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2025
Dead or Alive? Challenges in Discriminating Dietary From Host‐Associated Community via RNA and DNA Metabarcoding in a Filter Feeder
Environmental DNA
2025
Integrating traditional and innovative monitoring approaches to monitor the marine biodiversity in the Tyrrhenian Sea (Mediterranean sea)
Marine Environmental Research
2025
Environmental RNA as a transformative tool for aquatic ecosystem health assessment: progress and challenges
Ecological Indicators
2025
Release and Degradation of Environmental DNA and RNA From Eels in Aotearoa New Zealand
Environmental DNA
2025
Microbial, holobiont, and Tree of Life eDNA/eRNA for enhanced ecological assessment
Trends in Microbiology
2025
Eddy dipole differentially influences particle‐associated and water column protistan community composition
Limnology and Oceanography
2025
Integration of “Omics”-Based Approaches in Environmental Risk Assessment to Establish Cause and Effect Relationships: A Review
Toxics
2025
eDNA- and eRNA-Based Detection of 2-Methylisoborneol-Producing Cyanobacteria and Intracellular Synthesis Dynamics in Freshwater Ecosystem
Biology
2025
Comparing eDNA and eRNA Sampling Methodologies From Pond Environments
Aquatic Conservation: Marine and Freshwater Ecosystems
2024
Environmental RNA metabarcoding for ballast water microbial diversity: Minimizing false positives
Science of The Total Environment
2024
Marine sediment infauna‐based environmental assessment using metabarcoding identifies potential impact indicator species
Environmental DNA
2024
Microbiome origin and stress-related changes in bacterial abundance of the photosymbiotic sea slug Berghia stephanieae (Á. Valdés, 2005)
Symbiosis
2024
A comparison of visual and molecular methods for inferring biological communities in aquaculture enriched sediments - Impact assessment and cost-benefit analysis
Marine Pollution Bulletin
2024
Solving freshwater conservation challenges through next-generation sequencing approaches
Environmental Science: Advances
2024
Towards a Standardized Operating Procedure for eDNA‐Based Biomonitoring in Coastal Marine Salmon Aquaculture
Environmental DNA
2024
Environmental DNA–RNA dynamics provide insights for effective monitoring of marine invasive species
Environmental DNA
2024
Haven or hell? A perspective on the ecology of offshore oil and gas platforms
PLOS Sustainability and Transformation
2024
New prospects of environmental RNA metabarcoding research in biological diversity, ecotoxicological monitoring, and detection of COVID-19: a critical review
Environmental Science and Pollution Research
2024
Environmental DNA methods for biosecurity and invasion biology in terrestrial ecosystems: Progress, pitfalls, and prospects
Science of The Total Environment
2024
Evaluating the effectiveness of the eRNA technique in monitoring fish biodiversity – A case study in the Qingdao offshore, China
Global Ecology and Conservation
2024
Shifts in sulphur-cycling bacteria in the rhizobiome support the adaptation of Caulerpa prolifera to elevated sulphide levels
Frontiers in Marine Science
2023
Can eDNA be an indicator of tree groundwater use? A perspective
Marine and Freshwater Research
2023
Through the eDNA looking glass: Responses of fjord benthic foraminiferal communities to contrasting environmental conditions
Journal of Eukaryotic Microbiology
2023
Warm temperature and alkaline conditions accelerate environmental RNA degradation
Environmental DNA
2023
The sound of restored soil: using ecoacoustics to measure soil biodiversity in a temperate forest restoration context
Restoration Ecology
2023
Environmental DNA (eDNA) detects temporal and habitat effects on community composition and endangered species in ephemeral ecosystems: A case study in vernal pools
Environmental DNA
2023
A new simulation framework to evaluate the suitability of eDNA for marine and aquatic Environmental Impact Assessments
Environmental DNA
2023
Applications of environmental DNA (eDNA) to detect subterranean and aquatic invasive species: A critical review on the challenges and limitations of eDNA metabarcoding
Environmental Advances
2023
Using environmental DNA to better inform decision making around decommissioning alternatives for offshore oil and gas infrastructure
Science of The Total Environment
2023
Elevated atmospheric CO2 concentrations caused a shift of the metabolically active microbiome in vineyard soil
BMC Microbiology
2023
Detection and Management of Freshwater Invasive Alien Species through Environmental DNA Analysis and Geographic Information Systems: A Review
Sustainability
2023
Metabarcoding by Combining Environmental DNA with Environmental RNA to Monitor Fish Species in the Han River, Korea
Fishes
2022
Sediment-associated microbial community profiling: sample pre-processing through sequential membrane filtration for 16S rRNA amplicon sequencing
BMC Microbiology
2022
Assessing the presence, settlement and growth of the invasive Mediterranean fanworm, Sabella spallanzanii, on mussel farms
Journal of Experimental Marine Biology and Ecology
2022
RNA allows identifying the consumption of carrion prey
Molecular Ecology Resources
2022
Elevated Atmospheric CO2 Modifies Mostly the Metabolic Active Rhizosphere Soil Microbiome in the Giessen FACE Experiment
Microbial Ecology
2022
Comparative environmental RNA and DNA metabarcoding analysis of river algae and arthropods for ecological surveys and water quality assessment
Scientific Reports
2022
Assessing the performance and efficiency of environmental DNA/RNA capture methodologies under controlled experimental conditions
Methods in Ecology and Evolution
2022
Aquatic eDNA can advance monitoring of a small‐bodied terrestrial salamander and amphibian pathogen
Environmental DNA
2022
Complementary molecular and visual sampling of fish on oil and gas platforms provides superior biodiversity characterisation
Marine Environmental Research
2022
RNA metabarcoding helps reveal zooplankton community response to environmental stressors
Environmental Pollution
2022
