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2023	Classification of microRNA precursors using reduced features of dinucleotide repeats in cattle (Bos Taurus) Research on Animal Production Atefeh Seyeddokht, Javad Rahmaninia, Hasan Karami
2023	Hepatitis B Virus and microRNAs: A Bioinformatics Approach International Journal of Molecular Sciences Verdiana Zulian, Giulia Fiscon, Paola Paci, Anna Rosa Garbuglia
2023	NeRNA: A negative data generation framework for machine learning applications of noncoding RNAs Computers in Biology and Medicine Mehmet Emin Orhan, Yılmaz Mehmet Demirci, Müşerref Duygu Saçar Demirci
2022	Methods in Molecular Biology Müşerref Duygu Saçar Demirci
2021	Classification of Precursor MicroRNAs from Different Species Based on K-mer Distance Features Algorithms Malik Yousef, Jens Allmer
2021	Circular RNA–MicroRNA–MRNA interaction predictions in SARS-CoV-2 infection Journal of Integrative Bioinformatics Yılmaz Mehmet Demirci, Müşerref Duygu Saçar Demirci
2020	Computational analysis of microRNA-mediated interactions in SARS-CoV-2 infection PeerJ Müşerref Duygu Saçar Demirci, Aysun Adan
2019	Improved Pre-miRNAs Identification Through Mutual Information of Pre-miRNA Sequences and Structures Frontiers in Genetics Xiangzheng Fu, Wen Zhu, Lijun Cai, Bo Liao, Lihong Peng, Yifan Chen, Jialiang Yang
2019	A survey of software tools for microRNA discovery and characterization using RNA-seq Briefings in Bioinformatics Michele Bortolomeazzi, Enrico Gaffo, Stefania Bortoluzzi
2019	Methods in Molecular Biology Müşerref Duygu Saçar Demirci, Malik Yousef, Jens Allmer
2018	COMPUTATIONAL IDENTIFICATION OF MICRORNAS FROM SSDNA VIRUSES Anadolu University Journal of Science and Technology-A Applied Sciences and Engineering Müşerref Duygu Saçar Demirci
2017	Categorization of species based on their microRNAs employing sequence motifs, information-theoretic sequence feature extraction, and k-mers EURASIP Journal on Advances in Signal Processing Malik Yousef, Dawit Nigatu, Dalit Levy, Jens Allmer, Werner Henkel
2017	Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection Journal of Integrative Bioinformatics Müşerref Duygu Saçar Demirci, Jens Allmer