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Apoorva Prabhu, Julian Zaugg, Cheong Xin Chan, Simon J. McIlroy, Chris Rinke

Carolin Charlotte Wendling, Marie Vasse, Sébastien Wielgoss

Dean Vik, Benjamin Bolduc, Simon Roux, Christine L Sun, Akbar Adjie Pratama, Mart Krupovic, Matthew B Sullivan

Bu Xu, Lu Fan, Wenxiu Wang, Yuanqing Zhu, Chuanlun Zhang

Yifan Zhou, Liang Zhou, Shuling Yan, Lanming Chen, Mart Krupovic, Yongjie Wang

Ran Li, Yongming Wang, Han Hu, Yan Tan, Yingfei Ma

Ying-Li Zhou, Paraskevi Mara, Dean Vik, Virginia P. Edgcomb, Matthew B. Sullivan, Yong Wang

Sophie K Jurgensen, Simon Roux, Sarah M Schwenck, Frank J Stewart, Matthew B Sullivan, Jennifer R Brum

Francisco Martinez-Hernandez, Awa Diop, Inmaculada Garcia-Heredia, Louis-Marie Bobay, Manuel Martinez-Garcia

Eric G. Sakowski, Keith Arora-Williams, Funing Tian, Ahmed A. Zayed, Olivier Zablocki, Matthew B. Sullivan, Sarah P. Preheim

Ying Liu, Tatiana A. Demina, Simon Roux, Pakorn Aiewsakun, Darius Kazlauskas, Peter Simmonds, David Prangishvili, Hanna M. Oksanen, Mart Krupovic

Jiarong Guo, Ben Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Dominguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux

Jennifer Wirth, Jacob H. Munson-McGee, Mark J. Young

Andrew M. Long, Sophie K. Jurgensen, Ariel R. Petchel, Emily R. Savoie, Jennifer R. Brum

Janina Rahlff, Victoria Turzynski, Sarah P. Esser, Indra Monsees, Till L. V. Bornemann, Perla Abigail Figueroa-Gonzalez, Frederik Schulz, Tanja Woyke, Andreas Klingl, Cristina Moraru, Alexander J. Probst

Benjamin Bolduc, Olivier Zablocki, Jiarong Guo, Ahmed A Zayed, Dean Vik, Paramvir Dehal, Elisha M Wood-Charlson, Adam Arkin, Nirav Merchant, Jennifer Pett-Ridge, Simon Roux, Matthew Vaughn, Matthew B Sullivan

Felipe Hernandes Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert Edwards, Francisco Rodriguez-Valera

Clara A. Fuchsman, Michael C. G. Carlson, David Garcia Prieto, Matthew D. Hays, Gabrielle Rocap

Dean Vik, Maria Consuelo Gazitúa, Christine L. Sun, Ahmed A. Zayed, Montserrat Aldunate, Margaret R. Mulholland, Osvaldo Ulloa, Matthew B. Sullivan

Cristina Howard-Varona, Morgan M Lindback, G Eric Bastien, Natalie Solonenko, Ahmed A Zayed, HoBin Jang, Bill Andreopoulos, Heather M Brewer, Tijana Glavina del Rio, Joshua N Adkins, Subhadeep Paul, Matthew B Sullivan, Melissa B Duhaime

Paraskevi Mara, Dean Vik, Maria G Pachiadaki, Elizabeth A Suter, Bonnie Poulos, Gordon T Taylor, Matthew B Sullivan, Virginia P Edgcomb

Kristina A. Kigerl, Kylie Zane, Kia Adams, Matthew B. Sullivan, Phillip G. Popovich

Gur Hevroni, José Flores-Uribe, Oded Béjà, Alon Philosof

Ann C. Gregory, Olivier Zablocki, Ahmed A. Zayed, Allison Howell, Benjamin Bolduc, Matthew B. Sullivan

Ho Bin Jang, Benjamin Bolduc, Olivier Zablocki, Jens H. Kuhn, Simon Roux, Evelien M. Adriaenssens, J. Rodney Brister, Andrew M Kropinski, Mart Krupovic, Rob Lavigne, Dann Turner, Matthew B. Sullivan

Ken Youens-Clark, Matt Bomhoff, Alise J Ponsero, Elisha M Wood-Charlson, Joshua Lynch, Illyoung Choi, John H Hartman, Bonnie L Hurwitz

Nathan A Ahlgren, Clara A Fuchsman, Gabrielle Rocap, Jed A Fuhrman

Carolina M. Mizuno, Bina Prajapati, Soizick Lucas‐Staat, Telesphore Sime‐Ngando, Patrick Forterre, Dennis H. Bamford, David Prangishvili, Mart Krupovic, Hanna M. Oksanen

Mario López‐Pérez, Jose M. Haro‐Moreno, José R. de la Torre, Francisco Rodriguez‐Valera