In-situ sequencing reveals the effect of storage on lacustrine sediment microbiome demographics and functionality
Environmental Microbiome
2022
Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Science of The Total Environment
2022
Exploring the potential of mRNA for taxonomic delineation of marine benthic eukaryotes
Marine Genomics
2022
Environmental RNA as a Tool for Marine Community Biodiversity Assessments
Scientific Reports
2022
Environmental nucleic acids: A field‐based comparison for monitoring freshwater habitats using eDNA and eRNA
Molecular Ecology Resources
2022
Environmental RNA outperforms eDNA metabarcoding in assessing impact of marine pollution: A chromium-spiked mesocosm test
Chemosphere
2022
Environmental DNA in human and veterinary parasitology - Current applications and future prospects for monitoring and control
Food and Waterborne Parasitology
2021
Using zooplankton metabarcoding to assess the efficacy of different techniques to clean-up an oil-spill in a boreal lake
Aquatic Toxicology
2021
Fish environmental RNA enables precise ecological surveys with high positive predictivity
Ecological Indicators
2021
Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates
Water
2021
Composition and distribution of fish environmental DNA in an Adirondack watershed
PeerJ
2021
16S and 18S rRNA Gene Metabarcoding Provide Congruent Information on the Responses of Sediment Communities to Eutrophication
Frontiers in Marine Science
2021
Temporal and spatial variation in bacterial communities on uniform substrates in non‐wadeable rivers
Environmental DNA
2021
Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets
BMC Bioinformatics
2021
Comparing sediment preservation methods for genomic biomonitoring of coastal marine ecosystems
Marine Pollution Bulletin
2020
Advances in metabarcoding techniques bring us closer to reliable monitoring of the marine benthos
Journal of Applied Ecology
2020
Environmental DNA from plastic and textile marine litter detects exotic and nuisance species nearby ports
PLOS ONE
2020
Meiofaunal diversity at a seamount in the pacific ocean: A comprehensive study using environmental DNA and RNA
Deep Sea Research Part I: Oceanographic Research Papers
2020
Encyclopedia of the World's Biomes
2020
Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects
Biodiversity and Conservation
2020
Benthic foraminiferal metabarcoding and morphology-based assessment around three offshore gas platforms: Congruence and complementarity
Environment International
2020
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities
Frontiers in Marine Science
2020
Exploring Environmental DNA (eDNA) to Assess Biodiversity of Hard Substratum Faunal Communities on the Lucky Strike Vent Field (Mid-Atlantic Ridge) and Investigate Recolonization Dynamics After an Induced Disturbance
Frontiers in Marine Science
2020
Metabarcoding on both environmental DNA and RNA highlights differences between fungal communities sampled in different habitats
PLOS ONE
2019
A Comparison of Different Ciliate Metabarcode Genes as Bioindicators for Environmental Impact Assessments of Salmon Aquaculture
Journal of Eukaryotic Microbiology
2019
A review on the applications and recent advances in environmental DNA (eDNA) metagenomics
Reviews in Environmental Science and Bio/Technology
2019
In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle
Frontiers in Marine Science
2019
Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?
Genes
2019
Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy)
Marine Environmental Research
2019
Using Bayesian networks to predict risk to estuary water quality and patterns of benthic environmental DNA in Queensland
Integrated Environmental Assessment and Management
2019
Evaluating putative ecological drivers of microcystin spatiotemporal dynamics using metabarcoding and environmental data
Harmful Algae
2019
Linking Environmental DNA and RNA for Improved Detection of the Marine Invasive Fanworm Sabella spallanzanii
Frontiers in Marine Science
2018
Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches
Scientific Reports
2018
Comparison of environmental DNA and bulk‐sample metabarcoding using highly degenerate cytochrome c oxidase I primers
Molecular Ecology Resources
2018
Advantages and Limitations of Environmental DNA/RNA Tools for Marine Biosecurity: Management and Surveillance of Non-indigenous Species
Frontiers in Marine Science
2018
An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA
PeerJ
2018
A cross-taxa study using environmental DNA/RNA metabarcoding to measure biological impacts of offshore oil and gas drilling and production operations
Marine Pollution Bulletin
2018
Anticancer Plants: Natural Products and Biotechnological Implements
2018
Assessing the effect of mercury pollution on cultured benthic foraminifera community using morphological and eDNA metabarcoding approaches
Marine Pollution Bulletin
2018
A Hard Day's Night: Diel Shifts in Microbial Eukaryotic Activity in the North Pacific Subtropical Gyre
Frontiers in Marine Science
2018
Disentangling protist communities identified from DNA and RNA surveys in the Pearl River–South China Sea Continuum during the wet and dry seasons
Molecular Ecology
2018
Incorporating molecular-based functional and co-occurrence network properties into benthic marine impact assessments
FEMS Microbiology Ecology
2018
Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity
Scientific Reports
2018
DNA metabarcoding—a new approach to fauna monitoring in mine site restoration
Restoration Ecology
2018
The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems
Science of The Total Environment
2017
Environmental management frameworks for offshore mining: the New Zealand approach
Marine Policy
2017
Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications
PLOS ONE
2017
Bilge water as a vector for the spread of marine pests: a morphological, metabarcoding and experimental assessment
Biological Invasions
2017
Fungi associated with mesophotic macroalgae from the ‘Au‘au Channel, west Maui are differentiated by host and overlap terrestrial communities
PeerJ
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