth rates of taxonomically diverse coastal photoheterotrophs Environmental Microbiology Nestor Arandia‐Gorostidi, José M. González, Tamara M. Huete‐Stauffer, Mohd I. Ansari, Xosé Anxelu G. Morán, Laura Alonso‐Sáez
2020	Genome-centric resolution of novel microbial lineages in an excavated Centrosaurus dinosaur fossil bone from the Late Cretaceous of North America Environmental Microbiome Renxing Liang, Maggie C. Y. Lau, Evan T. Saitta, Zachary K. Garvin, Tullis C. Onstott
2020	In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes Frontiers in Microbiology Kento Tominaga, Daichi Morimoto, Yosuke Nishimura, Hiroyuki Ogata, Takashi Yoshida
2020	Giant virus diversity and host interactions through global metagenomics Nature Frederik Schulz, Simon Roux, David Paez-Espino, Sean Jungbluth, David A. Walsh, Vincent J. Denef, Katherine D. McMahon, Konstantinos T. Konstantinidis, Emiley A. Eloe-Fadrosh, Nikos C. Kyrpides, Tanja Woyke
2020	Ecogenomics of the SAR11 clade Environmental Microbiology Jose M. Haro‐Moreno, Francisco Rodriguez‐Valera, Riccardo Rosselli, Francisco Martinez‐Hernandez, Juan J. Roda‐Garcia, Monica Lluesma Gomez, Oscar Fornas, Manuel Martinez‐Garcia, Mario López‐Pérez
2020	Perspectives on Cultivation Strategies of Archaea Microbial Ecology Yihua Sun, Yang Liu, Jie Pan, Fengping Wang, Meng Li
2020	Encyclopedia of Marine Biotechnology Neelam M. Nathani, Ananya Mitra, Chandrashekar Mootapally, Ramesh K. Kothari
2020	Planctomycetes as Host-Associated Bacteria: A Perspective That Holds Promise for Their Future Isolations, by Mimicking Their Native Environmental Niches in Clinical Microbiology Laboratories Frontiers in Cellular and Infection Microbiology Odilon D. Kaboré, Sylvain Godreuil, Michel Drancourt
2019	Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes The ISME Journal Nathan A Ahlgren, Clara A Fuchsman, Gabrielle Rocap, Jed A Fuhrman
2019	Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments Nature Communications Xiyang Dong, Chris Greening, Jayne E. Rattray, Anirban Chakraborty, Maria Chuvochina, Daisuke Mayumi, Jan Dolfing, Carmen Li, James M. Brooks, Bernie B. Bernard, Ryan A. Groves, Ian A. Lewis, Casey R. J. Hubert
2019	Current phylogeny of Rhodospirillaceae: A multi-approach study Molecular Phylogenetics and Evolution Mauro Degli Esposti, Luis Lozano, Esperanza Martínez-Romero
2019	Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean MicrobiologyOpen Olivier Pereira, Corentin Hochart, Jean Christophe Auguet, Didier Debroas, Pierre E. Galand
2019	Co-culture and biogeography of Prochlorococcus and SAR11 The ISME Journal Jamie W Becker, Shane L Hogle, Kali Rosendo, Sallie W Chisholm
2019	Recovering microbial genomes from metagenomes in hypersaline environments: The Good, the Bad and the Ugly Systematic and Applied Microbiology María Dolores Ramos-Barbero, Ana-B. Martin-Cuadrado, Tomeu Viver, Fernando Santos, Manuel Martinez-Garcia, Josefa Antón
2019	The Landscape of Genetic Content in the Gut and Oral Human Microbiome Cell Host & Microbe Braden T. Tierney, Zhen Yang, Jacob M. Luber, Marc Beaudin, Marsha C. Wibowo, Christina Baek, Eleanor Mehlenbacher, Chirag J. Patel, Aleksandar D. Kostic
2019	Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns Nature Communications Benjamin J. Tully
2018	Genomic Description of ‘Candidatus Abyssubacteria,’ a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes Frontiers in Microbiology Lily Momper, Heidi S. Aronson, Jan P. Amend
2018	Potential for primary productivity in a globally-distributed bacterial phototroph The ISME Journal E D Graham, J F Heidelberg, B J Tully
2018	The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans Scientific Data Benjamin J. Tully, Elaina D. Graham, John F. Heidelberg
2018	EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies Nucleic Acids Research Alex L Mitchell, Maxim Scheremetjew, Hubert Denise, Simon Potter, Aleksandra Tarkowska, Matloob Qureshi, Gustavo A Salazar, Sebastien Pesseat, Miguel A Boland, Fiona M I Hunter, Petra ten Hoopen, Blaise Alako, Clara Amid, Darren J Wilkinson, Thomas P Curtis, Guy Cochrane, Robert D Finn
2018	On the maverick Planctomycetes FEMS Microbiology Reviews Sandra Wiegand, Mareike Jogler, Christian Jogler
2018	The Genome Sequence of “Candidatus Fokinia solitaria”: Insights on Reductive Evolution in Rickettsiales Genome Biology and Evolution Anna M Floriano, Michele Castelli, Sascha Krenek, Thomas U Berendonk, Chiara Bazzocchi, Giulio Petroni, Davide Sassera
2018	The future of genomics in polar and alpine cyanobacteria FEMS Microbiology Ecology Nathan A M Chrismas, Alexandre M Anesio, Patricia Sánchez-Baracaldo
2018	GLOSSary: the GLobal Ocean 16S subunit web accessible resource BMC Bioinformatics M. Tangherlini, M. Miralto, C. Colantuono, M. Sangiovanni, A. Dell’ Anno, C. Corinaldesi, R. Danovaro, M. L. Chiusano
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