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2025	Gut microbiota and metabolic functions in herbivorous fish from Xisha coral reefs, China Marine Environmental Research Xiyue Yang, Yayuan Xiao, Xiaojun Shi, Tuanjie Li, Xiaofei Xiong, Teng Wang, Lin Lin, Yu Liu, Jian Zou, Chunhou Li, Yong Liu, Peng Wu
2025	Diet-Induced Shifts in the Hindgut Microbiome Leads to Subtle Changes in Gut and Liver Function of a Marine Herbivorous Fish Ecological and Evolutionary Physiology Michelle J. Herrera, Joseph Heras, Caitlyn Catabay, Michelle Booth, Kwasi M. Connor, Donovan P. German
2025	Comparative gut microbiome research through the lens of ecology: theoretical considerations and best practices Biological Reviews Samuel Degregori, Xiaolin Wang, Akhil Kommala, Noah Schulhof, Sadaf Moradi, Allison MacDonald, Kaitlin Eblen, Sophia Jukovich, Emma Smith, Emily Kelleher, Kota Suzuki, Zoey Hall, Rob Knight, Katherine Ryan Amato
2025	Morphology and molecular phylogeny of Rhadinorhynchus nudus (Harada, 1938) (Acanthocephala: Rhadinorhynchidae) from Euthynnus affinis (Scombridae) in the Persian Gulf off Iran Systematic Parasitology Reza Ghanei-Motlagh, Jesús S. Hernández-Orts, Mark D. Fast, Mansour El-Matbouli, Mona Saleh
2024	Impacts of Black Soldier Fly (Hermetia illucens) Larval Meal on Intestinal Histopathology and Microbiome Responses in Hybrid Grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatus ♂): A Comprehensive Analysis Animals Yan Chen, Jun Ma, Yoong-Soon Yong, Yonggan Chen, Bing Chen, Junming Cao, Kai Peng, Guaxia Wang, Hai Huang, Jiun-Yan Loh
2024	Unveiling the gut bacteriome diversity and distribution in the national fish hilsa (Tenualosa ilisha) of Bangladesh PLOS ONE A. Q. M. Robiul Kawser, M. Nazmul Hoque, M. Shaminur Rahman, Tahsin Islam Sakif, Tracey J. Coffey, Tofazzal Islam
2024	Interwoven processes in fish development: microbial community succession and immune maturation PeerJ Lisa Zoé Auclert, Mousumi Sarker Chhanda, Nicolas Derome
2024	Applications of Metagenomics Alla Devivaraprasad Reddy, Dharnappa Sannejal Akhila, Premnath Ramya, Vittal Rajeshwari, Guladahalli Manjunatha Kavitha, Sanjay Kumar Gupta
2024	Do fish gut microbiotas vary across spatial scales? A case study of Diplodus vulgaris in the Mediterranean Sea Animal Microbiome Ginevra Lilli, Charlotte Sirot, Hayley Campbell, Fanny Hermand, Deirdre Brophy, Jean-François Flot, Conor T. Graham, Isabelle F. George
2024	Advances in Neurotoxicology
2024	Comparative analyses of gut microbiota reveal ammonia detoxification and nitrogen assimilation in Cyprinus carpio var. specularis Folia Microbiologica Chandni Talwar, Shekhar Nagar, Ram Krishan Negi
2023	Gut microbial diversity and function analysis of the final-instar larvae of Protohermes xanthodes (Megaloptera: Corydalidae) Journal of Insect Science Zaiyun Shen, Chengquan Cao, Xiaofeng Xia
2023	Insights into the circulating microbiome of Atlantic and Greenland halibut populations: the role of species-specific and environmental factors Scientific Reports Fanny Fronton, Sophia Ferchiou, France Caza, Richard Villemur, Dominique Robert, Yves St-Pierre
2023	Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides Applied and Environmental Microbiology Sheila Podell, Aaron Oliver, Linda Wegley Kelly, Wesley J. Sparagon, Alvaro M. Plominsky, Robert S. Nelson, Lieve M. L. Laurens, Simona Augyte, Neil A. Sims, Craig E. Nelson, Eric E. Allen
2023	Host individual and gut location are more important in gut microbiota community composition than temporal variation in the marine herbivorous fish Kyphosus sydneyanus BMC Microbiology Alessandro Pisaniello, Kim M. Handley, W. Lindsey White, Esther R. Angert, Jian Sheng Boey, Kendall D. Clements
2022	Bacterial biofilms on medical masks disposed in the marine environment: a hotspot of biological and functional diversity Science of The Total Environment F. Crisafi, F. Smedile, M.M. Yakimov, F. Aulenta, S. Fazi, V. La Cono, A. Martinelli, V. Di Lisio, R. Denaro
