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2025	Lecture Notes in Computer Science Yizheng Wang, Yijie Ding, Quan Zou
2025	MlyPredCSED: based on extreme point deviation compensated clustering combined with cross-scale convolutional neural networks to predict multiple lysine sites in human Briefings in Bioinformatics Yun Zuo, Xingze Fang, Jiankang Chen, Jiayi Ji, Yuwen Li, Zeyu Wu, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng, Hongwei Yin, Anjing Zhao
2024	PreMLS: The undersampling technique based on ClusterCentroids to predict multiple lysine sites PLOS Computational Biology Yun Zuo, Xingze Fang, Jiayong Wan, Wenying He, Xiangrong Liu, Xiangxiang Zeng, Zhaohong Deng
2022	iPhosS(Deep)-PseAAC: Identification of Phosphoserine Sites in Proteins Using Deep Learning on General Pseudo Amino Acid Compositions IEEE/ACM Transactions on Computational Biology and Bioinformatics Sheraz Naseer, Waqar Hussain, Yaser Daanial Khan, Nouman Rasool
2022	Comprehensive computational analysis reveals YXXΦ[I/L/M/F/V] motif and YXXΦ-like tetrapeptides across HFRS causing Hantaviruses and their association with viral pathogenesis and host immune regulation Frontiers in Immunology Fatima Noor, Usman Ali Ashfaq, Muhammad Asif, Muhammad Muzammal Adeel, Abdulrahman Alshammari, Metab Alharbi
2020	RAM-PGK: Prediction of Lysine Phosphoglycerylation Based on Residue Adjacency Matrix Genes Abel Avitesh Chandra, Alok Sharma, Abdollah Dehzangi, Tatushiko Tsunoda
2019	Bigram-PGK: phosphoglycerylation prediction using the technique of bigram probabilities of position specific scoring matrix BMC Molecular and Cell Biology Abel Chandra, Alok Sharma, Abdollah Dehzangi, Daichi Shigemizu, Tatsuhiko Tsunoda
2018	PhoglyStruct: Prediction of phosphoglycerylated lysine residues using structural properties of amino acids Scientific Reports Abel Chandra, Alok Sharma, Abdollah Dehzangi, Shoba Ranganathan, Anjeela Jokhan, Kuo-Chen Chou, Tatsuhiko Tsunoda
2018	O-GlcNAcPRED-II: an integrated classification algorithm for identifying O-GlcNAcylation sites based on fuzzy undersampling and a K-means PCA oversampling technique Bioinformatics Cangzhi Jia, Yun Zuo, Quan Zou
2018	High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines International Journal of Molecular Sciences Shixiong Wang, Sachin Kumar Singh, Madhumohan R. Katika, Sandra Lopez-Aviles, Antoni Hurtado
2018	Prediction of zinc binding sites in proteins using sequence derived information Journal of Biomolecular Structure and Dynamics Abhishikha Srivastava, Manish Kumar
2017	ksrMKL: a novel method for identification of kinase–substrate relationships using multiple kernel learning PeerJ Minghui Wang, Tao Wang, Ao Li
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