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2024	CRISPR genotyping methods: Tracing the evolution from spoligotyping to machine learning Biochimie P. Muzyukina, O. Soutourina
2024	Salmonella - Perspectives for Low-Cost Prevention, Control and Treatment Ruimin Gao, Jasmine Rae Frost
2023	A Glimpse at the Anti-Phage Defenses Landscape in the Foodborne Pathogen Salmonella enterica subsp. enterica serovar Typhimurium Viruses Cedric Woudstra, Sophie A. Granier
2023	The Phylogenetic Study of the CRISPR-Cas System in Enterobacteriaceae Current Microbiology Simran Krishnakant Kushwaha, Aryahi A. Kumar, Hardik Gupta, Sandhya Amol Marathe
2023	SALMONELLA CRISPR-Cas SİSTEMİ’NİN TEMEL ÖZELLİKLERİ Veteriner Farmakoloji ve Toksikoloji Derneği Bülteni Özge ERDOĞAN
2022	Clustered Regularly Interspaced Short Palindromic Repeats-Cas System: Diversity and Regulation In Enterobacteriaceae Future Microbiology Simran K Kushwaha, Lakshmi P Narasimhan, Chandrananthi Chithananthan, Sandhya A Marathe
2021	Whole-genome sequencing analysis and CRISPR genotyping of rare antibiotic-resistant Salmonella enterica serovars isolated from food and related sources Food Microbiology Daniel F.M. Monte, Matthew A. Nethery, Rodolphe Barrangou, Mariza Landgraf, Paula J. Fedorka-Cray
2021	Survival of Salmonella Under Heat Stress is Associated with the Presence/Absence of CRISPR Cas Genes and Iron Levels Current Microbiology Amreeta Sarjit, Joshua T. Ravensdale, Ranil Coorey, Narelle Fegan, Gary A. Dykes
2020	Occurrence and Diversity of CRISPR Loci in Lactobacillus casei Group Frontiers in Microbiology Lan Yang, Weixun Li, Obaroakpo Joy Ujiroghene, Yang Yang, Jing Lu, Shuwen Zhang, Xiaoyang Pang, Jiaping Lv
2020	MLST based serotype prediction for the accurate identification of non typhoidal Salmonella serovars Molecular Biology Reports Jobin John Jacob, Tanya Rachel, Baby Abirami Shankar, Karthik Gunasekaran, Ramya Iyadurai, Shalini Anandan, Balaji Veeraraghavan
2020	The phylogenomics of CRISPR-Cas system and revelation of its features in Salmonella Scientific Reports Simran Krishnakant Kushwaha, Narra Lakshmi Sai Bhavesh, Bahaa Abdella, Chandrajit Lahiri, Sandhya Amol Marathe
2020	A nineteen-year report of serotype and antimicrobial susceptibility of enteric non-typhoidal Salmonella from humans in Southern India: changing facades of taxonomy and resistance trend Gut Pathogens Jobin John Jacob, Dhanalakshmi Solaimalai, Dhiviya Prabaa Muthuirulandi Sethuvel, Tanya Rachel, Praveena Jeslin, Shalini Anandan, Balaji Veeraraghavan
2019	CSESA: an R package to predict Salmonella enterica serotype based on newly incorporated spacer pairs of CRISPR BMC Bioinformatics Lang Yang, Xia Zhang, Yuqi Liu, Hao Li, Shaofu Qiu, Peng Li, Hongbin Song
2019	The speciation and hybridization history of the genus Salmonella Microbial Genomics Alexis Criscuolo, Sylvie Issenhuth-Jeanjean, Xavier Didelot, Kaisa Thorell, James Hale, Julian Parkhill, Nicholas R. Thomson, François-Xavier Weill, Daniel Falush, Sylvain Brisse
2019	Independent Microevolution Mediated by Mobile Genetic Elements of Individual Clostridium difficile Isolates from Clade 4 Revealed by Whole-Genome Sequencing mSystems Yuan Wu, Chen Liu, Wen-Ge Li, Jun-Li Xu, Wen-Zhu Zhang, Yi-Fei Dai, Jin-Xing Lu
2018	Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association Microbial Genomics Scott V. Nguyen, Dayna M. Harhay, James L. Bono, Timothy P. L. Smith, Patricia I. Fields, Blake A. Dinsmore, Monica Santovenia, Rong Wang, Joseph M. Bosilevac, Gregory P. Harhay
2018	The CRISPR-Cas system in Enterobacteriaceae Pathogens and Disease Liliana Medina-Aparicio, Sonia Dávila, Javier E Rebollar-Flores, Edmundo Calva, Ismael Hernández-Lucas
2018	New Insights Into Functions and Possible Applications of Clostridium difficile CRISPR-Cas System Frontiers in Microbiology Anna Maikova, Konstantin Severinov, Olga Soutourina
2017	Diversity and microevolution of CRISPR loci in Helicobacter cinaedi PLOS ONE Junko Tomida, Yuji Morita, Keigo Shibayama, Ken Kikuchi, Tomohiro Sawa, Takaaki Akaike, Yoshiaki Kawamura
2017	CRISPR-Cas Technologies and Applications in Food Bacteria Annual Review of Food Science and Technology Emily Stout, Todd Klaenhammer, Rodolphe Barrangou
2017	Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles Scientific Reports Songzhe Fu, Lester Hiley, Sophie Octavia, Mark M. Tanaka, Vitali Sintchenko, Ruiting Lan
2016	CRISPR Diversity and Microevolution inClostridium difficile Genome Biology and Evolution Joakim M. Andersen, Madelyn Shoup, Cathy Robinson, Robert Britton, Katharina E.P. Olsen, Rodolphe Barrangou
2016	Food Safety Risks from Wildlife Anita Wright, Amber Ginn, Zhiyao Luo
2016	CRISPR-Based Typing and Next-Generation Tracking Technologies Annual Review of Food Science and Technology Rodolphe Barrangou, Edward G. Dudley
2016	Behavior variability of Salmonella enterica isolates from meat-related sources LWT Huhu Wang, Yun Jiang, Xuan Liu, Wenjuan Qian, Xinglian Xu, Guanghong Zhou
2015	CRISPR-cas Subtype I-Fb in Acinetobacter baumannii: Evolution and Utilization for Strain Subtyping PLOS ONE Nabil Karah, Ørjan Samuelsen, Raffaele Zarrilli, Jason W. Sahl, Sun Nyunt Wai, Bernt Eric Uhlin
2015	Characterization and evolution of Salmonella CRISPR-Cas systems Microbiology Nikki Shariat, Ruth E. Timme, James B. Pettengill, Rodolphe Barrangou, Edward G. Dudley
2015	Differential Distribution of Type II CRISPR-Cas Systems in Agricultural and NonagriculturalCampylobacter coliandCampylobacter jejuniIsolates Correlates with Lack of Shared Environments Genome Biology and Evolution Bruce M. Pearson, Rogier Louwen, Peter van Baarlen, Arnoud H.M. van Vliet
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