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2024	Network Subgraph-based Method: Alignment-free Technique for Molecular Network Analysis Current Bioinformatics Efendi Zaenudin, Ezra B. Wijaya, Venugopal Reddy Mekala, Ka-Lok Ng
2023	Transcriptional Signatures and Network-Based Approaches Identified Master Regulators Transcription Factors Involved in Experimental Periodontitis Pathogenesis International Journal of Molecular Sciences Emiliano Vicencio, Josefa Nuñez-Belmar, Juan P. Cardenas, Bastian I. Cortés, Alberto J. M. Martin, Vinicius Maracaja-Coutinho, Adolfo Rojas, Emilio A. Cafferata, Luis González-Osuna, Rolando Vernal, Cristian Cortez
2022	Homology-based reconstruction of regulatory networks for bacterial and archaeal genomes Frontiers in Microbiology Luis Romero, Sebastian Contreras-Riquelme, Manuel Lira, Alberto J. M. Martin, Ernesto Perez-Rueda
2022	Network subgraph-based approach for analyzing and comparing molecular networks PeerJ Chien-Hung Huang, Efendi Zaenudin, Jeffrey J.P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng
2021	Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing Microbiology Spectrum J. Eduardo Martinez-Hernandez, Zaynab Hammoud, Alessandra Mara de Sousa, Frank Kramer, Rubens L. do Monte-Neto, Vinicius Maracaja-Coutinho, Alberto J. M. Martin
2021	Automated generation of context-specific gene regulatory networks with a weighted approach in Drosophila melanogaster Interface Focus Leandro Murgas, Sebastian Contreras-Riquelme, J. Eduardo Martínez-Hernandez, Camilo Villaman, Rodrigo Santibáñez, Alberto J. M. Martin
2020	Dissecting molecular network structures using a network subgraph approach PeerJ Chien-Hung Huang, Efendi Zaenudin, Jeffrey J.P. Tsai, Nilubon Kurubanjerdjit, Eskezeia Y. Dessie, Ka-Lok Ng
2020	Network motif-based analysis of regulatory patterns in paralogous gene pairs Journal of Bioinformatics and Computational Biology Gatis Melkus, Peteris Rucevskis, Edgars Celms, Kārlis Čerāns, Karlis Freivalds, Paulis Kikusts, Lelde Lace, Mārtiņš Opmanis, Darta Rituma, Juris Viksna
2019	Proceedings of the Tenth International Conference on Computational Systems-Biology and Bioinformatics Gatis Melkus, Peteris Rucevskis, Edgars Celms, Kārlis Čerāns, Karlis Freivalds, Paulis Kikusts, Lelde Lace, Mārtiņš Opmanis, Darta Rituma, Juris Viksna
2019	Identifying similar networks using structural hierarchy Physica A: Statistical Mechanics and its Applications Rakhi Saxena, Sharanjit Kaur, Vasudha Bhatnagar
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