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Alessandro Botton, Francesco Girardi, Benedetto Ruperti, Matteo Brilli, Veronica Tijero, Giulia Eccher, Francesca Populin, Elisabetta Schievano, Tobia Riello, Sergi Munné-Bosch, Monica Canton, Angela Rasori, Valerio Cardillo, Franco Meggio

Polina V. Pavlovich, Pierre Cauchy

Lluc Cabús, Julien Lagarde, Joao Curado, Esther Lizano, Jennifer Pérez-Boza

Holly C Beale, Jacquelyn M Roger, Matthew A Cattle, Liam T McKay, Drew K A Thompson, Katrina Learned, A Geoffrey Lyle, Ellen T Kephart, Rob Currie, Du Linh Lam, Lauren Sanders, Jacob Pfeil, John Vivian, Isabel Bjork, Sofie R Salama, David Haussler, Olena M Vaske

Asia Mendelevich, Svetlana Vinogradova, Saumya Gupta, Andrey A. Mironov, Shamil R. Sunyaev, Alexander A. Gimelbrant

Zhi-Xiong Chong, Wan-Yong Ho, Swee-Keong Yeap, Mong-Lien Wang, Yueh Chien, Nalini Devi Verusingam, Han-Kiat Ong

Diana Duarte-Delgado, Said Dadshani, Heiko Schoof, Benedict C. Oyiga, Michael Schneider, Boby Mathew, Jens Léon, Agim Ballvora

Leilei Wu, Qinfang Deng, Ze Xu, Songwen Zhou, Chao Li, Yi-Xue Li

Nicholas Owen, Mariya Moosajee

Benedetto Ruperti, Alessandro Botton, Francesca Populin, Giulia Eccher, Matteo Brilli, Silvia Quaggiotti, Sara Trevisan, Nadia Cainelli, Paola Guarracino, Elisabetta Schievano, Franco Meggio

Shulan Tian, Shuxia Peng, Michael Kalmbach, Krutika S. Gaonkar, Aditya Bhagwate, Wei Ding, Jeanette Eckel-Passow, Huihuang Yan, Susan L. Slager

2023	Advances in Applied Microbiology
2022	Grape Berry Responses to Sequential Flooding and Heatwave Events: A Physiological, Transcriptional, and Metabolic Overview Plants Alessandro Botton, Francesco Girardi, Benedetto Ruperti, Matteo Brilli, Veronica Tijero, Giulia Eccher, Francesca Populin, Elisabetta Schievano, Tobia Riello, Sergi Munné-Bosch, Monica Canton, Angela Rasori, Valerio Cardillo, Franco Meggio
2022	Methods in Molecular Biology Polina V. Pavlovich, Pierre Cauchy
2022	Current challenges and best practices for cell-free long RNA biomarker discovery Biomarker Research Lluc Cabús, Julien Lagarde, Joao Curado, Esther Lizano, Jennifer Pérez-Boza
2021	The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets GigaScience Holly C Beale, Jacquelyn M Roger, Matthew A Cattle, Liam T McKay, Drew K A Thompson, Katrina Learned, A Geoffrey Lyle, Ellen T Kephart, Rob Currie, Du Linh Lam, Lauren Sanders, Jacob Pfeil, John Vivian, Isabel Bjork, Sofie R Salama, David Haussler, Olena M Vaske
2021	Replicate sequencing libraries are important for quantification of allelic imbalance Nature Communications Asia Mendelevich, Svetlana Vinogradova, Saumya Gupta, Andrey A. Mironov, Shamil R. Sunyaev, Alexander A. Gimelbrant
2021	Single-cell RNA sequencing in human lung cancer: Applications, challenges, and pathway towards personalized therapy Journal of the Chinese Medical Association Zhi-Xiong Chong, Wan-Yong Ho, Swee-Keong Yeap, Mong-Lien Wang, Yueh Chien, Nalini Devi Verusingam, Han-Kiat Ong
2020	Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes BMC Plant Biology Diana Duarte-Delgado, Said Dadshani, Heiko Schoof, Benedict C. Oyiga, Michael Schneider, Boby Mathew, Jens Léon, Agim Ballvora
2020	A novel virtual barcode strategy for accurate panel-wide variant calling in circulating tumor DNA BMC Bioinformatics Leilei Wu, Qinfang Deng, Ze Xu, Songwen Zhou, Chao Li, Yi-Xue Li
2019	RNA-sequencing in ophthalmology research: considerations for experimental design and analysis Therapeutic Advances in Ophthalmology Nicholas Owen, Mariya Moosajee
2019	Methods in Molecular Biology Andrew R. Hesketh
2019	Flooding Responses on Grapevine: A Physiological, Transcriptional, and Metabolic Perspective Frontiers in Plant Science Benedetto Ruperti, Alessandro Botton, Francesca Populin, Giulia Eccher, Matteo Brilli, Silvia Quaggiotti, Sara Trevisan, Nadia Cainelli, Paola Guarracino, Elisabetta Schievano, Franco Meggio
2019	Identification of factors associated with duplicate rate in ChIP-seq data PLOS ONE Shulan Tian, Shuxia Peng, Michael Kalmbach, Krutika S. Gaonkar, Aditya Bhagwate, Wei Ding, Jeanette Eckel-Passow, Huihuang Yan, Susan L. Slager
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