2022	Closed Season Policy Is Only Partly Practiced in Surigao del Sur, Philippines World Edison D. Macusi, Lizel L. Sabino, Erna S. Macusi
2022	Is the Intestinal Bacterial Community in the Australian Rabbitfish Siganus fuscescens Influenced by Seaweed Supplementation or Geography? Microorganisms Valentin Thépot, Joel Slinger, Michael A. Rimmer, Nicholas A. Paul, Alexandra H. Campbell
2022	Intestinal Microbiome Richness of Coral Reef Damselfishes (Actinopterygii: Pomacentridae) Integrative Organismal Biology Christopher R J Kavazos, Francesco Ricci, William Leggat, Jordan M Casey, J Howard Choat, Tracy D Ainsworth
2022	Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish PeerJ Lasse Nyholm, Iñaki Odriozola, Garazi Martin Bideguren, Ostaizka Aizpurua, Antton Alberdi
2022	Distinct microbiota composition and fermentation products indicate functional compartmentalization in the hindgut of a marine herbivorous fish Molecular Ecology Bikiran Pardesi, Anthony M. Roberton, Kevin C. Lee, Esther R. Angert, Douglas I. Rosendale, Svetlana Boycheva, William L. White, Kendall D. Clements
2022	Shift and homogenization of gut microbiome during invasion in marine fishes Animal Microbiome Arthur Escalas, Jean-Christophe Auguet, Amandine Avouac, Jonathan Belmaker, Thanos Dailianis, Moshe Kiflawi, Renanel Pickholtz, Grigorios Skouradakis, Sébastien Villéger
2022	Outlook of Climate Change and Fish Nutrition Kavita Kumari, Sangeetha M. Nair
2022	Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes Animal Microbiome Wesley J. Sparagon, Emily C. Gentry, Jeremiah J. Minich, Lisa Vollbrecht, Lieve M. L. Laurens, Eric E. Allen, Neil A. Sims, Pieter C. Dorrestein, Linda Wegley Kelly, Craig E. Nelson
2022	Sources of variation in community composition of the hindgut microbiota in two tropical Kyphosus species Coral Reefs Alessandro Pisaniello, Lilly D. Bojarski, Kim M. Handley, W. Lindsey White, Esther R. Angert, Kendall D. Clements
2022	Adapting to Novel Environments Together: Evolutionary and Ecological Correlates of the Bacterial Microbiome of the World’s Largest Cavefish Diversification (Cyprinidae, Sinocyclocheilus) Frontiers in Microbiology Shipeng Zhou, Amrapali P. Rajput, Tingru Mao, Yewei Liu, Gajaba Ellepola, Jayampathi Herath, Jian Yang, Madhava Meegaskumbura
2022	Multi-dimensional investigation and distribution characteristics analysis of gut microbiota of different marine fish in Fujian Province of China Frontiers in Microbiology Hang Sun, Fangyi Chen, Hua Hao, Ke-Jian Wang
2021	The role of intestinal microbiota of the marine fish (Acanthopagrus latus) in mercury biotransformation Environmental Pollution Tao-Tao Yang, Yong Liu, Sha Tan, Wen-Xiong Wang, Xun Wang
2021	Enteromorpha prolifera Diet Drives Intestinal Microbiome Composition in Siganus oramin Current Microbiology Yan Xu, Jin Li, Xuefeng Han, Zhibiao Zhang, Mingqi Zhong, Zhong Hu
2021	Longitudinal variations in the gastrointestinal microbiome of the white shrimp,Litopenaeus vannamei PeerJ Estefanía Garibay-Valdez, Francesco Cicala, Marcel Martinez-Porchas, Ricardo Gómez-Reyes, Francisco Vargas-Albores, Teresa Gollas-Galván, Luis Rafael Martínez-Córdova, Kadiya Calderón
2021	Biotechnological Advances in Aquaculture Health Management Md Javed Foysal, Sanjay Kumar Gupta, Devivaraprasad Reddy Alla
2020	Gut Microbiota of Migrating Wild Rabbit Fish (Siganus guttatus) Larvae Have Low Spatial and Temporal Variability Microbial Ecology Duy Le, Phuoc Nguyen, Dung Nguyen, Kristof Dierckens, Nico Boon, Tim Lacoere, Frederiek-Maarten Kerckhof, Jo De Vrieze, Olav Vadstein, Peter Bossier
2020	Diversity of gut microbiomes in marine fishes is shaped by host‐related factors Molecular Ecology Qi Huang, Ronia C. Sham, Yu Deng, Yanping Mao, Chunxiao Wang, Tong Zhang, Kenneth M. Y. Leung
2020	Field-Deployed Extruded Seed Pellets Show Promise for Perennial Grass Establishment in Arid Zone Mine Rehabilitation Frontiers in Ecology and Evolution Emma Stock, Rachel J. Standish, Miriam Muñoz-Rojas, Richard W. Bell, Todd E. Erickson
