A simple electroelution method for rapid protein purification: isolation and antibody production of alpha toxin from Clostridium septicum

Bacterial strain media and culture conditions

Culture of C. septicum was grown anaerobically at optimum temperature for 7 h in specific medium composed of peptones, proteins, glucose and purified water at pH 7.2. Culture supernatant was harvested by centrifuging the cultures at 1,500 g for 30 min at 4 °C.

Gel electrophoresis and immunoblot procedures

Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (Laemmli, 1970) in a 7–10% resolving gel. All samples were diluted into sample buffer that contained 5% β-mercaptoethanol and then heated at 95°C for 5 min. Gels were either Coomassie Brilliant Blue R-250 or Oriole™ stained, or blotted. Native-PAGE discontinuous gel electrophoresis was performed in a 6% resolving gel. Gel and reservoir buffer did not contain SDS. The sample was prepared in sample buffer without β-mercaptoethanol, SDS or heating. Samples were loaded and an appropriate voltage was stetted (normally 180 V approximately 1 h) to run the electrophoresis.

For immunoblot analysis, proteins that were separated by SDS-PAGE or Native-PAGE were transferred onto polyvinylidene difluoride (PVDF) membranes (Immobilo-P; Merck Millipore, Darmstadt, Germany) according to the manufacturer’s protocols. After transfer, PVDF membranes were blocked with 5% non-fat dry milk in PBS-0.1% Tween 20 (blocking solution). After 60 min, the primary antibodies were diluted in blocking solution and added to the PVDF membrane. After one hour and half incubation at room temperature, the blot was washed three times for 5 min each time with blot wash buffer (PBS-0.1% Tween 20) to remove unbound antibody. The blot was then incubated for 45 min with the appropriate secondary conjugate antibody (Anti-Rabbit IgG (whole molecule)-Alkaline Phosphatase-A3812; Sigma-Aldrich, St. Louis, MO, USA) diluted 1:15,000 in blocking solution. The bands recognized by the primary antibody were visualized by using a BCIP/NBT substrate (Roche Pharma, Madrid, Spain), according to manufacturer’s instructions, for 5 min to allow colour development. Blots were digitized with a calibrated densitometer (GS-800; Bio-Rad, Madrid, Spain) and images were analyzed with Quantity One 4.4.1 software (Bio-Rad, Madrid, Spain).

Identification of bands by mass spectrometry

For identification, protein bands were cut out from Oriole™ stained gels and destained sequentially with ammonium bicarbonate (AmBic) 25 mM and 50% ACN/AmBic 25 mM. Proteins were reduced by treatment with 10 mM DTT (dithiothreitol) for 1 h at 56 °C, and alkylated with 55 mM IAA (iodoacetamida) for 30 min at room temperature. Samples were dried and digested with 40 ng of modified porcine trypsin (Promega Biotech, Madrid, Spain) in 25 mM AmBic at 37 °C overnight. After digestion, peptides were eluted first with 0.5% (v/v) TFA for 30 min at room temperature and second with 100% (v/v) ACN (acetonitrile) for 15 min at 37 °C. Finally 3 µL of digests were applied onto a disposable Anchorchip™ MTP-sized MALDI target prespotted with HCCA (α-cyano-4-hydroxycinnamic acid) matrix (Bruker Daltonics, Madrid, Spain), and analyzed by matrix-assisted laser desorption/ionization-time of flight tandem mass spectrometry (MALDI-TOF/TOF) with an Autoflex III smartbeam (Bruker Daltonics, Madrid, Spain) in positive ion reflector mode. Samples were also analyzed by high-performance liquid-chromatography (HPLC), with an UltiMate3000 (Dionex), coupled to a FTICR Apex-Qe (Bruker Daltonics, Madrid, Spain) to perform nano-electrospray fourier transform ion cyclotron resonance mass spectrometry (nESI-FTICR). Data were generated in PKL and mgf file formats with FlexAnalysis 3.0 and DataAnalysis 4.0 softwares (Bruker Daltonics, Madrid, Spain), for MALDI-TOF/TOF and HPLC-nESI-FTICR methods respectively, and then submitted for database searching against SwissProt 56.6 (405506 sequences; 146166984 residues) and NCBInr 20070216 (4626804 sequences; 1596079197 residues) databases by BioTools 3.0 software (Bruker Daltonics, Madrid, Spain) through the version 2.2.04 of MASCOT search engine (Matrix Science, London, UK). Search parameters were set as follows: taxonomy Bacteria/Firmicutes; enzyme trypsin; allowance of one missed cleavage site; carbamidomethyl of cysteine as fixed modification; oxidation of methionine as variable modification; monoisotopic mass values; 100 ppm (MALDI) or 6 ppm (ESI) of mass tolerance for precursor ions; 0.5 Da (MALDI) or 0.01 Da (ESI) of mass tolerance for fragment ions and protein mass unrestricted.

