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2025
Where are the biggest gaps in phylogenetic coverage of insect diversity?
Systematic Entomology
2025
Synthesizing decades of research into one tree for birds
Proceedings of the National Academy of Sciences
2025
Pleiotropy increases with gene age in six model multicellular eukaryotes
Evolution Letters
2025
A complete and dynamic tree of birds
Proceedings of the National Academy of Sciences
2025
Plants with higher dispersal capabilities follow ‘abundant-centre’ distributions but such patterns remain rare in animals
Nature Communications
2025
No species left behind: borrowing strength to map data-deficient species
Trends in Ecology & Evolution
2025
Is variation in female aggressiveness across Drosophila species associated with reproductive potential?
Proceedings of the Royal Society B: Biological Sciences
2024
Biological Classification System Knowledge Graph and Semi-automatic Construction of Its Invertebrate Fossil Branches
Journal of Earth Science
2024
DendroPy 5: a mature Python library for phylogenetic computing
Journal of Open Source Software
2024
Speeding up iterative applications of the BUILD supertree algorithm
PeerJ
2024
PhyloNext: a pipeline for phylogenetic diversity analysis of GBIF-mediated data
BMC Ecology and Evolution
2023
Genomic Assessment of the Contribution of the Wolbachia Endosymbiont of Eurosta solidaginis to Gall Induction
International Journal of Molecular Sciences
2023
Phylogeny‐based assignment of functional traits to DNA barcodes outperforms distance‐based, in a comparison of approaches
Molecular Ecology Resources
2023
Lipidomes of Icelandic bryophytes and screening of high contents of polyunsaturated fatty acids by using lipidomics approach
Phytochemistry
2022
Microbial Forensics: A Present to Future Perspective on Genomic Targets, Bioinformatic Challenges, and Applications
Forensic Genomics
2022
Do female amphibians and reptiles have greater reproductive output if they have more mates?
Behavioral Ecology and Sociobiology
2022
The electronic tree of life (eToL): a net of long probes to characterize the microbiome from RNA-seq data
BMC Microbiology
2021
treedata.table: a wrapper for data.table that enables fast manipulation of large phylogenetic trees matched to data
PeerJ
2021
Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes
International Journal of Molecular Sciences
2021
Physcraper: a Python package for continually updated phylogenetic trees using the Open Tree of Life
BMC Bioinformatics
2021
Multiple origins of a frameshift insertion in a mitochondrial gene in birds and turtles
GigaScience
2021
Divergent Evolution of a Protein–Protein Interaction Revealed through Ancestral Sequence Reconstruction and Resurrection
Molecular Biology and Evolution
2021
Gut microbiome and bile acids in obesity-related diseases
Best Practice & Research Clinical Endocrinology & Metabolism
2021
A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism
PeerJ
2021
Time to better integrate paleoecological research infrastructures with neoecology to improve understanding of biodiversity long-term dynamics and to inform future conservation
Environmental Research Letters
2021
OpenTree: A Python Package for Accessing and Analyzing Data from the Open Tree of Life
Systematic Biology
2021
Testing the agreement of trees with internal labels
Algorithms for Molecular Biology
2020
The evolution of multicellular complexity: the role of relatedness and environmental constraints
Proceedings of the Royal Society B: Biological Sciences
2020
Lecture Notes in Computer Science
2020
Rapid climate change results in long-lasting spatial homogenization of phylogenetic diversity
Nature Communications
2020
Linking dimensions of data on global marine animal diversity
Philosophical Transactions of the Royal Society B: Biological Sciences
2020
Simulating trees with millions of species
Bioinformatics
2020
DBTree: Very large phylogenies in portable databases
Methods in Ecology and Evolution
2020
Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees
Evolutionary Bioinformatics
2019
Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution
PeerJ
2019
Verbalizing phylogenomic conflict: Representation of node congruence across competing reconstructions of the neoavian explosion
PLOS Computational Biology
2019
Computational Biology
2019
Tree Compatibility, Incomplete Directed Perfect Phylogeny, and Dynamic Graph Connectivity: An Experimental Study
Algorithms
2019
Avian Genomics in Ecology and Evolution
2019
A Phylogenomic Supertree of Birds
Diversity
2019
The Great Tree of Life
2018
SIESTA: enhancing searches for optimal supertrees and species trees
BMC Genomics
2018
Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes
Systematic Biology
2018
Constructing a broadly inclusive seed plant phylogeny
American Journal of Botany
2018
A roadmap for global synthesis of the plant tree of life
American Journal of Botany
2017
Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead‐end
Evolution
2017
Automated assembly of a reference taxonomy for phylogenetic data synthesis
Biodiversity Data Journal
2017
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
2017
The development of scientific consensus: Analyzing conflict and concordance among avian phylogenies
Molecular Phylogenetics and Evolution
2017
How and Why to Build a Unified Tree of Life
BioEssays
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