Cyril Alexander Frantzen, Helge Holo

F. H. Coutinho, R. A. Edwards, F. Rodríguez-Valera

Alyson E. Santoro, R. Alexander Richter, Christopher L. Dupont

Mart Krupovic, Kira S. Makarova, Yuri I. Wolf, Sofia Medvedeva, David Prangishvili, Patrick Forterre, Eugene V. Koonin

Gareth Trubl, Ho Bin Jang, Simon Roux, Joanne B. Emerson, Natalie Solonenko, Dean R. Vik, Lindsey Solden, Jared Ellenbogen, Alexander T. Runyon, Benjamin Bolduc, Ben J. Woodcroft, Scott R. Saleska, Gene W. Tyson, Kelly C. Wrighton, Matthew B. Sullivan, Virginia I. Rich

Jacob Munson-McGee, Jamie Snyder, Mark Young

Mya Breitbart, Chelsea Bonnain, Kema Malki, Natalie A. Sawaya

Mart Krupovic, Virginija Cvirkaite-Krupovic, Jaime Iranzo, David Prangishvili, Eugene V. Koonin

2025	Insights Into Phylogeny, Diversity and Functional Potential of Poseidoniales Viruses Environmental Microbiology Apoorva Prabhu, Julian Zaugg, Cheong Xin Chan, Simon J. McIlroy, Chris Rinke
2025	Phage quest: a beginner’s guide to explore viral diversity in the prokaryotic world Briefings in Bioinformatics Carolin Charlotte Wendling, Marie Vasse, Sébastien Wielgoss
2023	MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets ISME Communications Dean Vik, Benjamin Bolduc, Simon Roux, Christine L Sun, Akbar Adjie Pratama, Mart Krupovic, Matthew B Sullivan
2023	Diversity, distribution, and functional potentials of magroviruses from marine and brackish waters Frontiers in Microbiology Bu Xu, Lu Fan, Wenxiu Wang, Yuanqing Zhu, Chuanlun Zhang
2023	Diverse viruses of marine archaea discovered using metagenomics Environmental Microbiology Yifan Zhou, Liang Zhou, Shuling Yan, Lanming Chen, Mart Krupovic, Yongjie Wang
2022	Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut Nature Communications Ran Li, Yongming Wang, Han Hu, Yan Tan, Yingfei Ma
2022	Ecogenomics reveals viral communities across the Challenger Deep oceanic trench Communications Biology Ying-Li Zhou, Paraskevi Mara, Dean Vik, Virginia P. Edgcomb, Matthew B. Sullivan, Yong Wang
2022	Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state The ISME Journal Sophie K Jurgensen, Simon Roux, Sarah M Schwenck, Frank J Stewart, Matthew B Sullivan, Jennifer R Brum
2022	Unexpected myriad of co-occurring viral strains and species in one of the most abundant and microdiverse viruses on Earth The ISME Journal Francisco Martinez-Hernandez, Awa Diop, Inmaculada Garcia-Heredia, Louis-Marie Bobay, Manuel Martinez-Garcia
2021	Interaction dynamics and virus–host range for estuarine actinophages captured by epicPCR Nature Microbiology Eric G. Sakowski, Keith Arora-Williams, Funing Tian, Ahmed A. Zayed, Olivier Zablocki, Matthew B. Sullivan, Sarah P. Preheim
2021	Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes PLOS Biology Ying Liu, Tatiana A. Demina, Simon Roux, Pakorn Aiewsakun, Darius Kazlauskas, Peter Simmonds, David Prangishvili, Hanna M. Oksanen, Mart Krupovic
2021	VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses Microbiome Jiarong Guo, Ben Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Dominguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
2021	Encyclopedia of Virology Jennifer Wirth, Jacob H. Munson-McGee, Mark J. Young
2021	Microbial Ecology of Oxygen Minimum Zones Amidst Ocean Deoxygenation Frontiers in Microbiology Andrew M. Long, Sophie K. Jurgensen, Ariel R. Petchel, Emily R. Savoie, Jennifer R. Brum
2021	Lytic archaeal viruses infect abundant primary producers in Earth’s crust Nature Communications Janina Rahlff, Victoria Turzynski, Sarah P. Esser, Indra Monsees, Till L. V. Bornemann, Perla Abigail Figueroa-Gonzalez, Frederik Schulz, Tanja Woyke, Andreas Klingl, Cristina Moraru, Alexander J. Probst
2021	iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology ISME Communications Benjamin Bolduc, Olivier Zablocki, Jiarong Guo, Ahmed A Zayed, Dean Vik, Paramvir Dehal, Elisha M Wood-Charlson, Adam Arkin, Nirav Merchant, Jennifer Pett-Ridge, Simon Roux, Matthew Vaughn, Matthew B Sullivan
2021	RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content Patterns Felipe Hernandes Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert Edwards, Francisco Rodriguez-Valera
