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2024	Uncovering domain motif interactions using high‐throughput protein–protein interaction detection methods FEBS Letters Sobia Idrees, Keshav Raj Paudel, Tayyaba Sadaf, Philip M. Hansbro
2018	PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants Nucleic Acids Research Izabella Krystkowiak, Jean Manguy, Norman E Davey
2017	A bioinformatics pipeline to search functional motifs within whole-proteome data: a case study of poxviruses Virus Genes Haitham Sobhy
2017	SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions Nucleic Acids Research Izabella Krystkowiak, Norman E. Davey
2017	Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway PLOS Computational Biology Gábor Erdős, Tamás Szaniszló, Mátyás Pajkos, Borbála Hajdu-Soltész, Bence Kiss, Gábor Pál, László Nyitray, Zsuzsanna Dosztányi
2015	High-throughput methods for identification of protein-protein interactions involving short linear motifs Cell Communication and Signaling Cecilia Blikstad, Ylva Ivarsson