Electroelution device and procedure

After separation by SDS-PAGE in four 7% resolving gels of 1.5 mm, the band representing the high-molecular-weight complex was excised from the gel using a sharp disposable blade and subjected to electroelution in the presence of SDS by using an electroeluter (Model 422; Bio-Rad, Madrid, Spain). Proteins were electroeluted for 3 h at room temperature using elution buffer (25 mM Tris–HCl, pH 8.3, 192 mM glycine, containing 0.1% (w/v) SDS), following the manufacturer’s instructions. In order to remove SDS from the preparation, the elution procedure was continued for another 2 h using fresh elution buffer without SDS. After that, the protein was recovered in a minimal amount of the same buffer and concentrated using an Amicon®Ultra-15 (Ultracel®-10K; Merck Millipore, Darmstadt, Germany). The purity of protein was checked by SDS–PAGE and the presence of protein complexes was analyzed by 7% SDS-PAGE. The identity of the purified protein was confirmed by mass spectrometry.

Protein estimation

The concentration of soluble proteins was determined according to the method of Bradford (1976).The optical density was read at 595 nm and the amount of protein was calculated by using BSA (Sigma Aldrich, Madrid, Spain) as standard.

Rabbit polyclonal antibody production

Three New Zealand White rabbits were injected five times subcutaneously with 100 μg of purified alpha toxin oligomer of C. septicum and a water soluble adjuvant (incomplete Freund’s adjuvant). The first dose was double following a co-injection protocol (two consecutive injections, one on each side of the belly). The third, fourth and fifth injections were performed every two weeks. Two months after the initial immunization the animals, properly anesthetized with ketamine plus xylacina, were bled by cardiac puncture. The blood was allowed to clot for 24 h at 4 °C, and the serum was collected after centrifugation. Euthanasia of anesthetized animals was for cerebral concussion (blunt blow to the head). Before removing the bodies, cessation of vital signs and appearance of rigor mortis was tested. Daily monitoring protocol per animal was covered, using the proposed model by Morton & Griffiths (1985). The supervision protocol establishes recommendations of analgesia and endpoint application. It can be said that it was not necessary in any case because no animal got a score > 5 monitoring protocols. Although endpoint criteria were established, it was not necessary to apply.

All experiments were performed under the guidelines of the European Community for animal use for scientific purpose (2010/60/UE). The handling procedures and sampling frequency were designed to reduce stress and health risks for subjects according to Spanish laws (RD53/2013). Favourable report from the Ethics Committee of Animal Welfare was obtained and was notified as required by current legislation (RD 1201/2005). The antibody was produced by CZ Veterinaria S.A. (36400 Porriño-Pontevedra; Spain).

Immunoblot analysis were made for evaluation of antibody specificity Sample of protein purified and indentified as alpha toxin of C. septicum was used for this assay and was consider a positive control.

Slot blot immunoassay

For slot blotting, 0.2 mL of each sample was applied to a slot blot manifold Bio-Dot SF 48 well slot format apparatus (Bio-Rad, Madrid, Spain) and drawn by vacuum through a pre-wetted polyvinylidene fluoride (PVDF) membrane. Unbound membrane sites were blocked for 1 h with 5% non-fat dry milk in PBS containing 0.1% Tween-20 (blocking solution), and the membrane was then incubated 90 min at room temperature with a 1:10,000 dilution of rabbit anti-C. septicum alpha toxin antiserum diluted in blocking solution. The membrane was washed three times with blot wash buffer (PBS-0.1% Tween 20), and incubated 45 min at room temperature with a 1:15,000 dilution of alkaline phosphatase-conjugated goat anti-rabbit immunoglobulin G (Sigma Aldrich, Madrid, Spain) diluted in blot wash buffer. Again, the membrane was washed three times with blot wash buffer. Bands were visualized using BCIP/NBT (Roche Pharma, Madrid, Spain), according to the manufacturer’s instructions. Blots were digitized with a calibrated densitometer (GS-800; Bio-Rad, Madrid, Spain) and the intensity of each band on the slot blot was measured using Quantity One 4.4.1 software (Bio-Rad, Madrid, Spain). A four-parameter logistic function (4PL) was used for calculating the alpha toxin concentration (Wild, 2013) using the MaterPlex Reader Fit software (MiraiBio Group; Analysis Software for the Life Sciences; Hitachi Solutions America, Ltd., San Bruno, CA, USA).