2021	Cyanophage host‐derived genes reflect contrasting selective pressures with depth in the oxic and anoxic water column of the Eastern Tropical North Pacific Environmental Microbiology Clara A. Fuchsman, Michael C. G. Carlson, David Garcia Prieto, Matthew D. Hays, Gabrielle Rocap
2021	Genome‐resolved viral ecology in a marine oxygen minimum zone Environmental Microbiology Dean Vik, Maria Consuelo Gazitúa, Christine L. Sun, Ahmed A. Zayed, Montserrat Aldunate, Margaret R. Mulholland, Osvaldo Ulloa, Matthew B. Sullivan
2020	Phage-specific metabolic reprogramming of virocells The ISME Journal Cristina Howard-Varona, Morgan M Lindback, G Eric Bastien, Natalie Solonenko, Ahmed A Zayed, HoBin Jang, Bill Andreopoulos, Heather M Brewer, Tijana Glavina del Rio, Joshua N Adkins, Subhadeep Paul, Matthew B Sullivan, Melissa B Duhaime
2020	Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline The ISME Journal Paraskevi Mara, Dean Vik, Maria G Pachiadaki, Elizabeth A Suter, Bonnie Poulos, Gordon T Taylor, Matthew B Sullivan, Virginia P Edgcomb
2020	The spinal cord-gut-immune axis as a master regulator of health and neurological function after spinal cord injury Experimental Neurology Kristina A. Kigerl, Kylie Zane, Kia Adams, Matthew B. Sullivan, Phillip G. Popovich
2020	Seasonal and diel patterns of abundance and activity of viruses in the Red Sea Proceedings of the National Academy of Sciences Gur Hevroni, José Flores-Uribe, Oded Béjà, Alon Philosof
2020	Advances in Virus Research
2020	The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut Cell Host & Microbe Ann C. Gregory, Olivier Zablocki, Ahmed A. Zayed, Allison Howell, Benjamin Bolduc, Matthew B. Sullivan
2019	Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks Nature Biotechnology Ho Bin Jang, Benjamin Bolduc, Olivier Zablocki, Jens H. Kuhn, Simon Roux, Evelien M. Adriaenssens, J. Rodney Brister, Andrew M Kropinski, Mart Krupovic, Rob Lavigne, Dann Turner, Matthew B. Sullivan
2019	iMicrobe: Tools and data-driven discovery platform for the microbiome sciences GigaScience Ken Youens-Clark, Matt Bomhoff, Alise J Ponsero, Elisha M Wood-Charlson, Joshua Lynch, Illyoung Choi, John H Hartman, Bonnie L Hurwitz
2019	Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes The ISME Journal Nathan A Ahlgren, Clara A Fuchsman, Gabrielle Rocap, Jed A Fuhrman
2019	Novel haloarchaeal viruses from Lake Retba infecting Haloferax and Halorubrum species Environmental Microbiology Carolina M. Mizuno, Bina Prajapati, Soizick Lucas‐Staat, Telesphore Sime‐Ngando, Patrick Forterre, Dennis H. Bamford, David Prangishvili, Mart Krupovic, Hanna M. Oksanen
2019	Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes Environmental Microbiology Mario López‐Pérez, Jose M. Haro‐Moreno, José R. de la Torre, Francisco Rodriguez‐Valera
2019	Unprecedented Diversity of Lactococcal Group 936 Bacteriophages Revealed by Amplicon Sequencing of the Portal Protein Gene Viruses Cyril Alexander Frantzen, Helge Holo
2019	Charting the diversity of uncultured viruses of Archaea and Bacteria BMC Biology F. H. Coutinho, R. A. Edwards, F. Rodríguez-Valera
2019	Planktonic Marine Archaea Annual Review of Marine Science Alyson E. Santoro, R. Alexander Richter, Christopher L. Dupont
2019	Integrated mobile genetic elements in Thaumarchaeota Environmental Microbiology Mart Krupovic, Kira S. Makarova, Yuri I. Wolf, Sofia Medvedeva, David Prangishvili, Patrick Forterre, Eugene V. Koonin
2018	Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing mSystems Gareth Trubl, Ho Bin Jang, Simon Roux, Joanne B. Emerson, Natalie Solonenko, Dean R. Vik, Lindsey Solden, Jared Ellenbogen, Alexander T. Runyon, Benjamin Bolduc, Ben J. Woodcroft, Scott R. Saleska, Gene W. Tyson, Kelly C. Wrighton, Matthew B. Sullivan, Virginia I. Rich
2018	Archaeal Viruses from High-Temperature Environments Genes Jacob Munson-McGee, Jamie Snyder, Mark Young
2018	Phage puppet masters of the marine microbial realm Nature Microbiology Mya Breitbart, Chelsea Bonnain, Kema Malki, Natalie A. Sawaya
2018	Viruses of archaea: Structural, functional, environmental and evolutionary genomics Virus Research Mart Krupovic, Virginija Cvirkaite-Krupovic, Jaime Iranzo, David Prangishvili, Eugene V. Koonin
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