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Yueyan Zhang, Jun Sasaki, Ang Li, Jundong Chen

Ziqi Zhang, Guanqing Yu, Zhaohong Deng, Chenxi Luo, Cheng Cai, Wei Zhang, Fuping Hu, Kup-Sze Choi, Zhisheng Wei, Lei Wang, Jing Wu

Xiao Chen, Zhiyun Shen, Tingyu Guan, Yuchen Tao, Yichen Kang, Yuxia Zhang

Sushmita Basu, Daisuke Kihara, Lukasz Kurgan

Münevver BARAN, Mustafa ÖZTÜRK, Fatma LATİFOĞLU

H. Erdinç KOCER, Kerim Kürşat ÇEVİK

Kunal Dutta, Sergey Shityakov, Ibrahim Khalifa

Hayat Ali Shah, Juan Liu, Zhihui Yang, Jing Feng

Kinaan Aamir Khan, Safyan Aman Memon, Hammad Naveed

Louis Papageorgiou, Livia Shalzi, Katerina Pierouli, Eleni Papakonstantinou, Symeon Manias, Konstantina Dragoumani, Nicolas Nicolaides, Antonis Giannakakis, Flora Bacopoulou, George Chrousos, Elias Eliopoulos, Dimitrios Vlachakis

Stefanos Leptidis, Eleni Papakonstantinou, Kalliopi Diakou, Katerina Pierouli, Thanasis Mitsis, Konstantina Dragoumani, Flora Bacopoulou, Despina Sanoudou, George Chrousos, Dimitrios Vlachakis

Ryan Feehan, Meghan W. Franklin, Joanna S. G. Slusky

Louis Papageorgiou, Eleni Papakonstantinou, Constantinos Salis, Eleytheria Polychronidou, Marianna Hagidimitriou, Dimitris Maroulis, Elias Eliopoulos, Dimitrios Vlachakis

Rosalin Bonetta, Gianluca Valentino

Constantinos Salis, Louis Papageorgiou, Eleni Papakonstantinou, Marianna Hagidimitriou, Dimitrios Vlachakis

Zhiyu Tao, Benzhi Dong, Zhixia Teng, Yuming Zhao

Sofia Raftopoulou, Nicolas C. Nicolaides, Louis Papageorgiou, Anastasia Amfilochiou, Spyros G. Zakinthinos, Potamitis George, Elias Eliopoulos, George P. Chrousos, Dimitrios Vlachakis

Jianzhao Gao, Hong Wei, Alberto Cano, Lukasz Kurgan

Xuan Xiao, Li-Wen Duan, Guang-Fu Xue, Gang Chen, Pu Wang, Wang-Ren Qiu

Louis Papageorgiou, Dimitris Maroulis, George P. Chrousos, Elias Eliopoulos, Dimitrios Vlachakis

Yanjuan Jia, Lei Chen, Jian-Peng Zhou, Min Liu

Zhenzhen Zou, Shuye Tian, Xin Gao, Yu Li

Ruibo Gao, Mengmeng Wang, Jiaoyan Zhou, Yuhang Fu, Meng Liang, Dongliang Guo, Junlan Nie

Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Vasileios Megalooikonomou, Nikos Paragios, Evangelia I. Zacharaki