Identification of Clostridium septicum alpha toxin protein

Proteins secreted into extracellular medium by C. septicum were separated according to their molecular mass by SDS-PAGE as described above (Fig. 1). The most abundant bands were cut off the gel and submitted to mass spectrometry analysis for protein identification. The identity of proteins achieved either by MALDI-TOF/TOF or HPLC-nESI-FTICR is summarized in Table 1. The protein profile analyses of samples revealed the presence of different proteins, all of them belonging to C. septicum. Three of them were identified as C. septicum alpha toxin: a high molecular weight protein (greater than 200 kDa) and two proteins of about 49 kDa and 43 kDa (see Fig. 1A: band 1, 10 and 11, respectively).

We also analyzed the protein profile of C. septicum secreted proteins by Native-PAGE (6% resolving gel), in order to test the alpha toxin in its native state. As shown in Fig. 1B, after Coomassie Brilliant Blue R-250 stain, a clear band greater than 260 kDa was observed (band 17). This band was identified by mass spectrometry as C. septicum alpha toxin and we concluded that corresponds to its oligomeric form. The few protein bands observed between 260 and 95 kDa molecular weight range (see Fig. 1A) appeared as a faint smear in native conditions (Fig. 1B).

Purification of alpha toxin oligomer for polyclonal antibodies production

For antibody production, the band corresponding to the alpha toxin oligomeric form (band 1) was excised from the gel after resolving secreted proteins of C. septicum by SDS-PAGE. Protein purification was carried out through the active elution from gel pieces using the electroelution device as described in ‘Material and Methods’ section. Analytical electrophoresis of the electroeluted protein was performed in order to confirm the purity of the alpha toxin (Fig. S1). After electroelution the purified alpha toxin was concentrated by Amicon®Ultra-15, yielding approximately 2.5 mg of total alpha toxin. About 0.5 mg of purified protein was injected into each rabbit and after two months the animals were bled.

Evaluation of the Clostridium septicum alpha toxin polyclonal antibodies by western-blot technique

For evaluation of antibody specificity, the anti-C. septicum alpha toxin rabbit antiserum was subjected to immunoblot analyses. Samples of proteins secreted by C. septicum culture were used for these assays. As shown in Fig. 2A, the antiserum detected two bands of approximately 43 kDa and a higher band greater than 200 kDa. We also tested the antiserum under native conditions, detecting a strong smear over 200 kDa (Fig. 2B). In addition, we also evaluated the result obtained with the C. septicum antitoxin antiserum purchased from NIBSC and we could prove that this second antibody recognized a lot of non-specific proteins (Fig. 2C). Finally, we assessed the specificity of our antibody regarding other Clostridium spp. extracellular culture samples: C. perfringens type D, C. haemolyticum, C. tetani and C. sordellii and interestingly no reaction was observed (Fig. 3).

Evaluation of the Clostridium septicum alpha toxin polyclonal antibodies by slot-blot technique

In order to evaluate the efficacy of the antibody to recognize the purified toxin, we used the slot-blot technique. The oligomeric form of alpha toxin was purified as mentioned in ‘Materials and Methods’ and concentrated up to 62 µg/mL, which was used as starting solution to generate protein loadings ranging from 13 ng/mL to 207 ng/mL. As shown in Fig. 4A, the intensities of the blot decrease proportionally with decreasing concentrations of alpha toxin. Figure 4B shows that the concentration of the antigen plotted on x axis is proportional to the OD values (y axis). A linear relationship between optical density and protein concentration was verified by linear regression analyses, which gave a correlation coefficient of 0.9931 (from 13 ng/mL to 124 ng/mL). The 4-parameter logistic (4PL) model was used for the calibration curve fitting. The curve demonstrates a very good fitting, as revealed by R² = 0.995, with all concentrations of purified alpha toxin assayed (Fig. 4C). We also tested the specificity of this antibody with the culture medium and PBS and no specific binding was detected (Fig. 4A).