2020	Deep Insights into Gut Microbiota in Four Carnivorous Coral Reef Fishes from the South China Sea Microorganisms Yu-Miao Gao, Ke-Shu Zou, Lei Zhou, Xian-De Huang, Yi-Yang Li, Xiang-Yang Gao, Xiao Chen, Xiao-Yong Zhang
2020	The effects of environment and ontogeny on the skin microbiome of two Stegastes damselfishes (Pomacentridae) from the eastern Caribbean Sea Marine Biology Raquel Xavier, Ana Pereira, Andres Pagan, Gina C. Hendrick, Matthew D. Nicholson, Daniela Rosado, Marta C. Soares, Marcos Pérez-Losada, Paul C. Sikkel
2020	Microbial symbiosis and coevolution of an entire clade of ancient vertebrates: the gut microbiota of sea turtles and its relationship to their phylogenetic history Animal Microbiome Titus Franciscus Scheelings, Robert J. Moore, Thi Thu Hao Van, Marcel Klaassen, Richard D. Reina
2020	Fish Skin and Gut Microbiomes Show Contrasting Signatures of Host Species and Habitat Applied and Environmental Microbiology François-Étienne Sylvain, Aleicia Holland, Sidki Bouslama, Émie Audet-Gilbert, Camille Lavoie, Adalberto Luis Val, Nicolas Derome
2019	A Risky Business? Habitat and Social Behavior Impact Skin and Gut Microbiomes in Caribbean Cleaning Gobies Frontiers in Microbiology Raquel Xavier, Renata Mazzei, Marcos Pérez-Losada, Daniela Rosado, Joana L. Santos, Ana Veríssimo, Marta C. Soares
2019	Modulation of Intestinal Microbiota in Solea senegalensis Fed Low Dietary Level of Ulva ohnoi Frontiers in Microbiology Silvana T. Tapia-Paniagua, Milena Fumanal, Victoria Anguís, Catalina Fernández-Díaz, F. Javier Alarcón, Miguel A. Moriñigo, M. Carmen Balebona
2019	Diet and diet‐associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi) Microbial Biotechnology Jackson Wilkes Walburn, Bernd Wemheuer, Torsten Thomas, Elizabeth Copeland, Wayne O'Connor, Mark Booth, Stewart Fielder, Suhelen Egan
2019	Characterization of the gastrointestinal bacterial microbiome of farmed juvenile and adult white Cachama (Piaractus brachypomus) Aquaculture Victor Alfonso Castañeda-Monsalve, Howard Junca, Erika García-Bonilla, Olga Inés Montoya-Campuzano, Claudia Ximena Moreno-Herrera
2019	Systematic evaluation of the gut microbiome of swamp eel (Monopterus albus) by 16S rRNA gene sequencing PeerJ Xuan Chen, Shaoming Fang, Lili Wei, Qiwang Zhong
2019	Characterization of the skin and gill microbiomes of the farmed seabass (Dicentrarchus labrax) and seabream (Sparus aurata) Aquaculture Daniela Rosado, Marcos Pérez-Losada, Ricardo Severino, Jo Cable, Raquel Xavier
2019	Rainbow trout (Oncorhynchus mykiss) gut microbiota is modulated by insect meal from Hermetia illucens prepupae in the diet Reviews in Fish Biology and Fisheries Genciana Terova, Simona Rimoldi, Chiara Ascione, Elisabetta Gini, Chiara Ceccotti, Laura Gasco
2019	Defining the Distinct Skin and Gut Microbiomes of the Northern Pike (Esox lucius) Frontiers in Microbiology Elizabeth M. Reinhart, Benjamin J. Korry, Aislinn D. Rowan-Nash, Peter Belenky
2019	Surgeonfish feces increase microbial opportunism in reef-building corals Marine Ecology Progress Series L Ezzat, T Lamy, RL Maher, KS Munsterman, KM Landfield, E Schmeltzer, CA Gaulke, DE Burkepile, R Vega Thurber
2019	Effects of disease, antibiotic treatment and recovery trajectory on the microbiome of farmed seabass (Dicentrarchus labrax) Scientific Reports Daniela Rosado, Raquel Xavier, Ricardo Severino, Fernando Tavares, Jo Cable, Marcos Pérez-Losada
2019	Coral Reefs of the World Matthew J. Neave, Amy Apprill, Greta Aeby, Sou Miyake, Christian R. Voolstra
2018	Fish Gut Microbiome: Current Approaches and Future Perspectives Indian Journal of Microbiology Chandni Talwar, Shekhar Nagar, Rup Lal, Ram Krishan Negi
2018	The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish Frontiers in Microbiology Jacquelyn Jones, Joseph D. DiBattista, Michael Stat, Michael Bunce, Mary C. Boyce, David V. Fairclough, Michael J. Travers, Megan J. Huggett
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