Evangelia I. Zacharaki

2025	Application and challenges of machine learning in microbial remediation: A review of current status and future directions Critical Reviews in Environmental Science and Technology Yueyan Zhang, Jun Sasaki, Ang Li, Jundong Chen
2025	SEFP: Structure-Based Enzyme Function Prediction IEEE Transactions on Computational Biology and Bioinformatics Ziqi Zhang, Guanqing Yu, Zhaohong Deng, Chenxi Luo, Cheng Cai, Wei Zhang, Fuping Hu, Kup-Sze Choi, Zhisheng Wei, Lei Wang, Jing Wu
2024	Analyzing Patient Experience on Weibo: Machine Learning Approach to Topic Modeling and Sentiment Analysis JMIR Medical Informatics Xiao Chen, Zhiyun Shen, Tingyu Guan, Yuchen Tao, Yichen Kang, Yuxia Zhang
2023	Computational prediction of disordered binding regions Computational and Structural Biotechnology Journal Sushmita Basu, Daisuke Kihara, Lukasz Kurgan
2022	Derin Öğrenme Teknikleri Kullanarak İkili ve Çok Etiketli Sınıflandırma İle Enzimatik Fonksiyon Tahmini European Journal of Science and Technology Münevver BARAN, Mustafa ÖZTÜRK, Fatma LATİFOĞLU
2021	Deep neural networks based wrist print region segmentation and classification MANAS Journal of Engineering H. Erdinç KOCER, Kerim Kürşat ÇEVİK
2021	New Trends in Bioremediation Technologies Toward Environment-Friendly Society: A Mini-Review Frontiers in Bioengineering and Biotechnology Kunal Dutta, Sergey Shityakov, Ibrahim Khalifa
2021	Review of Machine Learning Methods for the Prediction and Reconstruction of Metabolic Pathways Frontiers in Molecular Biosciences Hayat Ali Shah, Juan Liu, Zhihui Yang, Jing Feng
2021	A hierarchical deep learning based approach for multi‐functional enzyme classification Protein Science Kinaan Aamir Khan, Safyan Aman Memon, Hammad Naveed
2021	An updated evolutionary study of the nuclear receptor protein family World Academy of Sciences Journal Louis Papageorgiou, Livia Shalzi, Katerina Pierouli, Eleni Papakonstantinou, Symeon Manias, Konstantina Dragoumani, Nicolas Nicolaides, Antonis Giannakakis, Flora Bacopoulou, George Chrousos, Elias Eliopoulos, Dimitrios Vlachakis
2021	Epitranscriptomics of cardiovascular diseases (Review) International Journal of Molecular Medicine Stefanos Leptidis, Eleni Papakonstantinou, Kalliopi Diakou, Katerina Pierouli, Thanasis Mitsis, Konstantina Dragoumani, Flora Bacopoulou, Despina Sanoudou, George Chrousos, Dimitrios Vlachakis
2021	Machine learning differentiates enzymatic and non-enzymatic metals in proteins Nature Communications Ryan Feehan, Meghan W. Franklin, Joanna S. G. Slusky
2020	Advances in Experimental Medicine and Biology Louis Papageorgiou, Eleni Papakonstantinou, Constantinos Salis, Eleytheria Polychronidou, Marianna Hagidimitriou, Dimitris Maroulis, Elias Eliopoulos, Dimitrios Vlachakis
2020	Machine learning techniques for protein function prediction Proteins: Structure, Function, and Bioinformatics Rosalin Bonetta, Gianluca Valentino
2020	Advances in Experimental Medicine and Biology Constantinos Salis, Louis Papageorgiou, Eleni Papakonstantinou, Marianna Hagidimitriou, Dimitrios Vlachakis
2020	The Classification of Enzymes by Deep Learning IEEE Access Zhiyu Tao, Benzhi Dong, Zhixia Teng, Yuming Zhao
2020	Advances in Experimental Medicine and Biology Sofia Raftopoulou, Nicolas C. Nicolaides, Louis Papageorgiou, Anastasia Amfilochiou, Spyros G. Zakinthinos, Potamitis George, Elias Eliopoulos, George P. Chrousos, Dimitrios Vlachakis
2020	PSIONplusm Server for Accurate Multi-Label Prediction of Ion Channels and Their Types Biomolecules Jianzhao Gao, Hong Wei, Alberto Cano, Lukasz Kurgan
2020	MF-EFP: Predicting Multi-Functional Enzymes Function Using Improved Hybrid Multi-Label Classifier IEEE Access Xuan Xiao, Li-Wen Duan, Guang-Fu Xue, Gang Chen, Pu Wang, Wang-Ren Qiu
2020	Advances in Experimental Medicine and Biology Louis Papageorgiou, Dimitris Maroulis, George P. Chrousos, Elias Eliopoulos, Dimitrios Vlachakis
2020	iMPT-FRAKEL: A Simple Multi-label Web-server that Only Uses Fingerprints to Identify which Metabolic Pathway Types Compounds can Participate In The Open Bioinformatics Journal Yanjuan Jia, Lei Chen, Jian-Peng Zhou, Min Liu
2019	mlDEEPre: Multi-Functional Enzyme Function Prediction With Hierarchical Multi-Label Deep Learning Frontiers in Genetics Zhenzhen Zou, Shuye Tian, Xin Gao, Yu Li
2019	Prediction of Enzyme Function Based on Three Parallel Deep CNN and Amino Acid Mutation International Journal of Molecular Sciences Ruibo Gao, Mengmeng Wang, Jiaoyan Zhou, Yuhang Fu, Meng Liang, Dongliang Guo, Junlan Nie
2018	EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation PeerJ Afshine Amidi, Shervine Amidi, Dimitrios Vlachakis, Vasileios Megalooikonomou, Nikos Paragios, Evangelia I. Zacharaki
2017	Prediction of protein function using a deep convolutional neural network ensemble PeerJ Computer Science Evangelia I. Zacharaki
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